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Wang, Yucheng and Gorrie-Stone, Tyler J and Grant, Olivia A and Andrayas, Alexandria D and Zhai, Xiaojun and McDonald-Maier, Klaus D and Schalkwyk, Leonard C (2022) InterpolatedXY: a two-step strategy to normalise DNA methylation microarray data avoiding sex bias. Bioinformatics, 38 (16). pp. 3950-3957. DOI https://doi.org/10.1093/bioinformatics/btac436
Osuntoki, Itunu G and Harrison, Andrew and Dai, Hongsheng and Bao, Yanchun and Zabet, Nicolae Radu (2022) ZipHiC: a novel Bayesian framework to identify enriched interactions and experimental biases in Hi-C data. Bioinformatics, 38 (14). btac387-btac387. DOI https://doi.org/10.1093/bioinformatics/btac387
Hu, Xiaotian and Feng, Cong and Zhou, Yincong and Harrison, Andrew and Chen, Ming (2022) DeepTrio: a ternary prediction system for protein-protein interaction using mask multiple parallel convolutional neural networks. Bioinformatics, 28 (3). pp. 694-702. DOI https://doi.org/10.1093/bioinformatics/btab737
Zhou, Jiyun and Lu, Qin and Gui, Lin and Xu, Ruifeng and Long, Yunfei and Wang, Hongpeng (2019) MTTFsite: cross-cell type TF binding site prediction by using multi-task learning. Bioinformatics, 35 (24). pp. 5067-5077. DOI https://doi.org/10.1093/bioinformatics/btz451
Gorrie-Stone, TJ and Smart, MC and Saffari, A and Malki, K and Hannon, E and Burrage, J and Mill, J and Kumari, M and Schalkwyk, LC (2019) Bigmelon: tools for analysing large DNA methylation datasets. Bioinformatics, 35 (6). pp. 981-986. DOI https://doi.org/10.1093/bioinformatics/bty713
Zheng, Jie and Rodriguez, Santiago and Laurin, Charles and Baird, Denis and Trela-Larsen, Lea and Erzurumluoglu, Mesut A and Zheng, Yi and White, Jon and Giambartolomei, Claudia and Zabaneh, Delilah and Morris, Richard and Kumari, Meena and Casas, Juan P and Hingorani, Aroon D and Evans, David M and Gaunt, Tom R and Day, Ian NM (2017) HAPRAP: a haplotype-based iterative method for statistical fine mapping using GWAS summary statistics. Bioinformatics, 33 (1). pp. 79-86. DOI https://doi.org/10.1093/bioinformatics/btw565
Stracquadanio, G and Yang, K and Boeke, JD and Bader, JS (2016) BioPartsDB: a synthetic biology workflow web-application for education and research. Bioinformatics, 32 (22). pp. 3519-3521. DOI https://doi.org/10.1093/bioinformatics/btw394
Yang, Kun and Stracquadanio, Giovanni and Luo, Jingchuan and Boeke, Jef D and Bader, Joel S (2016) BioPartsBuilder: a synthetic biology tool for combinatorial assembly of biological parts. Bioinformatics, 32 (6). pp. 937-939. DOI https://doi.org/10.1093/bioinformatics/btv664
Zabet, Nicolae Radu and Adryan, Boris (2012) A comprehensive computational model of facilitated diffusion in prokaryotes. Bioinformatics, 28 (11). pp. 1517-1524. DOI https://doi.org/10.1093/bioinformatics/bts178
Zabet, Nicolae Radu and Adryan, Boris (2012) GRiP: a computational tool to simulate transcription factor binding in prokaryotes. Bioinformatics, 28 (9). pp. 1287-1289. DOI https://doi.org/10.1093/bioinformatics/bts132
Marco, Antonio and Griffiths-Jones, Sam (2012) Detection of microRNAs in color space. Bioinformatics, 28 (3). pp. 318-323. DOI https://doi.org/10.1093/bioinformatics/btr686
Chu, D and Zabet, NR and von der Haar, T (2012) A novel and versatile computational tool to model translation. Bioinformatics, 28 (2). pp. 292-293. DOI https://doi.org/10.1093/bioinformatics/btr650
Marco, Antonio and Konikoff, Charlotte and Karr, Timothy L and Kumar, Sudhir (2009) Relationship between gene co-expression and sharing of transcription factor binding sites in <i>Drosophila melanogaster</i>. Bioinformatics, 25 (19). pp. 2473-2477. DOI https://doi.org/10.1093/bioinformatics/btp462
Davis, Oliver SP and Plomin, Robert and Schalkwyk, Leonard C (2009) The SNPMaP package for R: a framework for genome-wide association using DNA pooling on microarrays. Bioinformatics, 25 (2). pp. 281-283. DOI https://doi.org/10.1093/bioinformatics/btn587