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Pine, Angela C and Brooke, Greg N and Marco, Antonio (2023) A computational approach to identify efficient RNA cleaving 10-23 DNAzymes. NAR Genomics and Bioinformatics, 5 (1). lqac098-. DOI https://doi.org/10.1093/nargab/lqac098

Marco, Antonio (2022) The Chromosomal Distribution of Sex-Biased MicroRNAs in Drosophila is Nonadaptive. Genome Biology and Evolution, 14 (7). evac103-. DOI https://doi.org/10.1093/gbe/evac103

Hatlen, Andrea and Marco, Antonio (2020) Pervasive selection against microRNA target sites in human populations. Molecular Biology and Evolution, 37 (12). pp. 3399-3408. DOI https://doi.org/10.1093/molbev/msaa155

Hatlen, Andrea and Helmy, Mohab and Marco, Antonio (2019) PopTargs: a database for studying population evolutionary genetics of human microRNA target sites. Database, 2019 (1). DOI https://doi.org/10.1093/database/baz102

Marco, Antonio (2019) Comment on “microRNAs in the Same Clusters Evolve to Coordinately Regulate Functionally Related Genes”. Molecular Biology and Evolution, 36 (8). p. 1843. DOI https://doi.org/10.1093/molbev/msz120

Helmy, Mohab and Hatlen, Andrea and Marco, Antonio (2019) The Impact of Population Variation in the Analysis of microRNA Target Sites. Non-Coding RNA, 5 (2). p. 42. DOI https://doi.org/10.3390/ncrna5020042

Marco, Antonio (2018) SeedVicious: Analysis of microRNA target and near-target sites. PLoS ONE, 13 (4). e0195532-e0195532. DOI https://doi.org/10.1371/journal.pone.0195532

Clifton, BD and Librado, P and Yeh, S and Solares, E and Real, D and Jayasekera, S and Zhang, W and Shi, M and Park, R and Magie, R and Ma, H and Xia, X and Marco, A and Rozas, J and Ranz, JM (2017) Rapid Functional And Sequence Differentiation of a Tandemly-Repeated Species-Specific Multigene Family in Drosophila. Molecular Biology and Evolution, 34 (1). pp. 51-65. DOI https://doi.org/10.1093/molbev/msw212

Marco, Antonio (2015) Selection Against Maternal microRNA Target Sites in Maternal Transcripts. G3 Genes|Genomes|Genetics, 5 (10). pp. 2199-2207. DOI https://doi.org/10.1534/g3.115.019497

Marco, Antonio (2014) Sex-biased expression of microRNAs in<i>Drosophila melanogaster</i>. Open Biology, 4 (4). p. 140024. DOI https://doi.org/10.1098/rsob.140024

Marco, Antonio and Ninova, Maria and Ronshaugen, Matthew and Griffiths-Jones, Sam (2013) Clusters of microRNAs emerge by new hairpins in existing transcripts. Nucleic Acids Research, 41 (16). pp. 7745-7752. DOI https://doi.org/10.1093/nar/gkt534

Marco, Antonio and Ninova, Maria and Griffiths-Jones, Sam (2013) Multiple products from microRNA transcripts. Biochemical Society Transactions, 41 (4). pp. 850-854. DOI https://doi.org/10.1042/bst20130035

Hui, Jerome HL and Marco, Antonio and Hunt, Suzanne and Melling, Janet and Griffiths-Jones, Sam and Ronshaugen, Matthew (2013) Structure, evolution and function of the bi-directionally transcribed iab-4/iab-8 microRNA locus in arthropods. Nucleic Acids Research, 41 (5). pp. 3352-3361. DOI https://doi.org/10.1093/nar/gks1445

Marco, Antonio and Kozomara, Ana and Hui, Jerome HL and Emery, Aidan M and Rollinson, David and Griffiths-Jones, Sam and Ronshaugen, Matthew (2013) Sex-Biased Expression of MicroRNAs in Schistosoma mansoni. PLoS Neglected Tropical Diseases, 7 (9). e2402-e2402. DOI https://doi.org/10.1371/journal.pntd.0002402

