Items where Author is "Dumbrell, Alex J"

Article

Li, Pengfa and Tedersoo, Leho and Crowther, Thomas W and Dumbrell, Alex J and Dini-Andreote, Francisco and Bahram, Mohammad and Kuang, Lu and Li, Ting and Wu, Meng and Jiang, Yuji and Luan, Lu and Saleem, Muhammad and de Vries, Franciska T and Li, Zhongpei and Wang, Baozhan and Jiang, Jiandong (2023) Fossil-fuel-dependent scenarios could lead to a significant decline of global plant-beneficial bacteria abundance in soils by 2100. Nature Food, 4 (11). pp. 996-1006. DOI https://doi.org/10.1038/s43016-023-00869-9

Li, Pengfa and Tedersoo, Leho and Crowther, Thomas W and Wang, Baozhan and Shi, Yu and Kuang, Lu and Li, Ting and Wu, Meng and Liu, Ming and Luan, Lu and Liu, Jia and Li, Dongzhen and Li, Yongxia and Wang, Songhan and Saleem, Muhammad and Dumbrell, Alex J and Li, Zhongpei and Jiang, Jiandong (2023) Global diversity and biogeography of potential phytopathogenic fungi in a changing world. Nature Communications, 14 (1). 6482-. DOI https://doi.org/10.1038/s41467-023-42142-4

Li, Pengfa and Wu, Meng and Li, Ting and Dumbrell, Alex J and Saleem, Muhammad and Kuang, Lu and Luan, Lu and Wang, Shuang and Li, Zhongpei and Jiang, Jiandong (2023) Molecular weight of dissolved organic matter determines its interactions with microbes and its assembly processes in soils. Soil Biology and Biochemistry, 184. p. 109117. DOI https://doi.org/10.1016/j.soilbio.2023.109117

Bohmann, Kristine and Elbrecht, Vasco and Carøe, Christian and Bista, Iliana and Leese, Florian and Bunce, Michael and Yu, Douglas W and Seymour, Mathew and Dumbrell, Alex J and Creer, Simon (2022) Strategies for sample labelling and library preparation in DNA metabarcoding studies. Molecular Ecology Resources, 22 (4). pp. 1231-1246. DOI https://doi.org/10.1111/1755-0998.13512

Su, Min and Dell'Orto, Marta and D'Imporzano, Giuliana and Bani, Alessia and Dumbrell, Alex J and Adani, Fabrizio (2022) The structure and diversity of microalgae-microbial consortia isolated from various local organic wastes. Bioresource Technology, 347. p. 126416. DOI https://doi.org/10.1016/j.biortech.2021.126416

Wilkes, Martin A and Mckenzie, Morwenna and Naura, Marc and Allen, Laura and Morris, Mike and Van De Wiel, Marco and Dumbrell, Alex J and Bani, Alessia and Lashford, Craig and Lavers, Tom and England, Judy (2021) Defining Recovery Potential in River Restoration: A Biological Data-Driven Approach. Water, 13 (23). p. 3339. DOI https://doi.org/10.3390/w13233339

Ferguson, Robert MW and O'Gorman, Eoin J and McElroy, David J and McKew, Boyd A and Coleman, Ross A and Emmerson, Mark C and Dumbrell, Alex J (2021) The Ecological Impacts of Multiple Environmental Stressors on Coastal Biofilm Bacteria. Global Change Biology, 27 (13). pp. 3166-3178. DOI https://doi.org/10.1111/gcb.15626

Clark, Dave R and Underwood, Graham JC and McGenity, Terry J and Dumbrell, Alex J (2021) What drives study-dependent differences in distance–decay relationships of microbial communities? Global Ecology and Biogeography, 30 (4). pp. 811-825. DOI https://doi.org/10.1111/geb.13266

