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Items where Author is "Schalkwyk, LC"

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Gorrie-Stone, TJ and Smart, MC and Saffari, A and Malki, K and Hannon, E and Burrage, J and Mill, J and Kumari, M and Schalkwyk, LC (2018) 'Bigmelon: tools for analysing large DNA methylation datasets.' Bioinformatics. ISSN 1367-4803

Spiers, H and Hannon, E and Schalkwyk, LC and Bray, NJ and Mill, J (2017) '5-hydroxymethylcytosine is highly dynamic across human fetal brain development.' BMC Genomics, 18 (1). ISSN 1471-2164

Janecka, M and Haworth, CMA and Ronald, A and Krapohl, E and Happé, F and Mill, J and Schalkwyk, LC and Fernandes, C and Reichenberg, A and Rijsdijk, F (2017) 'Paternal Age Alters Social Development in Offspring.' Journal of the American Academy of Child and Adolescent Psychiatry, 56 (5). 383 - 390. ISSN 0890-8567

Malki, K and Tosto, MG and Mouriño-Talín, H and Rodríguez-Lorenzo, S and Pain, O and Jumhaboy, I and Liu, T and Parpas, P and Newman, S and Malykh, A and Carboni, L and Uher, R and McGuffin, P and Schalkwyk, LC and Bryson, K and Herbster, M (2017) 'Highly polygenic architecture of antidepressant treatment response: Comparative analysis of SSRI and NRI treatment in an animal model of depression.' American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics, 174 (3). 235 - 250. ISSN 1552-4841

Janecka, M and Marzi, SJ and Parsons, MJ and Liu, L and Paya-Cano, JL and Smith, RG and Fernandes, C and Schalkwyk, LC (2017) 'Genetic polymorphisms and their association with brain and behavioural measures in heterogeneous stock mice.' Scientific Reports, 7. ISSN 2045-2322

Janecka, M and Mill, J and Basson, MA and Goriely, A and Spiers, H and Reichenberg, A and Schalkwyk, LC and Fernandes, C (2017) 'Advanced paternal age effects in neurodevelopmental disorders?review of potential underlying mechanisms.' Translational Psychiatry, 7. ISSN 2158-3188

Viana, J and Hannon, E and Dempster, E and Pidsley, R and Macdonald, R and Knox, O and Spiers, H and Troakes, C and Al-Saraj, S and Turecki, G and Schalkwyk, LC and Mill, J (2017) 'Schizophrenia-associated methylomic variation: molecular signatures of disease and polygenic risk burden across multiple brain regions.' Human Molecular Genetics, 26 (1). 210 - 225. ISSN 0964-6906

Malki, K and Du Rietz, E and Crusio, WE and Pain, O and Paya-Cano, J and Karadaghi, RL and Sluyter, F and de Boer, SF and Sandnabba, K and Schalkwyk, LC and Asherson, P and Tosto, MG (2016) 'Transcriptome analysis of genes and gene networks involved in aggressive behavior in mouse and zebrafish.' American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics, 171 (6). 827 - 838. ISSN 1552-4841

Malki, K and Tosto, MG and Pain, O and Sluyter, F and Mineur, YS and Crusio, WE and de Boer, S and Sandnabba, KN and Kesserwani, J and Robinson, E and Schalkwyk, LC and Asherson, P (2016) 'Comparative mRNA analysis of behavioral and genetic mouse models of aggression.' American Journal of Medical Genetics Part B-Neuropsychiatric Genetics, 171 (3). 427 - 436. ISSN 1552-4841

Houtepen, LC and Vinkers, CH and Carrillo-Roa, T and Hiemstra, M and Van Lier, PA and Meeus, W and Branje, S and Heim, CM and Nemeroff, CB and Mill, J and Schalkwyk, LC and Creyghton, MP and Kahn, RS and Joëls, M and Binder, EB and Boks, MPM (2016) 'Genome-wide DNA methylation levels and altered cortisol stress reactivity following childhood trauma in humans.' Nature Communications, 7. ISSN 2041-1723

Marzi, SJ and Meaburn, EL and Dempster, EL and Lunnon, K and Paya-Cano, JL and Smith, RG and Volta, M and Troakes, C and Schalkwyk, LC and Mill, J (2016) 'Tissue-specific patterns of allelically-skewed DNA methylation.' Epigenetics, 11 (1). 24 - 35. ISSN 1559-2294

Hannon, E and Spiers, H and Viana, J and Pidsley, R and Burrage, J and Murphy, TM and Troakes, C and Turecki, G and O'Donovan, MC and Schalkwyk, LC and Bray, NJ and Mill, J (2015) 'Methylation QTLs in the developing brain and their enrichment in schizophrenia risk loci.' Nature Neuroscience, 19 (1). 48 - 54. ISSN 1097-6256

Malki, K and Mineur, YS and Tosto, MG and Campbell, J and Karia, P and Jumabhoy, I and Sluyter, F and Crusio, WE and Schalkwyk, LC (2015) 'Pervasive and opposing effects of Unpredictable Chronic Mild Stress (UCMS) on hippocampal gene expression in BALB/cJ and C57BL/6J mouse strains.' BMC Genomics, 16 (1). ISSN 1471-2164

