Research Repository

Items where Author is "Stracquadanio, G"

Up a level
Export as [feed] Atom [feed] RSS 1.0 [feed] RSS 2.0
Group by: Item Type | No Grouping
Number of items: 34.

Article

Shen, Y and Wang, Y and Chen, T and Gao, F and Gong, J and Abramczyk, D and Walker, R and Zhao, H and Chen, S and Liu, W and Luo, Y and Müller, CA and Paul-Dubois-Taine, A and Alver, B and Stracquadanio, G and Mitchell, LA and Luo, Z and Fan, Y and Zhou, B and Wen, B and Tan, F and Wang, Y and Zi, J and Xie, Z and Li, B and Yang, K and Richardson, SM and Jiang, H and French, CE and Nieduszynski, CA and Koszul, R and Marston, AL and Yuan, Y and Wang, J and Bader, JS and Dai, J and Boeke, JD and Xu, X and Cai, Y and Yang, H (2017) 'Deep functional analysis of synII, a 770-kilobase synthetic yeast chromosome.' Science, 355 (6329). ISSN 0036-8075

Richardson, SM and Mitchell, LA and Stracquadanio, G and Yang, K and Dymond, JS and DiCarlo, JE and Lee, D and Huang, CLV and Chandrasegaran, S and Cai, Y and Boeke, JD and Bader, JS (2017) 'Design of a synthetic yeast genome.' Science, 355 (6329). 1040 - 1044. ISSN 0036-8075

Xie, ZX and Li, BZ and Mitchell, LA and Wu, Y and Qi, X and Jin, Z and Jia, B and Wang, X and Zeng, BX and Liu, HM and Wu, XL and Feng, Q and Zhang, WZ and Liu, W and Ding, MZ and Li, X and Zhao, GR and Qiao, JJ and Cheng, JS and Zhao, M and Kuang, Z and Wang, X and Martin, JA and Stracquadanio, G and Yang, K and Bai, X and Zhao, J and Hu, ML and Lin, QH and Zhang, WQ and Shen, MH and Chen, S and Su, W and Wang, EX and Guo, R and Zhai, F and Guo, XJ and Du, HX and Zhu, JQ and Song, TQ and Dai, JJ and Li, FF and Jiang, GZ and Han, SL and Liu, SY and Yu, ZC and Yang, XN and Chen, K and Hu, C and Li, DS and Jia, N and Liu, Y and Wang, LT (2017) '"Perfect" designer chromosome v and behavior of a ring derivative.' Science, 355 (6329). ISSN 0036-8075

Mitchell, LA and Wang, A and Stracquadanio, G and Kuang, Z and Wang, X and Yang, K and Richardson, S and Martin, JA and Zhao, Y and Walker, R and Luo, Y and Dai, H and Dong, K and Tang, Z and Yang, Y and Cai, Y and Heguy, A and Ueberheide, B and Fenyö, D and Dai, J and Bader, JS and Boeke, JD (2017) 'Synthesis, debugging, and effects of synthetic chromosome consolidation: synVI and beyond.' Science, 355 (6329). ISSN 0036-8075

Agmon, N and Tang, Z and Yang, K and Sutter, B and Ikushima, S and Cai, Y and Caravelli, K and Martin, JA and Sun, X and Choi, WJ and Zhang, A and Stracquadanio, G and Hao, H and Tu, BP and Fenyo, D and Bader, JS and Boeke, JD (2017) 'Low escape-rate genome safeguards with minimal molecular perturbation of Saccharomyces cerevisiae.' Proceedings of the National Academy of Sciences of the United States of America, 114 (8). E1470 - E1479. ISSN 0027-8424

Stracquadanio, G and Vrugt, B and Flury, R and Schraml, P and Würl, P and Müller, TH and Knippschild, U and Henne-Bruns, D and Breitenstein, S and Clavien, PA and Graf, R and Bond, GL and Grochola, LF (2016) 'CD44 SNP<sup>rs187115</sup>: A novel biomarker signature that predicts survival in resectable pancreatic ductal adenocarcinoma.' Clinical Cancer Research, 22 (24). 6069 - 6077. ISSN 1078-0432

Stracquadanio, G and Yang, K and Boeke, JD and Bader, JS (2016) 'BioPartsDB: a synthetic biology workflow web-application for education and research.' Bioinformatics, 32 (22). 3519 - 3521. ISSN 1367-4803

