Browse by Journal

Chathoth, Keerthi and Mikheeva, Liudmila and Crevel, Gilles and Wolfe, Jareth and Hunter, Ioni and Beckett-Doyle, Saskia and Cotterill, Sue and Dai, Hongsheng and Harrison, Andrew and Zabet, Nicolae (2022) The role of Insulators and transcription in 3D chromatin organisation of flies. Genome Research, 32 (4). pp. 682-698. DOI https://doi.org/10.1101/gr.275809.121 (In Press)

Wiehle, Laura and Thorn, Graeme and Raddatz, Günter and Clarkson, Christopher and Rippe, Karsten and Lyko, Frank and Breiling, Achim and Teif, Vladimir (2019) DNA (de)methylation in embryonic stem cells controls CTCF-dependent chromatin boundaries. Genome Research, 29 (5). pp. 750-761. DOI https://doi.org/10.1101/gr.239707.118

Chathoth, Keerthi T and Zabet, Nicolae Radu (2019) Chromatin architecture reorganisation during neuronal cell differentiation in Drosophila genome. Genome Research, 29 (4). pp. 613-625. DOI https://doi.org/10.1101/gr.246710.118

Marin, R and Cortez, D and Lamanna, F and Pradeepa, MM and Leushkin, E and Julien, P and Liechti, A and Halbert, J and Brüning, T and Mössinger, K and Trefzer, T and Conrad, C and Kerver, HN and Wade, J and Tschopp, P and Kaessmann, H (2017) Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage. Genome Research, 27 (12). pp. 1974-1987. DOI https://doi.org/10.1101/gr.223727.117

Shen, Yue and Stracquadanio, Giovanni and Wang, Yun and Yang, Kun and Mitchell, Leslie A and Xue, Yaxin and Cai, Yizhi and Chen, Tai and Dymond, Jessica S and Kang, Kang and Gong, Jianhui and Zeng, Xiaofan and Zhang, Yongfen and Li, Yingrui and Feng, Qiang and Xu, Xun and Wang, Jun and Wang, Jian and Yang, Huanming and Boeke, Jef D and Bader, Joel S (2016) SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes. Genome Research, 26 (1). pp. 36-49. DOI https://doi.org/10.1101/gr.193433.115

Skinner, Benjamin M and Sargent, Carole A and Churcher, Carol and Hunt, Toby and Herrero, Javier and Loveland, Jane E and Dunn, Matt and Louzada, Sandra and Fu, Beiyuan and Chow, William and Gilbert, James and Austin-Guest, Siobhan and Beal, Kathryn and Carvalho-Silva, Denise and Cheng, William and Gordon, Daria and Grafham, Darren and Hardy, Matt and Harley, Jo and Hauser, Heidi and Howden, Philip and Howe, Kerstin and Lachani, Kim and Ellis, Peter JI and Kelly, Daniel and Kerry, Giselle and Kerwin, James and Ng, Bee Ling and Threadgold, Glen and Wileman, Thomas and Wood, Jonathan MD and Yang, Fengtang and Harrow, Jen and Affara, Nabeel A and Tyler-Smith, Chris (2016) The pig X and Y Chromosomes: structure, sequence, and evolution. Genome Research, 26 (1). pp. 130-139. DOI https://doi.org/10.1101/gr.188839.114

Bitton, Danny A and Atkinson, Sophie R and Rallis, Charalampos and Smith, Graeme C and Ellis, David A and Chen, Yuan YC and Malecki, Michal and Codlin, Sandra and Lemay, Jean-François and Cotobal, Cristina and Bachand, François and Marguerat, Samuel and Mata, Juan and Bähler, Jürg (2015) Widespread exon skipping triggers degradation by nuclear RNA surveillance in fission yeast. Genome Research, 25 (6). pp. 884-896. DOI https://doi.org/10.1101/gr.185371.114

Spiers, Helen and Hannon, Eilis and Schalkwyk, Leonard C and Smith, Rebecca and Wong, Chloe CY and O’Donovan, Michael C and Bray, Nicholas J and Mill, Jonathan (2015) Methylomic trajectories across human fetal brain development. Genome Research, 25 (3). pp. 338-352. DOI https://doi.org/10.1101/gr.180273.114

Teif, Vladimir B and Beshnova, Daria A and Vainshtein, Yevhen and Marth, Caroline and Mallm, Jan-Philipp and Höfer, Thomas and Rippe, Karsten (2014) Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development. Genome Research, 24 (8). pp. 1285-1295. DOI https://doi.org/10.1101/gr.164418.113

Bitton, Danny A and Rallis, Charalampos and Jeffares, Daniel C and Smith, Graeme C and Chen, Yuan YC and Codlin, Sandra and Marguerat, Samuel and Bähler, Jürg (2014) LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq. Genome Research, 24 (7). pp. 1169-1179. DOI https://doi.org/10.1101/gr.166819.113

Taylor, Gillian CA and Eskeland, Ragnhild and Hekimoglu-Balkan, Betül and Pradeepa, Madapura M and Bickmore, Wendy A (2013) H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction. Genome Research, 23 (12). pp. 2053-2065. DOI https://doi.org/10.1101/gr.155028.113

Kumar, Sudhir and Suleski, Michael P and Markov, Glenn J and Lawrence, Simon and Marco, Antonio and Filipski, Alan J (2009) Positional conservation and amino acids shape the correct diagnosis and population frequencies of benign and damaging personal amino acid mutations. Genome Research, 19 (9). pp. 1562-1569. DOI https://doi.org/10.1101/gr.091991.109

Schalkwyk, Leonard C and Cusack, Brian and Dunkel, Ilona and Hopp, Martina and Kramer, Markus and Palczewski, Stefanie and Piefke, Jutta and Scheel, Sabine and Weiher, Michael and Wenske, Gunther and Lehrach, Hans and Himmelbauer, Heinz (2001) Advanced Integrated Mouse YAC Map Including BAC Framework. Genome Research, 11 (12). pp. 2142-2150. DOI https://doi.org/10.1101/gr.176201

Schalkwyk, Leonard C and Jung, Martin and Daser, Angelika and Weiher, Michael and Walter, Jörn and Himmelbauer, Heinz and Lehrach, Hans (1999) Panel of Microsatellite Markers for Whole-Genome Scans and Radiation Hybrid Mapping and a Mouse Family Tree. Genome Research, 9 (9). pp. 878-887. DOI https://doi.org/10.1101/gr.9.9.878

Hunter, KW and Riba, L and Schalkwyk, L and Clark, M and Resenchuk, S and Beeghly, A and Su, J and Tinkov, F and Lee, P and Ramu, E and Lehrach, H and Housman, D (1996) Toward the construction of integrated physical and genetic maps of the mouse genome using interspersed repetitive sequence PCR (IRS-PCR) genomics. Genome Research, 6 (4). pp. 290-299. DOI https://doi.org/10.1101/gr.6.4.290