Malki, K and Pain, O and Tosto, MG and Du Rietz, E and Carboni, L and Schalkwyk, LC (2015) 'Identification of genes and gene pathways associated with major depressive disorder by integrative brain analysis of rat and human prefrontal cortex transcriptomes.' Translational Psychiatry, 5 (3). ISSN 2158-3188

Elliott, G and Hong, C and Xing, X and Zhou, X and Li, D and Coarfa, C and Bell, RJA and Maire, CL and Ligon, KL and Sigaroudinia, M and Gascard, P and Tlsty, TD and Harris, RA and Schalkwyk, LC and Bilenky, M and Mill, J and Farnham, PJ and Kellis, M and Marra, MA and Milosavljevic, A and Hirst, M and Stormo, GD and Wang, T and Costello, JF (2015) 'Intermediate DNA methylation is a conserved signature of genome regulation.' Nature Communications, 6. ISSN 2041-1723

Janecka, M and Manduca, A and Servadio, M and Trezza, V and Smith, R and Mill, J and Schalkwyk, LC and Reichenberg, A and Fernandes, C (2015) 'Effects of advanced paternal age on trajectories of social behavior in offspring.' Genes, Brain and Behavior, 14 (6). 443 - 453. ISSN 1601-1848

Boks, MP and Mierlo, HCV and Rutten, BPF and Radstake, TRDJ and De Witte, L and Geuze, E and Horvath, S and Schalkwyk, LC and Vinkers, CH and Broen, JCA and Vermetten, E (2015) 'Longitudinal changes of telomere length and epigenetic age related to traumatic stress and post-traumatic stress disorder.' Psychoneuroendocrinology, 51. 506 - 512. ISSN 0306-4530

Spiers, H and Hannon, E and Schalkwyk, LC and Smith, R and Wong, CCY and O'Donovan, MC and Bray, NJ and Mill, J (2015) 'Methylomic trajectories across human fetal brain development.' Genome Research, 25 (3). 338 - 352. ISSN 1088-9051

Martin, C and Tansey, KE and Schalkwyk, LC and Powell, TR (2015) 'The inflammatory cytokines: Molecular biomarkers for major depressive disorder?' Biomarkers in Medicine, 9 (2). 169 - 180. ISSN 1752-0363

De Jager, PL and Srivastava, G and Lunnon, K and Burgess, J and Schalkwyk, LC and Yu, L and Eaton, ML and Keenan, BT and Ernst, J and McCabe, C and Tang, A and Raj, T and Replogle, J and Brodeur, W and Gabriel, S and Chai, HS and Younkin, C and Younkin, SG and Zou, F and Szyf, M and Epstein, CB and Schneider, JA and Bernstein, BE and Meissner, A and Ertekin-Taner, N and Chibnik, LB and Kellis, M and Mill, J and Bennett, DA (2014) 'Alzheimer's disease: Early alterations in brain DNA methylation at ANK1, BIN1, RHBDF2 and other loci.' Nature Neuroscience, 17 (9). 1156 - 1163. ISSN 1097-6256

Lunnon, K and Smith, R and Hannon, E and De Jager, PL and Srivastava, G and Volta, M and Troakes, C and Al-Sarraj, S and Burrage, J and Macdonald, R and Condliffe, D and Harries, LW and Katsel, P and Haroutunian, V and Kaminsky, Z and Joachim, C and Powell, J and Lovestone, S and Bennett, DA and Schalkwyk, LC and Mill, J (2014) 'Methylomic profiling implicates cortical deregulation of ANK1 in Alzheimer's disease.' Nature Neuroscience, 17 (9). 1164 - 1170. ISSN 1097-6256

Malki, K and Keers, R and Tosto, MG and Lourdusamy, A and Carboni, L and Domenici, E and Uher, R and McGuffin, P and Schalkwyk, LC (2014) 'The endogenous and reactive depression subtypes revisited: integrative animal and human studies implicate multiple distinct molecular mechanisms underlying major depressive disorder.' BMC Medicine, 12. ISSN 1741-7015

Punapart, M and Eltermaa, M and Oflijan, J and Sütt, S and Must, A and Kõks, S and Schalkwyk, LC and Fernandes, C and Vasar, E and Soomets, U and Terasmaa, A (2014) 'Effect of chronic valproic Acid treatment on hepatic gene expression profile in wfs1 knockout mouse.' PPAR Research, 2014. ISSN 1687-4757

Smith, RG and Fernandes, C and Kember, R and Schalkwyk, LC and Buxbaum, J and Reichenberg, A and Mill, J (2014) 'Transcriptomic changes in the frontal cortex associated with paternal age.' Molecular Autism, 5 (1). ISSN 2040-2392