Marco, A (2012) Regulatory RNAs in the light of Drosophila genomics. Briefings in Functional Genomics, 11 (5). pp. 356-365. DOI https://doi.org/10.1093/bfgp/els033

Marco, Antonio and Hooks, Katarzyna and Griffiths-Jones, Sam (2012) Evolution and function of the extended miR-2 microRNA family. RNA Biology, 9 (3). pp. 242-248. DOI https://doi.org/10.4161/rna.19160

Marco, Antonio and Griffiths-Jones, Sam (2012) Detection of microRNAs in color space. Bioinformatics, 28 (3). pp. 318-323. DOI https://doi.org/10.1093/bioinformatics/btr686

Marco, Antonio and MacPherson, Jamie I and Ronshaugen, Matthew and Griffiths-Jones, Sam (2012) MicroRNAs from the same precursor have different targeting properties. Silence, 3 (1). p. 8. DOI https://doi.org/10.1186/1758-907x-3-8

Griffiths‐Jones, Sam and Hui, Jerome HL and Marco, Antonio and Ronshaugen, Matthew (2011) MicroRNA evolution by arm switching. EMBO reports, 12 (2). pp. 172-177. DOI https://doi.org/10.1038/embor.2010.191

Marco, Antonio and Hui, Jerome HL and Ronshaugen, Matthew and Griffiths-Jones, Sam (2010) Functional Shifts in Insect microRNA Evolution. Genome Biology and Evolution, 2. pp. 686-696. DOI https://doi.org/10.1093/gbe/evq053

Marco, Antonio and Marín, Ignacio (2009) Interactome and Gene Ontology provide congruent yet subtly different views of a eukaryotic cell. BMC Systems Biology, 3 (1). 69-. DOI https://doi.org/10.1186/1752-0509-3-69

Marco, A and Marin, I (2009) CGIN1: A Retroviral Contribution to Mammalian Genomes. Molecular Biology and Evolution, 26 (10). pp. 2167-2170. DOI https://doi.org/10.1093/molbev/msp127

Marco, Antonio and Konikoff, Charlotte and Karr, Timothy L and Kumar, Sudhir (2009) Relationship between gene co-expression and sharing of transcription factor binding sites in <i>Drosophila melanogaster</i>. Bioinformatics, 25 (19). pp. 2473-2477. DOI https://doi.org/10.1093/bioinformatics/btp462

Kumar, Sudhir and Suleski, Michael P and Markov, Glenn J and Lawrence, Simon and Marco, Antonio and Filipski, Alan J (2009) Positional conservation and amino acids shape the correct diagnosis and population frequencies of benign and damaging personal amino acid mutations. Genome Research, 19 (9). pp. 1562-1569. DOI https://doi.org/10.1101/gr.091991.109

Marco, Antonio and Marín, Ignacio (2008) How Athila retrotransposons survive in the Arabidopsis genome. BMC Genomics, 9 (1). p. 219. DOI https://doi.org/10.1186/1471-2164-9-219

Marco, Antonio and Marín, Ignacio (2007) A general strategy to determine the congruence between a hierarchical and a non-hierarchical classification. BMC Bioinformatics, 8 (1). 442-. DOI https://doi.org/10.1186/1471-2105-8-442

Marco, A (2004) Evolutionary and Structural Analyses of GDAP1, Involved in Charcot-Marie-Tooth Disease, Characterize a Novel Class of Glutathione Transferase-Related Genes. Molecular Biology and Evolution, 21 (1). pp. 176-187. DOI https://doi.org/10.1093/molbev/msh013

Book Section

Marco, A (2017) The Origin and Evolution of Maternal Genes. In: Oocytes. Results and Problems in Cell Differentiation, 63 . Springer, pp. 483-494. ISBN 978-3-319-60854-9. Official URL: https://doi.org/10.1007/978-3-319-60855-6_20

Marco, A (2017) Clearance of Maternal RNAs: Not a Mummy's Embryo Anymore. In: Zygotic Genome Activation. Methods in Molecular Biology . Springer, pp. 1-10. ISBN 9781493969869. Official URL: http://dx.doi.org/10.1007/978-1-4939-6988-3_1