Stracquadanio, G and Yang, K and Boeke, JD and Bader, JS (2016) BioPartsDB: a synthetic biology workflow web-application for education and research. Bioinformatics, 32 (22). pp. 3519-3521. DOI https://doi.org/10.1093/bioinformatics/btw394
Stracquadanio, G and Yang, K and Boeke, JD and Bader, JS (2016) BioPartsDB: a synthetic biology workflow web-application for education and research. Bioinformatics, 32 (22). pp. 3519-3521. DOI https://doi.org/10.1093/bioinformatics/btw394
Stracquadanio, G and Yang, K and Boeke, JD and Bader, JS (2016) BioPartsDB: a synthetic biology workflow web-application for education and research. Bioinformatics, 32 (22). pp. 3519-3521. DOI https://doi.org/10.1093/bioinformatics/btw394
Abstract
Synthetic biology has become a widely used technology, and expanding applications in research, education and industry require progress tracking for team-based DNA synthesis projects. Although some vendors are beginning to supply multi-kilobase sequence-verified constructs, synthesis workflows starting with short oligos remain important for cost savings and pedagogical benefit. We developed BioPartsDB as an open source, extendable workflow management system for synthetic biology projects with entry points for oligos and larger DNA constructs and ending with sequence-verified clones.
| Item Type: | Article |
|---|---|
| Additional Information: | Availability and Implementation: BioPartsDB is released under the MIT license and available for download at https://github.com/baderzone/biopartsdb. Additional documentation and video tutorials are available at https://github.com/baderzone/biopartsdb/wiki. An Amazon Web Services image is available from the AWS Market Place (ami-a01d07c8). Contact:joel.bader@jhu.edu |
| Uncontrolled Keywords: | Research; Software; Workflow; Synthetic Biology |
| Subjects: | Q Science > QA Mathematics > QA75 Electronic computers. Computer science |
| Divisions: | Faculty of Science and Health Faculty of Science and Health > Computer Science and Electronic Engineering, School of |
| SWORD Depositor: | Unnamed user with email elements@essex.ac.uk |
| Depositing User: | Unnamed user with email elements@essex.ac.uk |
| Date Deposited: | 10 Jan 2017 09:57 |
| Last Modified: | 18 Aug 2022 11:32 |
| URI: | http://repository.essex.ac.uk/id/eprint/18686 |
Available files
Filename: btw394.pdf
Licence: Creative Commons: Attribution 3.0