Powell, TR and McGuffin, P and D'Souza, UM and Cohen-Woods, S and Hosang, GM and Martin, C and Matthews, K and Day, RK and Farmer, AE and Tansey, KE and Schalkwyk, LC (2014) 'Putative transcriptomic biomarkers in the inflammatory cytokine pathway differentiate major depressive disorder patients from control subjects and bipolar disorder patients.' PLoS ONE, 9 (3). ISSN 1932-6203

Bell, JT and Loomis, AK and Butcher, LM and Gao, F and Zhang, B and Hyde, CL and Sun, J and Wu, H and Ward, K and Harris, J and Scollen, S and Davies, MN and Schalkwyk, LC and Mill, J and Williams, FMK and Li, N and Deloukas, P and Beck, S and McMahon, SB and Wang, J and John, SL and Spector, TD (2014) 'Differential methylation of the TRPA1 promoter in pain sensitivity.' Nature Communications, 5. ISSN 2041-1723

Malki, K and Pain, O and Du Rietz, E and Tosto, MG and Paya-Cano, J and Sandnabba, KN and de Boer, S and Schalkwyk, LC and Sluyter, F (2014) 'Genes and Gene Networks Implicated in Aggression Related Behaviour.' Neurogenetics, 15 (4). 255 - 266. ISSN 1364-6745

Tarantino, LM and Schalkwyk, LC (2014) 'Introduction to mammalian genome special issue: Genetics of behavior.' Mammalian Genome, 25 (1-2). 1 - 2. ISSN 0938-8990

Wong, CCY and Meaburn, EL and Ronald, A and Price, TS and Jeffries, AR and Schalkwyk, LC and Plomin, R and Mill, J (2014) 'Methylomic analysis of monozygotic twins discordant for autism spectrum disorder and related behavioural traits.' Molecular Psychiatry, 19 (4). 495 - 503. ISSN 1359-4184

Pidsley, R and Viana, J and Hannon, E and Spiers, H and Troakes, C and Al-saraj, S and Mechawar, N and Turecki, G and Schalkwyk, LC and Bray, NJ and Mill, J (2014) 'Methylomic profiling of human brain tissue supports a neurodevelopmental origin for schizophrenia.' Genome Biology, 15 (10). ISSN 1474-7596

Powell, TR and Powell-Smith, G and Haddley, K and Mcguffin, P and Quinn, J and Schalkwyk, LC and Farmer, AE and D'Souza, UM (2014) 'Mood-stabilizers differentially affect housekeeping gene expression in human cells.' International Journal of Methods in Psychiatric Research, 23 (2). 279 - 288. ISSN 1049-8931

Malki, K and Tosto, MG and Jumabhoy, I and Lourdusamy, A and Sluyter, F and Craig, I and Uher, R and McGuffin, P and Schalkwyk, LC (2013) 'Integrative mouse and human mRNA studies using WGCNA nominates novel candidate genes involved in the pathogenesis of major depressive disorder.' Pharmacogenomics, 14 (16). 1979 - 1990. ISSN 1462-2416

Powell, TR and Smith, RG and Hackinger, S and Schalkwyk, LC and Uher, R and McGuffin, P and Mill, J and Tansey, KE (2013) 'DNA methylation in interleukin-11 predicts clinical response to antidepressants in GENDEP.' Translational Psychiatry, 3. ISSN 2158-3188

Powell, TR and Schalkwyk, LC and Heffernan, AL and Breen, G and Lawrence, T and Price, T and Farmer, AE and Aitchison, KJ and Craig, IW and Danese, A and Lewis, C and McGuffin, P and Uher, R and Tansey, KE and D'Souza, UM (2013) 'Tumor necrosis factor and its targets in the inflammatory cytokine pathway are identified as putative transcriptomic biomarkers for escitalopram response.' European Neuropsychopharmacology, 23 (9). 1105 - 1114. ISSN 0924-977X

Powell, TR and Tansey, KE and Breen, G and Farmer, AE and Craig, IW and Uher, R and McGuffin, P and D'Souza, UM and Schalkwyk, LC (2013) 'ATP-binding cassette sub-family F member 1 (ABCF1) is identified as a putative therapeutic target of escitalopram in the inflammatory cytokine pathway.' Journal of Psychopharmacology, 27 (7). 609 - 615. ISSN 0269-8811

Smith, RG and Reichenberg, A and Kember, RL and Buxbaum, JD and Schalkwyk, LC and Fernandes, C and Mill, J (2013) 'Advanced paternal age is associated with altered DNA methylation at brain-expressed imprinted loci in inbred mice: Implications for neuropsychiatric disease.' Molecular Psychiatry, 18 (6). 635 - 636. ISSN 1359-4184

Pidsley, R and Wong, CCY and Volta, M and Lunnon, K and Mill, J and Schalkwyk, LC (2013) 'A data-driven approach to preprocessing Illumina 450K methylation array data.' BMC Genomics, 14. ISSN 1471-2164

Lill, M and Kõks, S and Soomets, U and Schalkwyk, LC and Fernandes, C and Lutsar, I and Taba, P (2013) 'Peripheral blood RNA gene expression profiling in patients with bacterial meningitis.' Frontiers in Neuroscience, 7. ISSN 1662-4548