Fell, Sarah C and Carrivick, Jonathan L and Cauvy-Fraunié, Sophie and Crespo-Pérez, Verónica and Hood, Eran and Randall, Kate C and Nicholass, Kirsty J Matthews and Tiegs, Scott D and Dumbrell, Alex J and Brown, Lee E (2021) Fungal decomposition of river organic matter accelerated by decreasing glacier cover. Nature Climate Change, 11 (4). pp. 349-353. DOI https://doi.org/10.1038/s41558-021-01004-x

Ferguson, Robert MW and Neath, Charlotte EE and Nasir, Zaheer A and Garcia-Alcega, Sonia and Tyrrel, Sean and Coulon, Frederic and Dumbrell, Alex J and Colbeck, Ian and Whitby, Corinne (2021) Size fractionation of bioaerosol emissions from green-waste composting. Environment International, 147. p. 106327. DOI https://doi.org/10.1016/j.envint.2020.106327

Zhu, Yizhu and Purdy, Kevin J and Eyice, Özge and Shen, Lidong and Harpenslager, Sarah F and Yvon-Durocher, Gabriel and Dumbrell, Alex J and Trimmer, Mark (2020) Disproportionate increase in freshwater methane emissions induced by experimental warming. Nature Climate Change, 10 (7). pp. 685-690. DOI https://doi.org/10.1038/s41558-020-0824-y

Garcia-Alcega, Sonia and Nasir, Zaheer Ahmad and Cipullo, Sabrina and Ferguson, Robert MW and Yan, Cheng and Whitby, Corinne and Dumbrell, Alex J and Drew, Gillian and Colbeck, Ian and Tyrrel, Sean and Coulon, Frederic (2020) Fingerprinting ambient air to understand bioaerosol profiles in three different environments in the south east of England. Science of the Total Environment, 719. p. 137542. DOI https://doi.org/10.1016/j.scitotenv.2020.137542

Clark, Dave R and McKew, Boyd A and Dong, Liang F and Leung, Garwai and Dumbrell, Alex J and Stott, Andrew and Grant, Helen and Nedwell, David B and Trimmer, Mark and Whitby, Corinne (2020) Mineralization and nitrification: Archaea dominate ammonia-oxidising communities in grassland soils. Soil Biology and Biochemistry, 143. p. 107725. DOI https://doi.org/10.1016/j.soilbio.2020.107725

Li, Pengfa and Li, Weitao and Dumbrell, Alex J and Liu, Ming and Li, Guilong and Wu, Meng and Jiang, Chunyu and Li, Zhongpei (2020) Spatial Variation in Soil Fungal Communities across Paddy Fields in Subtropical China. mSystems, 5 (1). e00704-e00719. DOI https://doi.org/10.1128/msystems.00704-19

Bani, Alessia and Borruso, Luigimaria and Matthews Nicholass, Kirsty J and Bardelli, Tommaso and Polo, Andrea and Pioli, Silvia and Gómez-Brandón, María and Insam, Heribert and Dumbrell, Alex J and Brusetti, Lorenzo (2019) Site-Specific Microbial Decomposer Communities Do Not Imply Faster Decomposition: Results from a Litter Transplantation Experiment. Microorganisms, 7 (9). p. 349. DOI https://doi.org/10.3390/microorganisms7090349

Maček, Irena and Clark, Dave R and Šibanc, Nataša and Moser, Gerald and Vodnik, Dominik and Müller, Christoph and Dumbrell, Alex J (2019) Impacts of long‐term elevated atmospheric CO₂ concentrations on communities of arbuscular mycorrhizal fungi. Molecular Ecology, 28 (14). pp. 3445-3458. DOI https://doi.org/10.1111/mec.15160

Ferguson, Robert MW and Garcia-Alcega, Sonia and Coulon, Frederic and Dumbrell, Alex J and Whitby, Corinne and Colbeck, Ian (2019) Bioaerosol Biomonitoring: Sampling Optimisation for Molecular Microbial Ecology. Molecular Ecology Resources, 19 (3). pp. 672-690. DOI https://doi.org/10.1111/1755-0998.13002