Shen, Y and Stracquadanio, G and Wang, Y and Yang, K and Mitchell, LA and Xue, Y and Cai, Y and Chen, T and Dymond, JS and Kang, K and Gong, J and Zeng, X and Zhang, Y and Li, Y and Feng, Q and Xu, X and Wang, J and Wang, J and Yang, H and Boeke, JD and Bader, JS (2016) 'SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes.' Genome Research, 26 (1). 36 - 49. ISSN 1088-9051

Yang, K and Stracquadanio, G and Luo, J and Boeke, JD and Bader, JS (2015) 'BioPartsBuilder: A synthetic biology tool for combinatorial assembly of biological parts.' Bioinformatics, 32 (6). 937 - 939. ISSN 1367-4803

Agmon, N and Mitchell, LA and Cai, Y and Ikushima, S and Chuang, J and Zheng, A and Choi, WJ and Martin, JA and Caravelli, K and Stracquadanio, G and Boeke, JD (2015) 'Yeast Golden Gate (yGG) for the Efficient Assembly of S. cerevisiae Transcription Units.' ACS Synthetic Biology, 4 (7). 853 - 859. ISSN 2161-5063

Lin, Q and Jia, B and Mitchell, LA and Luo, J and Yang, K and Zeller, KI and Zhang, W and Xu, Z and Stracquadanio, G and Bader, JS and Boeke, JD and Yuan, YJ (2015) 'RADOM, an efficient in vivo method for assembling designed DNA fragments up to 10 kb long in saccharomyces cerevisiae.' ACS Synthetic Biology, 4 (3). 213 - 220. ISSN 2161-5063

Cai, Y and Agmon, N and Choi, WJ and Ubide, A and Stracquadanio, G and Caravelli, K and Hao, H and Bader, JS and Boeke, JD (2015) 'Intrinsic biocontainment: Multiplex genome safeguards combine transcriptional and recombinational control of essential yeast genes.' Proceedings of the National Academy of Sciences of the United States of America, 112 (6). 1803 - 1808. ISSN 0027-8424

Annaluru, N and Muller, H and Mitchell, LA and Ramalingam, S and Stracquadanio, G and Richardson, SM and Dymond, JS and Kuang, Z and Scheifele, LZ and Cooper, EM and Cai, Y and Zeller, K and Agmon, N and Han, JS and Hadjithomas, M and Tullman, J and Caravelli, K and Cirelli, K and Guo, Z and London, V and Yeluru, A and Murugan, S and Kandavelou, K and Agier, N and Fischer, G and Yang, K and Martin, JA and Bilgel, M and Bohutski, P and Boulier, KM and Capaldo, BJ and Chang, J and Charoen, K and Choi, WJ and Deng, P and DiCarlo, JE and Doong, J and Dunn, J and Feinberg, JI and Fernandez, C and Floria, CE and Gladowski, D and Hadidi, P and Ishizuka, I and Jabbari, J and Lau, CYL and Lee, PA and Li, S and Lin, D and Linder, ME and Ling, J and Liu, J and Liu, J and London, M and Henry, M and Mao, J and McDade, JE and McMillan, A and Moore, AM and Oh, WC and Ouyang, Y and Patel, R and Paul, M and Paulsen, LC and Qiu, J and Rhee, A and Rubashkin, MG and Soh, IY and Sotuyo, NE and Srinivas, V and Suarez, A and Wong, A and Wong, R and Xie, WR and Xu, Y and Yu, AT and Koszul, R and Bader, JS and Boeke, JD (2014) 'Total synthesis of a functional designer eukaryotic chromosome.' Science, 344 (6179). 55 - 58. ISSN 0036-8075

Stracquadanio, G and Romano, V and Nicosia, G (2013) 'Semiconductor device design using the BiMADS algorithm.' Journal of Computational Physics, 242. 304 - 320. ISSN 0021-9991

Carapezza, G and Umeton, R and Costanza, J and Angione, C and Stracquadanio, G and Papini, A and Lió, P and Nicosia, G (2013) 'Efficient behavior of photosynthetic organelles via pareto optimality, identifiability, and sensitivity analysis.' ACS Synthetic Biology, 2 (5). 274 - 288. ISSN 2161-5063

Angione, C and Occhipinti, A and Stracquadanio, G and Nicosia, G (2013) 'Bose-Einstein condensation in satisfiability problems.' European Journal of Operational Research, 227 (1). 44 - 54. ISSN 0377-2217