Kõks, S and Overall, RW and Ivask, M and Soomets, U and Guha, M and Vasar, E and Fernandes, C and Schalkwyk, LC (2013) 'Silencing of the WFS1 gene in HEK cells induces pathways related to neurodegeneration and mitochondrial damage.' Physiological Genomics, 45 (5). 182 - 190. ISSN 1094-8341

Navarrete, K and Pedroso, I and De Jong, S and Stefansson, H and Steinberg, S and Stefansson, K and Ophoff, RA and Schalkwyk, LC and Collier, DA (2013) 'TCF4 (e2-2; ITF2): A schizophrenia-associated gene with pleiotropic effects on human disease.' American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics, 162 (1). 1 - 16. ISSN 1552-4841

Pidsley, R and Fernandes, C and Viana, J and Paya-Cano, JL and Liu, L and Smith, RG and Schalkwyk, LC and Mill, J (2012) 'DNA methylation at the Igf2/H19 imprinting control region is associated with cerebellum mass in outbred mice.' Molecular Brain, 5. ISSN 1756-6606

Malki, K and Lourdusamy, A and Binder, E and Payá-Cano, J and Sluyter, F and Craig, I and Keers, R and McGuffin, P and Uher, R and Schalkwyk, LC (2012) 'Antidepressant-dependent mRNA changes in mouse associated with hippocampal neurogenesis in a mouse model of depression.' Pharmacogenetics and Genomics, 22 (11). 765 - 776. ISSN 1744-6872

Parsons, MJ and Grimm, C and Paya-Cano, J and Fernandes, C and Liu, L and Philip, VM and Chesler, EJ and Nietfeld, W and Lehrach, H and Schalkwyk, LC (2012) 'Genetic variation in hippocampal microRNA expression differences in C57BL/6 J X DBA/2 J (BXD) recombinant inbred mouse strains.' BMC Genomics, 13. ISSN 1471-2164

Jeffries, AR and Perfect, LW and Ledderose, J and Schalkwyk, LC and Bray, NJ and Mill, J and Price, J (2012) 'Stochastic choice of allelic expression in human neural stem cells.' Stem Cells, 30 (9). 1938 - 1947. ISSN 1066-5099

Malki, K and Campbell, J and Davies, M and Keers, R and Uher, R and Ward, M and Paya-Cano, J and Aitchinson, KJ and Binder, E and Sluyter, F and Kuhn, K and Selzer, S and Craig, I and McGuffin, P and Schalkwyk, LC (2012) 'Pharmacoproteomic investigation into antidepressant response in two mouse inbred strains.' Proteomics, 12 (14). 2355 - 2365. ISSN 1615-9853

Kember, RL and Dempster, EL and Lee, THA and Schalkwyk, LC and Mill, J and Fernandes, C (2012) 'Maternal separation is associated with strain-specific responses to stress and epigenetic alterations to Nr3c1, Avp, and Nr4a1 in mouse.' Brain and Behavior, 2 (4). 455 - 467. ISSN 2162-3279

Davies, MN and Volta, M and Pidsley, R and Lunnon, K and Dixit, A and Lovestone, S and Coarfa, C and Harris, RA and Milosavljevic, A and Troakes, C and Al-Sarraj, S and Dobson, R and Schalkwyk, LC and Mill, J (2012) 'Functional annotation of the human brain methylome identifies tissue-specific epigenetic variation across brain and blood.' Genome Biology, 13 (6). ISSN 1465-6906

Keers, R and Pedroso, I and Breen, G and Aitchison, KJ and Nolan, PM and Cichon, S and Nöthen, MM and Rietschel, M and Schalkwyk, LC and Fernandes, C (2012) 'Reduced anxiety and depression-like behaviours in the circadian period mutant mouse afterhours.' PLoS ONE, 7 (6). ISSN 1932-6203

Binder, E and Malki, K and Paya-Cano, JL and Fernandes, C and Aitchison, KJ and Mathé, AA and Sluyter, F and Schalkwyk, LC (2011) 'Antidepressants and the resilience to early-life stress in inbred mouse strains.' Pharmacogenetics and Genomics, 21 (12). 779 - 789. ISSN 1744-6872

Dempster, EL and Pidsley, R and Schalkwyk, LC and Owens, S and Georgiades, A and Kane, F and Kalidindi, S and Picchioni, M and Kravariti, E and Toulopoulou, T and Murray, RM and Mill, J (2011) 'Disease-associated epigenetic changes in monozygotic twins discordant for schizophrenia and bipolar disorder.' Human Molecular Genetics, 20 (24). 4786 - 4796. ISSN 0964-6906

Kõks, S and Soomets, U and Plaas, M and Terasmaa, A and Noormets, K and Tillmann, V and Vasar, E and Fernandes, C and Schalkwyk, LC (2011) 'Hypothalamic gene expression profile indicates a reduction in G protein signaling in the Wfs1 mutant mice.' Physiological Genomics, 43 (24). 1351 - 1358. ISSN 1094-8341