Underwood, Graham and Michel, Christine and Meisterhans, Guillame and Niemi, Andrea and Belzile, Claude and Witt, Matthias and Dumbrell, Alex J and Koch, Boris P (2019) Organic matter from Artic sea ice loss alters bacterial community structure and function. Nature Climate Change, 9 (2). pp. 170-176. DOI https://doi.org/10.1038/s41558-018-0391-7

Garcia-Alcega, Sonia and Nasir, Zaheer Ahmad and Ferguson, Robert MW and Noël, Cyril and Cravo-Laureau, Cristiana and Whitby, Corinne and Dumbrell, Alex J and Colbeck, Ian and Tyrrel, Sean and Coulon, Frederic (2018) Can chemical and molecular biomarkers help discriminate between industrial, rural and urban environments? Science of the Total Environment, 631–63. pp. 1059-1069. DOI https://doi.org/10.1016/j.scitotenv.2018.03.062

Clark, Dave R and Ferguson, Robert MW and Harris, Danielle N and Matthews Nicholass, KJ and Prentice, Hannah J and Randall, Kate C and Randell, Luli and Warren, Scott L and Dumbrell, Alex J (2018) Streams of data from drops of water: 21st century molecular microbial ecology. WIREs Water, 5 (4). DOI https://doi.org/10.1002/wat2.1280

Bohan, David A and Vacher, Corinne and Tamaddoni-Nezhad, Alireza and Raybould, Alan and Dumbrell, Alex J and Woodward, Guy (2017) Next-Generation Global Biomonitoring: Large-scale, Automated Reconstruction of Ecological Networks. Trends in Ecology & Evolution, 32 (7). pp. 477-487. DOI https://doi.org/10.1016/j.tree.2017.03.001

Garcia-Alcega, Sonia and Nasir, ZaheerA and Ferguson, Robert MW and Whitby, Corinne and Dumbrell, Alex J and Colbeck, Ian and Gomes, Diogo and Tyrrel, Sean and Coulon, Frederic (2017) Fingerprinting outdoor air environment using microbial volatile organic compounds (MVOCs) – A review. TrAC - Trends in Analytical Chemistry, 86. pp. 75-83. DOI https://doi.org/10.1016/j.trac.2016.10.010

Thompson, Murray SA and Bankier, Claire and Bell, Thomas and Dumbrell, Alex J and Gray, Clare and Ledger, Mark E and Lehmann, Katja and McKew, Boyd A and Sayer, Carl D and Shelley, Felicity and Trimmer, Mark and Warren, Scott L and Woodward, Guy (2016) Gene‐to‐ecosystem impacts of a catastrophic pesticide spill: testing a multilevel bioassessment approach in a river ecosystem. Freshwater Biology, 61 (12). pp. 2037-2050. DOI https://doi.org/10.1111/fwb.12676

Aslam, Shazia N and Dumbrell, Alex J and Sabir, Jamal S and Mutwakil, Mohammed HZ and Baeshen, Mohammed MN and Abo‐Aba, Salah EM and Clark, Dave R and Yates, Steven A and Baeshen, Nabih A and Underwood, Graham JC and McGenity, Terry J (2016) Soil compartment is a major determinant of the impact of simulated rainfall on desert microbiota. Environmental Microbiology, 18 (12). pp. 5048-5062. DOI https://doi.org/10.1111/1462-2920.13474

Low-Décarie, Etienne and Fussmann, Gregor F and Dumbrell, Alex J and Bell, Graham (2016) Communities that thrive in extreme conditions captured from a freshwater lake. Biology Letters, 12 (9). p. 20160562. DOI https://doi.org/10.1098/rsbl.2016.0562

