Items where Author is "Paps, Jordi"

Bowles, Alexander MC and Paps, Jordi and Bechtold, Ulrike (2022) Water‐related innovations in land plants evolved by different patterns of gene co‐option and novelty. New Phytologist, 235 (2). pp. 732-742. DOI https://doi.org/10.1111/nph.17981

Bowles, Alexander MC and Paps, Jordi and Bechtold, Ulrike (2021) Evolutionary Origins of Drought Tolerance in Spermatophytes. Frontiers in Plant Science, 12. 655924-. DOI https://doi.org/10.3389/fpls.2021.655924

Bowles, Alexander MC and Bechtold, Ulrike and Paps, Jordi (2020) The Origin of Land Plants Is Rooted in Two Bursts of Genomic Novelty. Current Biology, 30 (3). 530-536.e2. DOI https://doi.org/10.1016/j.cub.2019.11.090

Adams, Hannah R and Krewson, Callie and Vardanega, Jenny E and Fujii, Sotaro and Moreno-Chicano, Tadeo and Sambongi, Yoshihiro and Svistunenko, Dimitri and Paps, Jordi and Andrew, Colin R and Hough, Michael A (2019) One fold, two functions: cytochrome P460 and cytochrome c′-β from the methanotroph Methylococcus capsulatus (Bath). Chemical Science, 10 (10). pp. 3031-3041. DOI https://doi.org/10.1039/c8sc05210g

López-Escardó, David and Paps, Jordi and de Vargas, Colomban and Massana, Ramon and Ruiz-Trillo, Iñaki and del Campo, Javier (2018) Metabarcoding analysis on European coastal samples reveals new molecular metazoan diversity. Scientific Reports, 8 (1). 9106-. DOI https://doi.org/10.1038/s41598-018-27509-8

Pascual-Anaya, Juan and Sato, Iori and Sugahara, Fumiaki and Higuchi, Shinnosuke and Paps, Jordi and Ren, Yandong and Takagi, Wataru and Ruiz-Villalba, Adrián and Ota, Kinya G and Wang, Wen and Kuratani, Shigeru (2018) Hagfish and lamprey Hox genes reveal conservation of temporal colinearity in vertebrates. Nature Ecology & Evolution, 2 (5). pp. 859-866. DOI https://doi.org/10.1038/s41559-018-0526-2

Paps, Jordi and Holland, Peter WH (2018) Reconstruction of the ancestral metazoan genome reveals an increase in genomic novelty. Nature Communications, 9 (1). 1730-. DOI https://doi.org/10.1038/s41467-018-04136-5

Straw, Megan L and Chaplin, Amanda K and Hough, Michael A and Paps, Jordi and Bavro, Vassiliy N and Wilson, Michael T and Vijgenboom, Erik and Worrall, Jonathan AR (2018) A cytosolic copper storage protein provides a second level of copper tolerance in Streptomyces lividans. Metallomics: integrated biometal science, 2018 (10). pp. 180-193. DOI https://doi.org/10.1039/c7mt00299h

Holland, Peter WH and Marlétaz, Ferdinand and Maeso, Ignacio and Dunwell, Thomas L and Paps, Jordi (2017) New genes from old: asymmetric divergence of gene duplicates and the evolution of development. Philosophical Transactions of the Royal Society B: Biological Sciences, 372 (1713). p. 20150480. DOI https://doi.org/10.1098/rstb.2015.0480

Ruiz-Trillo, Iñaki and Paps, Jordi (2016) Acoelomorpha: earliest branching bilaterians or deuterostomes? Organisms Diversity & Evolution, 16 (2). pp. 391-399. DOI https://doi.org/10.1007/s13127-015-0239-1

Kenny, Nathan J and Sin, Yung Wa and Hayward, Alexander and Paps, Jordi and Chu, Ka Hou and Hui, Jerome HL (2015) The phylogenetic utility and functional constraint of microRNA flanking sequences. Proceedings of the Royal Society B: Biological Sciences, 282 (1803). p. 20142983. DOI https://doi.org/10.1098/rspb.2014.2983

Paps, Jordi and Xu, Fei and Zhang, Guofan and Holland, Peter WH (2015) Reinforcing the Egg-Timer: Recruitment of Novel Lophotrochozoa Homeobox Genes to Early and Late Development in the Pacific Oyster. Genome Biology and Evolution, 7 (3). pp. 677-688. DOI https://doi.org/10.1093/gbe/evv018