Sikk, K and Kõks, S and Soomets, U and Schalkwyk, LC and Fernandes, C and Haldre, S and Aquilonius, SM and Taba, P (2011) 'Peripheral Blood RNA expression profiling in illicit methcathinone users reveals effect on immune system.' Frontiers in Genetics, 2 (AUG). ISSN 1664-8021

Malki, K and Uher, R and Paya-Cano, J and Binder, E and Rietschel, M and Zobel, A and Mors, O and Hauser, J and Henigsberg, N and Jerman, B and Souery, D and Placentino, A and Ng, MY and Cohen-Woods, S and Sluyter, F and Farmer, A and Aitchison, KJ and Craig, IW and Lewis, CM and McGuffin, P and Schalkwyk, LC (2011) 'Convergent animal and human evidence suggests a role of PPM1A gene in response to antidepressants.' Biological Psychiatry, 69 (4). 360 - 365. ISSN 0006-3223

Davies, MN and Meaburn, EL and Schalkwyk, LC (2010) 'Gene set enrichment; A problem of pathways.' Briefings in Functional Genomics, 9 (5-6). 385 - 390. ISSN 2041-2649

Kember, RL and Fernandes, C and Tunbridge, EM and Liu, L and Payá-Cano, JL and Parsons, MJ and Schalkwyk, LC (2010) 'A B2 SINE insertion in the Comt1 gene (Comt1 <sup>B2i</sup> ) results in an overexpressing, behavior modifying allele present in classical inbred mouse strains.' Genes, Brain and Behavior, 9 (8). 925 - 932. ISSN 1601-1848

Davis, OSP and Butcher, LM and Docherty, SJ and Meaburn, EL and Curtis, CJC and Simpson, MA and Schalkwyk, LC and Plomin, R (2010) 'A three-stage genome-wide association study of general cognitive ability: Hunting the small effects.' Behavior Genetics, 40 (6). 759 - 767. ISSN 0001-8244

Lad, HV and Liu, L and Paya-Cano, JL and Parsons, MJ and Kember, R and Fernandes, C and Schalkwyk, LC (2010) 'Behavioural battery testing: Evaluation and behavioural outcomes in 8 inbred mouse strains.' Physiology and Behavior, 99 (3). 301 - 316. ISSN 0031-9384

Docherty, SJ and Davis, OSP and Kovas, Y and Meaburn, EL and Dale, PS and Petrill, SA and Schalkwyk, LC and Plomin, R (2010) 'A genome-wide association study identifies multiple loci associated with mathematics ability and disability.' Genes, Brain and Behavior, 9 (2). 234 - 247. ISSN 1601-1848

Schalkwyk, LC and Meaburn, EL and Smith, R and Dempster, EL and Jeffries, AR and Davies, MN and Plomin, R and Mill, J (2010) 'Allelic Skewing of DNA Methylation Is Widespread across the Genome.' American Journal of Human Genetics, 86 (2). 196 - 212. ISSN 0002-9297

Meaburn, EL and Schalkwyk, LC and Mill, J (2010) 'Allele-specific methylation in the human genome: Implications for genetic studies of complex disease.' Epigenetics, 5 (7). 578 - 582. ISSN 1559-2294

Ronald, A and Butcher, LM and Docherty, SJ and Davis, OSP and Schalkwyk, LC and Craig, IW and Plomin, R (2010) 'Response to comment by Stuart Macgregor.' Behavior Genetics, 40 (1). 48 - ?. ISSN 0001-8244

Ronald, A and Butcher, LM and Docherty, S and Davis, OSP and Schalkwyk, LC and Craig, IW and Plomin, R (2010) 'A genome-wide association study of social and non-social autistic-like traits in the general population using pooled DNA, 500 K SNP microarrays and both community and diagnosed autism replication samples.' Behavior Genetics, 40 (1). 31 - 45. ISSN 0001-8244

Smith, RG and Kember, RL and Mill, J and Fernandes, C and Schalkwyk, LC and Buxbaum, JD and Reichenberg, A (2009) 'Advancing paternal age is associated with deficits in social and exploratory behaviors in the offspring: A mouse model.' PLoS ONE, 4 (12). ISSN 1932-6203

Kõks, S and Velthut, A and Sarapik, A and Altmäe, S and Reinmaa, E and Schalkwyk, LC and Fernandes, C and Lad, HV and Soomets, U and Jaakma, U and Salumets, A (2009) 'The differential transcriptome and ontology profiles of floating and cumulus granulosa cells in stimulated human antral follicles.' Molecular Human Reproduction, 16 (4). 229 - 240. ISSN 1360-9947

Meaburn, EL and Fernandes, C and Craig, IW and Plomin, R and Schalkwyk, LC (2009) 'Assessing Individual Differences in Genome-Wide Gene Expression in Human Whole Blood: Reliability Over Four Hours and Stability Over 10 Months.' Twin Research and Human Genetics, 12 (4). 372 - 380. ISSN 1369-0523