Fayle, Tom M and Scholtz, Olivia and Dumbrell, Alex J and Russell, Stephen and Segar, Simon T and Eggleton, Paul (2015) Detection of Mitochondrial COII DNA Sequences in Ant Guts as a Method for Assessing Termite Predation by Ants. PLOS ONE, 10 (4). e0122533-e0122533. DOI https://doi.org/10.1371/journal.pone.0122533

Cotton, TE Anne and Fitter, Alastair H and Miller, R Michael and Dumbrell, Alex J and Helgason, Thorunn (2015) Fungi in the future: interannual variation and effects of atmospheric change on arbuscular mycorrhizal fungal communities. New Phytologist, 205 (4). pp. 1598-1607. DOI https://doi.org/10.1111/nph.13224

Li, Jialin and Nedwell, David B and Beddow, Jessica and Dumbrell, Alex J and McKew, Boyd A and Thorpe, Emma L and Whitby, Corinne (2015) <i>amoA</i> Gene Abundances and Nitrification Potential Rates Suggest that Benthic Ammonia-Oxidizing Bacteria and Not Archaea Dominate N Cycling in the Colne Estuary, United Kingdom. Applied and Environmental Microbiology, 81 (1). pp. 159-165. DOI https://doi.org/10.1128/aem.02654-14

Cotton, TE Anne and Dumbrell, Alex J and Helgason, Thorunn (2014) What Goes in Must Come out: Testing for Biases in Molecular Analysis of Arbuscular Mycorrhizal Fungal Communities. PLoS ONE, 9 (10). e109234-e109234. DOI https://doi.org/10.1371/journal.pone.0109234

Šibanc, Nataša and Dumbrell, Alex J and Mandić-Mulec, Ines and Maček, Irena (2014) Impacts of naturally elevated soil CO2 concentrations on communities of soil archaea and bacteria. Soil Biology and Biochemistry, 68. pp. 348-356. DOI https://doi.org/10.1016/j.soilbio.2013.10.018

Codling, Edward A and Dumbrell, Alex J (2013) Bridging the gap between theory and data in ecological models. Ecological Complexity, 16. pp. 1-8. DOI https://doi.org/10.1016/j.ecocom.2013.09.003

Talmy, David and Blackford, Jerry and Hardman-Mountford, Nick J and Dumbrell, Alex J and Geider, Richard J (2013) An optimality model of photoadaptation in contrasting aquatic light regimes. Limnology and Oceanography, 58 (5). pp. 1802-1818. DOI https://doi.org/10.4319/lo.2013.58.5.1802

McKew, Boyd A and Dumbrell, Alex J and Taylor, Joe D and McGenity, Terry J and Underwood, Graham JC (2013) Differences between aerobic and anaerobic degradation of microphytobenthic biofilm-derived organic matter within intertidal sediments. FEMS Microbiology Ecology, 84 (3). pp. 495-509. DOI https://doi.org/10.1111/1574-6941.12077

Fayle, Tom M and Edwards, David P and Turner, Edgar C and Dumbrell, Alex J and Eggleton, Paul and Foster, William A (2012) Public goods, public services and by‐product mutualism in an ant–fern symbiosis. Oikos, 121 (8). pp. 1279-1286. DOI https://doi.org/10.1111/j.1600-0706.2011.20062.x

Codling, Edward A and Dumbrell, Alex J (2012) Mathematical and theoretical ecology: linking models with ecological processes. Interface Focus, 2 (2). pp. 144-149. DOI https://doi.org/10.1098/rsfs.2012.0008

Mommer, Liesje and Dumbrell, Alex J and Wagemaker, CAM and Ouborg, N Joop (2011) Belowground DNA-based techniques: untangling the network of plant root interactions. Plant and Soil, 348 (1-2). pp. 115-121. DOI https://doi.org/10.1007/s11104-011-0962-0