Jákely, Gáspár and Paps, Jordi and Nielsen, Claus (2015) The phylogenetic position of ctenophores and the origin(s) of nervous systems. EvoDevo, 6 (1). p. 1. DOI https://doi.org/10.1186/2041-9139-6-1

Ludeman, Danielle A and Farrar, Nathan and Riesgo, Ana and Paps, Jordi and Leys, Sally P (2014) Evolutionary origins of sensation in metazoans: functional evidence for a new sensory organ in sponges. BMC Evolutionary Biology, 14 (1). 3-. DOI https://doi.org/10.1186/1471-2148-14-3

Scotti, John S and Leung, Ivanhoe KH and Ge, Wei and Bentley, Michael A and Paps, Jordi and Kramer, Holger B and Lee, Joongoo and Aik, WeiShen and Choi, Hwanho and Paulsen, Steinar M and Bowman, Lesley AH and Loik, Nikita D and Horita, Shoichiro and Ho, Chia-hua and Kershaw, Nadia J and Tang, Christoph M and Claridge, Timothy DW and Preston, Gail M and McDonough, Michael A and Schofield, Christopher J (2014) Human oxygen sensing may have origins in prokaryotic elongation factor Tu prolyl-hydroxylation. Proceedings of the National Academy of Sciences, 111 (37). pp. 13331-13336. DOI https://doi.org/10.1073/pnas.1409916111

Erezyilmaz, Deniz F and Hayward, Alex and Huang, Yan and Paps, Jordi and Acs, Zoltan and Delgado, Juan A and Collantes, Francisco and Kathirithamby, Jeyaraney (2014) Expression of the Pupal Determinant broad during Metamorphic and Neotenic Development of the Strepsipteran Xenos vesparum Rossi. PLoS ONE, 9 (4). e93614-e93614. DOI https://doi.org/10.1371/journal.pone.0093614

Marlétaz, Ferdinand and Paps, Jordi and Maeso, Ignacio and Holland, Peter WH (2014) Discovery and Classification of Homeobox Genes in Animal Genomes. Methods in Molecular Biology, 1196. pp. 3-18. DOI https://doi.org/10.1007/978-1-4939-1242-1_1

Tsai, Isheng J and Zarowiecki, Magdalena and Holroyd, Nancy and Garciarrubio, Alejandro and Sanchez-Flores, Alejandro and Brooks, Karen L and Tracey, Alan and Bobes, Raúl J and Fragoso, Gladis and Sciutto, Edda and Aslett, Martin and Beasley, Helen and Bennett, Hayley M and Cai, Jianping and Camicia, Federico and Clark, Richard and Cucher, Marcela and De Silva, Nishadi and Day, Tim A and Deplazes, Peter and Estrada, Karel and Fernández, Cecilia and Holland, Peter WH and Hou, Junling and Hu, Songnian and Huckvale, Thomas and Hung, Stacy S and Kamenetzky, Laura and Keane, Jacqueline A and Kiss, Ferenc and Koziol, Uriel and Lambert, Olivia and Liu, Kan and Luo, Xuenong and Luo, Yingfeng and Macchiaroli, Natalia and Nichol, Sarah and Paps, Jordi and Parkinson, John and Pouchkina-Stantcheva, Natasha and Riddiford, Nick and Rosenzvit, Mara and Salinas, Gustavo and Wasmuth, James D and Zamanian, Mostafa and Zheng, Yadong and Cai, Xuepeng and Soberón, Xavier and Olson, Peter D and Laclette, Juan P and Brehm, Klaus and Berriman, Matthew (2013) The genomes of four tapeworm species reveal adaptations to parasitism. Nature, 496 (7443). pp. 57-63. DOI https://doi.org/10.1038/nature12031

Paps, Jordi and Medina-Chacón, Luis A and Marshall, Wyth and Suga, Hiroshi and Ruiz-Trillo, Iñaki (2013) Molecular Phylogeny of Unikonts: New Insights into the Position of Apusomonads and Ancyromonads and the Internal Relationships of Opisthokonts. Protist, 164 (1). pp. 2-12. DOI https://doi.org/10.1016/j.protis.2012.09.002

