Crombie, Andrew T and Khawand, Myriam El and Rhodius, Virgil A and Fengler, Kevin A and Miller, Michael C and Whited, Gregg M and McGenity, Terry J and Murrell, J Colin (2015) 'Regulation of plasmid‐encoded isoprene metabolism in<scp><i>R</i></scp><i>hodococcus</i>, a representative of an important link in the global isoprene cycle.' Environmental Microbiology, 17 (9). pp. 3314-3329. ISSN 1462-2912

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Abstract

Emissions of biogenic volatile organic compounds (VOCs) form an important part of the global carbon cycle, comprising a significant proportion of net ecosystem productivity. They impact atmospheric chemistry and contribute directly and indirectly to greenhouse gases. Isoprene, emitted largely from plants, comprises one third of total VOCs, yet in contrast to methane, which is released in similar quantities, we know little of its biodegradation. Here, we report the genome of an isoprene degrading isolate, Rhodococcus sp. AD45, and, using mutagenesis shows that a plasmid-encoded soluble di-iron centre isoprene monooxygenase (IsoMO) is essential for isoprene metabolism. Using RNA sequencing (RNAseq) to analyse cells exposed to isoprene or epoxyisoprene in a substrate-switch time-course experiment, we show that transcripts from 22 contiguous genes, including those encoding IsoMO, were highly upregulated, becoming among the most abundant in the cell and comprising over 25% of the entire transcriptome. Analysis of gene transcription in the wild type and an IsoMO-disrupted mutant strain showed that epoxyisoprene, or a subsequent product of isoprene metabolism, rather than isoprene itself, was the inducing molecule. We provide a foundation of molecular data for future research on the environmental biological consumption of this important, climate-active compound.

Item Type:	Article
Uncontrolled Keywords:	Rhodococcus; Plants; Pentanes; Butadienes; Hemiterpenes; RNA, Bacterial; Gene Expression Profiling; Sequence Analysis, RNA; Ecosystem; Climate; Base Sequence; Genome, Bacterial; Plasmids; Molecular Sequence Data; Volatile Organic Compounds; Carbon Cycle
Subjects:	Q Science > QH Natural history > QH301 Biology Q Science > QR Microbiology
Divisions:	Faculty of Science and Health Faculty of Science and Health > Life Sciences, School of
SWORD Depositor:	Elements
Depositing User:	Elements
Date Deposited:	15 May 2015 19:06
Last Modified:	09 May 2022 22:09
URI:	http://repository.essex.ac.uk/id/eprint/13708

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