Maček, Irena and Dumbrell, Alex J and Nelson, Michaela and Fitter, Alastair H and Vodnik, Dominik and Helgason, Thorunn (2011) Local Adaptation to Soil Hypoxia Determines the Structure of an Arbuscular Mycorrhizal Fungal Community in Roots from Natural CO₂Springs. Applied and Environmental Microbiology, 77 (14). pp. 4770-4777. DOI https://doi.org/10.1128/aem.00139-11

Dumbrell, Alex J and Ashton, Peter D and Aziz, Naveed and Feng, Gu and Nelson, Michaela and Dytham, Calvin and Fitter, Alastair H and Helgason, Thorunn (2011) Distinct seasonal assemblages of arbuscular mycorrhizal fungi revealed by massively parallel pyrosequencing. New Phytologist, 190 (3). pp. 794-804. DOI https://doi.org/10.1111/j.1469-8137.2010.03636.x

Fayle, Tom M and Dumbrell, Alex J and Turner, Edgar C and Foster, William A (2011) Distributional Patterns of Epiphytic Ferns are Explained by the Presence of Cryptic Species. Biotropica, 43 (1). pp. 6-7. DOI https://doi.org/10.1111/j.1744-7429.2010.00731.x

Dumbrell, Alex J and Nelson, Michaela and Helgason, Thorunn and Dytham, Calvin and Fitter, Alastair H (2010) Idiosyncrasy and overdominance in the structure of natural communities of arbuscular mycorrhizal fungi: is there a role for stochastic processes? Journal of Ecology, 98 (2). pp. 419-428. DOI https://doi.org/10.1111/j.1365-2745.2009.01622.x

Dumbrell, Alex J and Nelson, Michaela and Helgason, Thorunn and Dytham, Calvin and Fitter, Alastair H (2010) Relative roles of niche and neutral processes in structuring a soil microbial community. The ISME Journal, 4 (3). pp. 337-345. DOI https://doi.org/10.1038/ismej.2009.122

Fayle, Tom M and Chung, Arthur YC and Dumbrell, Alex J and Eggleton, Paul and Foster, William A (2009) The Effect of Rain Forest Canopy Architecture on the Distribution of Epiphytic Ferns (<i>Asplenium</i> spp.) in Sabah, Malaysia. Biotropica, 41 (6). pp. 676-681. DOI https://doi.org/10.1111/j.1744-7429.2009.00523.x

Dumbrell, Alex J and Clark, Ewen J and Frost, Gillian A and Randell, Thomas E and Pitchford, Jonathan W and Hill, Jane K (2008) Changes in species diversity following habitat disturbance are dependent on spatial scale: theoretical and empirical evidence. Journal of Applied Ecology, 45 (5). pp. 1531-1539. DOI https://doi.org/10.1111/j.1365-2664.2008.01533.x

Book Section

Underwood, Graham JC and Dumbrell, Alex J and McGenity, Terry J and McKew, Boyd A and Whitby, Corinne (2022) The Microbiome of Coastal Sediments. In: The Marine Microbiome. The Microbiomes of Humans, Animals, Plants, and the Environment, 3 . Springer International Publishing, pp. 479-534. ISBN 9783030903824. Official URL: https://doi.org/10.1007/978-3-030-90383-1_12

Steinke, Michael and Randell, Luli and Dumbrell, Alex J and Saha, Mahasweta (2018) Volatile Biomarkers for Aquatic Ecological Research. In: Next Generation Biomonitoring: Part 2. Advances in Ecological Research, 59 . Elsevier, pp. 75-92. ISBN 978-0128143179. Official URL: https://doi.org/10.1016/bs.aecr.2018.09.002

Dumbrell, Alex J (2013) Arbuscular Mycorrhizal Fungi throughout the Year: Using Massively Parallel Pyrosequencing to Quantify Spatiotemporal Seasonal Dynamics. In: Molecular Microbial Ecology of the Rhizosphere: Volume 1. Wiley, pp. 1113-1122. ISBN 9781118296172. Official URL: http://dx.doi.org/10.1002/9781118297674.ch106