Items where Author is "Rippe, Karsten"

Article

Thorn, Graeme J and Clarkson, Christopher T and Rademacher, Anne and Mamayusupova, Hulkar and Schotta, Gunnar and Rippe, Karsten and Teif, Vladimir B (2022) DNA sequence-dependent formation of heterochromatin nanodomains. Nature Communications, 13 (1). 1861-. DOI https://doi.org/10.1038/s41467-022-29360-y

Wiehle, Laura and Thorn, Graeme and Raddatz, Günter and Clarkson, Christopher and Rippe, Karsten and Lyko, Frank and Breiling, Achim and Teif, Vladimir (2019) DNA (de)methylation in embryonic stem cells controls CTCF-dependent chromatin boundaries. Genome Research, 29 (5). pp. 750-761. DOI https://doi.org/10.1101/gr.239707.118

Mallm, Jan Philipp and Iskar, Murat and Ishaque, Naveed and Klett, Lara C and Kugler, Sabrina J and Muino, Jose M and Teif, Vladimir B and Poos, Alexandra M and Großmann, Sebastian and Erdel, Fabian and Tavernari, Daniele and Koser, Sandra D and Schumacher, Sabrina and Brors, Benedikt and König, Rainer and Remondini, Daniel and Vingron, Martin and Stilgenbauer, Stephan and Lichter, Peter and Zapatka, Marc and Mertens, Daniel and Rippe, Karsten (2019) Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks. Molecular Systems Biology, 15 (5). e8339-. DOI https://doi.org/10.15252/msb.20188339

Vainshtein, Yevhen and Rippe, Karsten and Teif, Vladimir B (2017) NucTools: analysis of chromatin feature occupancy profiles from high-throughput sequencing data. BMC Genomics, 18 (1). 158-. DOI https://doi.org/10.1186/s12864-017-3580-2

Teif, Vladimir B and Mallm, Jan-Philipp and Sharma, Tanvi and Mark Welch, David B and Rippe, Karsten and Eils, Roland and Langowski, Jörg and Olins, Ada L and Olins, Donald E (2017) Nucleosome repositioning during differentiation of a human myeloid leukemia cell line. Nucleus, 8 (2). pp. 188-204. DOI https://doi.org/10.1080/19491034.2017.1295201

Teif, Vladimir B and Kepper, Nick and Yserentant, Klaus and Wedemann, Gero and Rippe, Karsten (2015) Affinity, stoichiometry and cooperativity of heterochromatin protein 1 (HP1) binding to nucleosomal arrays. Journal of Physics: Condensed Matter, 27 (6). 064110-064110. DOI https://doi.org/10.1088/0953-8984/27/6/064110

Teif, Vladimir B and Beshnova, Daria A and Vainshtein, Yevhen and Marth, Caroline and Mallm, Jan-Philipp and Höfer, Thomas and Rippe, Karsten (2014) Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development. Genome Research, 24 (8). pp. 1285-1295. DOI https://doi.org/10.1101/gr.164418.113