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Items where Author is "Teif, Vladimir B"

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Number of items: 16.


Shtumpf, Mariya and Piroeva, Kristan V and Agrawal, Shivam P and Jacob, Divya R and Teif, Vladimir B (2022) NucPosDB: a database of nucleosome positioning in vivo and nucleosomics of cell-free DNA. Chromosoma, 131 (1-2). pp. 19-28. DOI https://doi.org/10.1007/s00412-021-00766-9

Thorn, Graeme J and Clarkson, Christopher T and Rademacher, Anne and Mamayusupova, Hulkar and Schotta, Gunnar and Rippe, Karsten and Teif, Vladimir B (2022) DNA sequence-dependent formation of heterochromatin nanodomains. Nature Communications, 13 (1). 1861-. DOI https://doi.org/10.1038/s41467-022-29360-y

Cucinotta, Christine E and Martin, Benjamin JE and Noé González, Melvin and Raman, Pravrutha and Teif, Vladimir B and Vlaming, Hanneke (2021) Strength is in engagement The rise of an online scientific community during the COVID‐19 pandemic. EMBO Reports, 22 (5). e52612-. DOI https://doi.org/10.15252/embr.202152612

Antwi, Enoch B and Olins, Ada and Teif, Vladimir B and Bieg, Matthias and Bauer, Tobias and Gu, Zuguang and Brors, Benedikt and Eils, Roland and Olins, Donald and Ishaque, Naveed (2020) Whole-genome fingerprint of the DNA methylome during chemically induced differentiation of the human AML cell line HL-60/S4. Biology Open, 9 (2). bio044222-. DOI https://doi.org/10.1242/bio.044222

Clarkson, Christopher T and Deeks, Emma A and Samarista, Ralph and Mamayusupova, Hulkar and Zhurkin, Victor B and Teif, Vladimir B (2019) CTCF-dependent chromatin boundaries formed by asymmetric nucleosome arrays with decreased linker length. Nucleic Acids Research, 47 (21). pp. 11181-11196. DOI https://doi.org/10.1093/nar/gkz908

Mallm, Jan Philipp and Iskar, Murat and Ishaque, Naveed and Klett, Lara C and Kugler, Sabrina J and Muino, Jose M and Teif, Vladimir B and Poos, Alexandra M and Großmann, Sebastian and Erdel, Fabian and Tavernari, Daniele and Koser, Sandra D and Schumacher, Sabrina and Brors, Benedikt and König, Rainer and Remondini, Daniel and Vingron, Martin and Stilgenbauer, Stephan and Lichter, Peter and Zapatka, Marc and Mertens, Daniel and Rippe, Karsten (2019) Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks. Molecular Systems Biology, 15 (5). e8339-. DOI https://doi.org/10.15252/msb.20188339

Vainshtein, Yevhen and Rippe, Karsten and Teif, Vladimir B (2017) NucTools: analysis of chromatin feature occupancy profiles from high-throughput sequencing data. BMC Genomics, 18 (1). 158-. DOI https://doi.org/10.1186/s12864-017-3580-2

Teif, Vladimir B and Mallm, Jan-Philipp and Sharma, Tanvi and Mark Welch, David B and Rippe, Karsten and Eils, Roland and Langowski, Jörg and Olins, Ada L and Olins, Donald E (2017) Nucleosome repositioning during differentiation of a human myeloid leukemia cell line. Nucleus, 8 (2). pp. 188-204. DOI https://doi.org/10.1080/19491034.2017.1295201

Teif, Vladimir B (2016) Nucleosome positioning: resources and tools online. Briefings in Bioinformatics, 17 (5). pp. 745-757. DOI https://doi.org/10.1093/bib/bbv086

Salih, Bilal F and Teif, Vladimir B and Tripathi, Vijay and Trifonov, Edward N (2015) Strong nucleosomes of mouse genome including recovered centromeric sequences. Journal of Biomolecular Structure and Dynamics, 33 (6). pp. 1164-1175. DOI https://doi.org/10.1080/07391102.2014.938700

Teif, Vladimir B and Kepper, Nick and Yserentant, Klaus and Wedemann, Gero and Rippe, Karsten (2015) Affinity, stoichiometry and cooperativity of heterochromatin protein 1 (HP1) binding to nucleosomal arrays. Journal of Physics: Condensed Matter, 27 (6). 064110-064110. DOI https://doi.org/10.1088/0953-8984/27/6/064110

Cherstvy, Andrey G and Teif, Vladimir B (2014) Electrostatic effect of H1-histone protein binding on nucleosome repeat length. Physical Biology, 11 (4). 044001-044001. DOI https://doi.org/10.1088/1478-3975/11/4/044001

Teif, Vladimir B and Beshnova, Daria A and Vainshtein, Yevhen and Marth, Caroline and Mallm, Jan-Philipp and Höfer, Thomas and Rippe, Karsten (2014) Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development. Genome Research, 24 (8). pp. 1285-1295. DOI https://doi.org/10.1101/gr.164418.113

Beshnova, Daria A and Cherstvy, Andrey G and Vainshtein, Yevhen and Teif, Vladimir B (2014) Regulation of the nucleosome repeat length in vivo by the DNA sequence, protein concentrations and long-range interactions. PLoS Computational Biology, 10 (7). e1003698-e1003698. DOI https://doi.org/10.1371/journal.pcbi.1003698

Book Section

Teif, Vladimir B and Clarkson, Christopher T (2019) Nucleosome positioning. In: Encyclopedia of Bioinformatics and Computational Biology (vol 2). Elsevier, 308 - 317.


Clarkson, Christopher T and Deeks, Emma A and Samarista, Ralph and Mamayusupova, Hulkar and Zhurkin, Victor B and Teif, Vladimir B (2019) CTCF-dependent chromatin boundaries formed by asymmetric nucleosome arrays with decreased linker length. Working Paper. bioRxiv. (Unpublished)

This list was generated on Thu Jan 26 22:02:22 2023 GMT.