Kõks, S and Soomets, U and Paya-Cano, JL and Fernandes, C and Luuk, H and Plaas, M and Terasmaa, A and Tillmann, V and Noormets, K and Vasar, E and Schalkwyk, LC (2009) 'Wfs1 gene deletion causes growth retardation in mice and interferes with the growth hormone pathway.' Physiological Genomics, 37 (3). 249 - 259. ISSN 1094-8341

Kas, MJH and Gelegen, C and Schalkwyk, LC and Collier, DA (2009) 'Interspecies comparisons of functional genetic variations and their implications in neuropsychiatry.' American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics, 150 (3). 309 - 317. ISSN 1552-4841

Davis, OSP and Plomin, R and Schalkwyk, LC (2009) 'The SNPMaP package for R: A framework for genome-wide association using DNA pooling on microarrays.' Bioinformatics, 25 (2). 281 - 283. ISSN 1367-4803

Parsons, MJ and Grimm, CH and Paya-Cano, JL and Sugden, K and Nietfeld, W and Lehrach, H and Schalkwyk, LC (2008) 'Using hippocampal microRNA expression differences between mouse inbred strains to characterise miRNA function.' Mammalian Genome, 19 (7-8). 552 - 560. ISSN 0938-8990

Meaburn, EL and Harlaar, N and Craig, IW and Schalkwyk, LC and Plomin, R (2008) 'Quantitative trait locus association scan of early reading disability and ability using pooled DNA and 100K SNP microarrays in a sample of 5760 children.' Molecular Psychiatry, 13 (7). 729 - 740. ISSN 1359-4184

Kõks, S and Fernandes, C and Kurrikoff, K and Vasar, E and Schalkwyk, LC (2008) 'Gene expression profiling reveals upregulation of Tlr4 receptors in Cckb receptor deficient mice.' Behavioural Brain Research, 188 (1). 62 - 70. ISSN 0166-4328

Caspi, A and Williams, B and Kim-Cohen, J and Craig, IW and Milne, BJ and Poulton, R and Schalkwyk, LC and Taylor, A and Werts, H and Moffitt, TE (2007) 'Moderation of breastfeeding effects on the IQ by genetic variation in fatty acid metabolism.' Proceedings of the National Academy of Sciences of the United States of America, 104 (47). 18860 - 18865. ISSN 0027-8424

Docherty, SJ and Butcher, LM and Schalkwyk, LC and Plomin, R (2007) 'Applicability of DNA pools on 500 KSNP microarrays for cost-effective initial screens in genomewide association studies.' BMC Genomics, 8. ISSN 1471-2164

Lad, HV and Liu, L and Payá-Cano, JL and Fernandes, C and Schalkwyk, LC (2007) 'Quantitative traits for the tail suspension test: Automation, optimization, and BXD RI mapping.' Mammalian Genome, 18 (6-7). 482 - 491. ISSN 0938-8990

Kas, MJH and Fernandes, C and Schalkwyk, LC and Collier, DA (2007) 'Genetics of behavioural domains across the neuropsychiatric spectrum; Of mice and men.' Molecular Psychiatry, 12 (4). 324 - 330. ISSN 1359-4184

Schalkwyk, LC and Fernandes, C and Nash, MW and Kurrikoff, K and Vasar, E and Kõks, S (2007) 'Interpretation of knockout experiments: The congenic footprint.' Genes, Brain and Behavior, 6 (3). 299 - 303. ISSN 1601-1848

Sugden, K and D'Souza, UM and Aitchison, KJ and Schalkwyk, LC and McGuffin, P and Byers, H and Campbell, J and Hye, A and Pariante, CM (2007) 'P.1.31 Gene expression analyses of mouse fibroblast cell line L929 after antidepressant treatment.' European Neuropsychopharmacology, 17. S27 - S28. ISSN 0924-977X

Plomin, R and Schalkwyk, LC (2007) 'Microarrays.' Developmental Science, 10 (1). 19 - 23. ISSN 1363-755X

Fernandes, C and Hoyle, E and Dempster, E and Schalkwyk, LC and Collier, DA (2006) 'Performance deficit of α7 nicotinic receptor knockout mice in a delayed matching-to-place task suggests a mild impairment of working/episodic-like memory.' Genes, Brain and Behavior, 5 (6). 433 - 440. ISSN 1601-1848

Meaburn, E and Butcher, LM and Schalkwyk, LC and Plomin, R (2006) 'Genotyping pooled DNA using 100K SNP microarrays: A step towards genomewide association scans.' Nucleic Acids Research, 34 (4). ISSN 0305-1048

D'Souza, U and Sugden, K and Aitchison, KJ and Schalkwyk, LC and McGuffin, P and Pariante, M (2006) 'S.16.02 Depression: the GENDEP study.' European Neuropsychopharmacology, 16. S187 - S187. ISSN 0924-977X

Galsworthy, MJ and Paya-Cano, JL and Liu, L and Monleón, S and Gregoryan, G and Fernandes, C and Schalkwyk, LC and Plomin, R (2005) 'Assessing reliability, heritability and general cognitive ability in a battery of cognitive tasks for laboratory mice.' Behavior Genetics, 35 (5). 675 - 692. ISSN 0001-8244