Stracquadanio, G and Pappalardo, E and Pardalos, PM (2012) 'A Mesh Adaptive Basin Hopping Method for the Design of Circular Antenna Arrays.' Journal of Optimization Theory and Applications, 155 (3). 1008 - 1024. ISSN 0022-3239

Umeton, R and Stracquadanio, G and Papini, A and Costanza, J and Liò, P and Nicosia, G (2012) 'Identification of sensitive enzymes in the photosynthetic carbon metabolism.' Advances in Experimental Medicine and Biology, 736. 441 - 459. ISSN 0065-2598

Stracquadanio, G and Nicosia, G (2011) 'Computational energy-based redesign of robust proteins.' Computers and Chemical Engineering, 35 (3). 464 - 473. ISSN 0098-1354

Nicosia, G and Stracquadanio, G (2008) 'Generalized pattern search algorithm for peptide structure prediction.' Biophysical Journal, 95 (10). 4988 - 4999. ISSN 0006-3495

Book Section

Pappalardo, E and Stracquadanio, G (2014) 'Designing groundwater supply systems using the mesh adaptive basin hopping algorithm.' In: UNSPECIFIED, (ed.) Optimization in Science and Engineering: In Honor of the 60th Birthday of Panos M. Pardalos. UNSPECIFIED, 407 - 421. ISBN 9781493908073, 1493908073

Conference or Workshop Item

Umeton, R and Stracquadanio, G and Sorathiya, A and Papini, A and Liò, P and Nicosia, G (2011) Design of robust metabolic pathways. In: UNSPECIFIED, ? - ?.

Stracquadanio, G and Umeton, R and Costanza, J and Annibali, V and Mechelli, R and Pavone, M and Zammataro, L and Nicosia, G (2011) Large scale agent-based modeling of the humoral and cellular immune response. In: UNSPECIFIED, ? - ?.

Cutello, V and Nicosia, G and Pavone, M and Stracquadanio, G (2010) Entropic divergence for population based optimization algorithms. In: UNSPECIFIED, ? - ?.

Stracquadanio, G and Umeton, R and Papini, A and Lio, P and Nicosia, G (2010) Analysis and optimization of C<inf>3</inf> photosynthetic carbon metabolism. In: UNSPECIFIED, ? - ?.

Stracquadanio, G and Drago, C and Romano, V and Nicosia, G (2010) Multi-objective optimization of doping profile in semiconductor design GECCO track: Real world applications. In: UNSPECIFIED, ? - ?.

Stracquadanio, G and Drago, C and Romano, V and Nicosia, G (2010) An immunological algorithm for doping profile optimization in semiconductors design. In: UNSPECIFIED, ? - ?.

Cutello, V and Nicosia, G and Pavone, M and Stracquadanio, G (2010) An information-theoretic approach for clonal selection algorithms. In: UNSPECIFIED, ? - ?.

Conca, P and Nicosia, G and Stracquadanio, G and Timmis, J (2009) Nominal-yield-area tradeoff in automatic synthesis of analog circuits: A genetic programming approach using immune-inspired operators. In: UNSPECIFIED, ? - ?.

Nicosia, G and Stracquadanio, G (2009) A design-for-yield algorithm to assess and improve the structural and energetic robustness of proteins and drugs. In: UNSPECIFIED, ? - ?.

Ciccazzo, A and Halfmann, T and Marotta, A and Nicosia, G and Rinaudo, S and Stracquadanio, G and Venturi, A (2008) New coupled EM and circuit simulation flow for integrated spiral inductor by introducing symbolic simplified expressions. In: UNSPECIFIED, ? - ?.

Ciccazzo, A and Conca, P and Nicosia, G and Stracquadanio, G (2008) An advanced clonal selection algorithm with ad-hoc network-based hypermutation operators for synthesis of topology and sizing of analog electrical circuits. In: UNSPECIFIED, ? - ?.

Nicosia, G and Stracquadanio, G (2007) Generalized pattern search and mesh adaptive direct search algorithms for protein structure prediction. In: UNSPECIFIED, ? - ?.

Book

Pappalardo, E and Pardalos, PM and Stracquadanio, G (2013) Optimization Approaches for Solving String Selection Problems. SpringerBriefs in Optimization . Springer. ISBN 978-1-4614-9052-4

This list was generated on Sat Mar 23 15:14:24 2019 GMT.