Zhang, Guofan and Fang, Xiaodong and Guo, Ximing and Li, Li and Luo, Ruibang and Xu, Fei and Yang, Pengcheng and Zhang, Linlin and Wang, Xiaotong and Qi, Haigang and Xiong, Zhiqiang and Que, Huayong and Xie, Yinlong and Holland, Peter WH and Paps, Jordi and Zhu, Yabing and Wu, Fucun and Chen, Yuanxin and Wang, Jiafeng and Peng, Chunfang and Meng, Jie and Yang, Lan and Liu, Jun and Wen, Bo and Zhang, Na and Huang, Zhiyong and Zhu, Qihui and Feng, Yue and Mount, Andrew and Hedgecock, Dennis and Xu, Zhe and Liu, Yunjie and Domazet-Lošo, Tomislav and Du, Yishuai and Sun, Xiaoqing and Zhang, Shoudu and Liu, Binghang and Cheng, Peizhou and Jiang, Xuanting and Li, Juan and Fan, Dingding and Wang, Wei and Fu, Wenjing and Wang, Tong and Wang, Bo and Zhang, Jibiao and Peng, Zhiyu and Li, Yingxiang and Li, Na and Wang, Jinpeng and Chen, Maoshan and He, Yan and Tan, Fengji and Song, Xiaorui and Zheng, Qiumei and Huang, Ronglian and Yang, Hailong and Du, Xuedi and Chen, Li and Yang, Mei and Gaffney, Patrick M and Wang, Shan and Luo, Longhai and She, Zhicai and Ming, Yao and Huang, Wen and Zhang, Shu and Huang, Baoyu and Zhang, Yong and Qu, Tao and Ni, Peixiang and Miao, Guoying and Wang, Junyi and Wang, Qiang and Steinberg, Christian EW and Wang, Haiyan and Li, Ning and Qian, Lumin and Zhang, Guojie and Li, Yingrui and Yang, Huanming and Liu, Xiao and Wang, Jian and Yin, Ye and Wang, Jun (2012) The oyster genome reveals stress adaptation and complexity of shell formation. Nature, 490 (7418). pp. 49-54. DOI https://doi.org/10.1038/nature11413

Paps, Jordi and Riutort, Marta (2012) Molecular phylogeny of the phylum Gastrotricha: New data brings together molecules and morphology. Molecular Phylogenetics and Evolution, 63 (1). pp. 208-212. DOI https://doi.org/10.1016/j.ympev.2011.12.010

González-Estévez, Cristina and Felix, Daniel A and Smith, Matthew D and Paps, Jordi and Morley, Simon J and James, Victoria and Sharp, Tyson V and Aboobaker, A Aziz (2012) SMG-1 and mTORC1 Act Antagonistically to Regulate Response to Injury and Growth in Planarians. PLoS Genetics, 8 (3). e1002619-e1002619. DOI https://doi.org/10.1371/journal.pgen.1002619

Riutort, Marta and Álvarez-Presas, Marta and Lázaro, Eva and Sol, Eduard and Paps, Jordi (2012) Evolutionary history of the Tricladida and the Platyhelminthes: an up-to-date phylogenetic and systematic account. The International Journal of Developmental Biology, 56 (1-2-3). pp. 5-17. DOI https://doi.org/10.1387/ijdb.113441mr

Paps, Jordi and Baguñà, Jaume and Riutort, Marta (2009) Lophotrochozoa internal phylogeny: new insights from an up-to-date analysis of nuclear ribosomal genes. Proceedings of the Royal Society B: Biological Sciences, 276 (1660). pp. 1245-1254. DOI https://doi.org/10.1098/rspb.2008.1574

Baguñà, Jaume and Martinez, Pere and Paps, Jordi and Riutort, Marta (2008) Back in time: a new systematic proposal for the Bilateria. Philosophical Transactions of the Royal Society B: Biological Sciences, 363 (1496). pp. 1481-1491. DOI https://doi.org/10.1098/rstb.2007.2238

Baguñà, Jaume and Martinez, Pere and Paps, Jordi and Riutort, Marta (2008) Unravelling body plan and axial evolution in the Bilateria with molecular phylogenetic markers. In: Evolving Pathways. Cambridge University Press, pp. 217-238. ISBN 9780521875004. Official URL: http://dx.doi.org/10.1017/cbo9780511541582.017

Jimenez-Guri, Eva and Paps, Jordi and Garcia-Fernandez, Jordi and Salo, Emili (2006) Hox and ParaHox genes in Nemertodermatida, a basal bilaterian clade. The International Journal of Developmental Biology, 50 (8). pp. 675-679. DOI https://doi.org/10.1387/ijdb.062167ej