Butcher, LM and Meaburn, E and Knight, J and Sham, PC and Schalkwyk, LC and Craig, IW and Plomin, R (2005) 'SNPs, microarrays and pooled DNA: Identification of four loci associated with mild mental impairment in a sample of 6000 children.' Human Molecular Genetics, 14 (10). 1315 - 1325. ISSN 0964-6906

Meaburn, E and Butcher, LM and Liu, L and Fernandes, C and Hansen, V and Al-Chalabi, A and Plomin, R and Craig, I and Schalkwyk, LC (2005) 'Genotyping DNA pools on microarrays: Tackling the QTL problem of large samples and large numbers of SNPs.' BMC Genomics, 6. ISSN 1471-2164

Butcher, LM and Meaburn, E and Dale, PS and Sham, P and Schalkwyk, LC and Craig, IW and Plomin, R (2005) 'Association analysis of mild mental impairment using DNA pooling to screen 432 brain-expressed single-nucleotide polymorphisms.' Molecular Psychiatry, 10 (4). 384 - 392. ISSN 1359-4184

Simpson, CL and Knight, J and Butcher, LM and Hansen, VK and Meaburn, EL and Schalkwyk, LC and Craig, IW and Powell, JF and Sham, PC and Al-Chalabi, A (2005) 'A central resource for accurate allele frequency estimation from pooled DNA genotyped on DNA microarrays.' Nucleic Acids Research, 33 (3). ISSN 0305-1048

Fernandes, C and Liu, L and Paya-Cano, JL and Gregorová, S and Forejt, J and Schalkwyk, LC (2004) 'Behavioral characterization of wild derived male mice (Mus musculus musculus) of the PWD/Ph inbred strain: High exploration compared to C57BL/6J.' Behavior Genetics, 34 (6). 621 - 630. ISSN 0001-8244

Craig, IW and Mill, J and Craig, GM and Loat, C and Schalkwyk, LC (2004) 'Application of microarrays to the analysis of the inactivation status of human X-linked genes expressed in lymphocytes.' European Journal of Human Genetics, 12 (8). 639 - 646. ISSN 1018-4813

Ben Abdelkhalek, H and Beckers, A and Schuster-Gossler, K and Pavlova, MN and Burkhardt, H and Lickert, H and Rossant, J and Reinhardt, R and Schalkwyk, LC and Müller, I and Herrmann, BG and Ceolin, M and Rivera-Pomar, R and Gossler, A (2004) 'The mouse homeobox gene Not is required for caudal notochord development and affected by the truncate mutation.' Genes and Development, 18 (14). 1725 - 1736. ISSN 0890-9369

Fernandes, C and Paya-Cano, JL and Sluyter, F and D'Souza, U and Plomin, R and Schalkwyk, LC (2004) 'Hippocampal gene expression profiling across eight mouse inbred strains: Towards understanding the molecular basis for behaviour.' European Journal of Neuroscience, 19 (9). 2576 - 2582. ISSN 0953-816X

Churchill, GA and Airey, DC and Allayee, H and Angel, JM and Attie, AD and Beatty, J and Beavis, WD and Belknap, JK and Bennett, B and Berrettini, W and Bleich, A and Bogue, M and Broman, KW and Buck, KJ and Buckler, E and Burmeister, M and Chesler, EJ and Cheverud, JM and Clapcote, S and Cook, MN and Cox, RD and Crabbe, JC and Crusio, WE and Darvasi, A and Deschepper, CF and Doerge, RW and Farber, CR and Forejt, J and Gaile, D and Garlow, SJ and Geiger, H and Gershenfeld, H and Gordon, T and Gu, J and Gu, W and de Haan, G and Hayes, NL and Heller, C and Himmelbauer, H and Hitzemann, R and Hunter, K and Hsu, HC and Iraqi, FA and Ivandic, B and Jacob, HJ and Jansen, RC and Jepsen, KJ and Johnson, DK and Johnson, TE and Kempermann, G and Kendziorski, C and Kotb, M and Kooy, RF and Llamas, B and Lammert, F and Lassalle, JM and Lowenstein, PR and Lu, L and Lusis, A and Manly, KF and Marcucio, R and Matthews, D and Medrano, JF and Miller, DR and Mittleman, G and Mock, BA and Mogil, JS and Montagutelli, X and Morahan, G and Morris, DG and Mott, R and Nadeau, JH and Nagase, H and Nowakowski, RS and O'Hara, BF and Osadchuk, AV and Page, GP and Paigen, B and Paigen, K and Palmer, AA and Pan, HJ and Peltonen-Palotie, L and Peirce, J and Pomp, D and Pravenec, M and Prows, DR and Qi, Z and Reeves, RH and Roder, J and Rosen, GD and Schadt, EE and Schalkwyk, LC and Seltzer, Z and Shimomura, K and Shou, S and Sillanpää, MJ and Siracusa, LD and Snoeck, HW and Spearow, JL (2004) 'The Collaborative Cross, a community resource for the genetic analysis of complex traits.' Nature Genetics, 36 (11). 1133 - 1137. ISSN 1061-4036

Abiola, O and Angel, JM and Avner, P and Bachmanov, AA and Belknap, JK and Bennett, B and Blankenhorn, EP and Blizard, DA and Bolivar, V and Brockmann, GA and Buck, KJ and Bureau, JF and Casley, WL and Chesler, EJ and Cheverud, JM and Churchill, GA and Cook, M and Crabbe, JC and Crusio, WE and Darvasi, A and de Haan, G and Demant, P and Doerge, RW and Elliott, RW and Farber, CR and Flaherty, L and Flint, J and Gershenfeld, H and Gibson, JP and Gu, J and Gu, W and Himmelbauer, H and Hitzemann, R and Hsu, HC and Hunter, K and Iraqi, FA and Jansen, RC and Johnson, TE and Jones, BC and Kempermann, G and Lammert, F and Lu, L and Manly, KF and Matthews, DB and Medrano, JF and Mehrabian, M and Mittleman, G and Mock, BA and Mogil, JS and Montagutelli, X and Morahan, G and Mountz, JD and Nagase, H and Nowakowski, RS and O'Hara, BF and Osadchuk, AV and Paigen, B and Palmer, AA and Peirce, JL and Pomp, D and Rosemann, M and Rosen, GD and Schalkwyk, LC and Seltzer, Z and Settle, S and Shimomura, K and Shou, S and Sikela, JM and Siracusa, LD and Spearow, JL and Teuscher, C and Threadgill, DW and Toth, LA and Toye, AA and Vadasz, C and Van Zant, G and Wakeland, E and Williams, RW and Zhang, HG and Zou, F (2003) 'The nature and identification of quantitative trait loci: A community's view.' Nature Reviews Genetics, 4 (11). 911 - 916. ISSN 1471-0056

Sluyter, F and Schalkwyk, LC (2003) 'Aggression across species.' Behavior Genetics, 33 (5). 457 - 460. ISSN 0001-8244

Mill, J and Galsworthy, MJ and Paya-Cano, JL and Sluyter, F and Schalkwyk, LC and Plomin, R and Asherson, P (2002) 'Home-cage activity in heterogeneous stock (HS) mice as a model of baseline activity.' Genes, Brain and Behavior, 1 (3). 166 - 173. ISSN 1601-1848

Klose, J and Nock, C and Herrmann, M and Stühler, K and Marcus, K and Blüggel, M and Krause, E and Schalkwyk, LC and Rastan, S and Brown, SDM and Büssow, K and Himmelbauer, H (2002) 'Genetic analysis of the mouse brain proteome.' Nature Genetics, 30 (4). 385 - 393. ISSN 1061-4036

Schalkwyk, LC and Cusack, B and Dunkel, I and Hopp, M and Kramer, M and Palczewski, S and Piefke, J and Scheel, S and Weiher, M and Wenske, G and Lehrach, H and Himmelbauer, H (2001) 'Advanced integrated mouse YAC map including BAC framework.' Genome Research, 11 (12). 2142 - 2150. ISSN 1088-9051

Gösele, C and Hong, L and Kreitler, T and Rossmann, M and Hieke, B and Groß, U and Kramer, M and Himmelbauer, H and Bihoreau, MT and Kwitek-Black, AE and Twigger, S and Tonellato, PJ and Jacob, HJ and Schalkwyk, LC and Lindpaintner, K and Ganten, D and Lehrach, H and Knoblauch, M (2000) 'High-throughput scanning of the rat genome using interspersed repetitive sequence-PCR markers.' Genomics, 69 (3). 287 - 294. ISSN 0888-7543

Leong, WL and Dobson, MJ and Logsdon, JM and Abdel-Majid, RM and Schalkwyk, LC and Guernsey, DL and Neumann, PE (2000) 'ETn insertion in the mouse Adcy1 gene: Transcriptional and phylogenetic analyses.' Mammalian Genome, 11 (2). 97 - 103. ISSN 0938-8990

Schalkwyk, LC and Himmelbauer, H and Lehrach, H (1999) 'Toward the mammalian transcript map.' Archiv fur Tierzucht, 42 (6 SUPP). 67 - 73. ISSN 0003-9438

Schalkwyk, LC and Jung, M and Daser, A and Weiher, M and Walter, J and Himmelbauer, H and Lehrach, H (1999) 'Panel of microsatellite markers for whole-genome scans and radiation hybrid mapping and a mouse family tree.' Genome Research, 9 (9). 878 - 887. ISSN 1088-9051

Zhu, B and Smith, JA and Tracey, SM and Konfortov, BA and Welzel, K and Schalkwyk, LC and Lehrach, H and Kollers, S and Masabanda, J and Buitkamp, J and Fries, R and Williams, JL and Ross Miller, J (1999) 'A 5x genome coverage bovine BAC library: Production, characterization, and distribution.' Mammalian Genome, 10 (7). 706 - 709. ISSN 0938-8990

Hills, D and Tracey, S and Masabanda, J and Fries, R and Schalkwyk, LC and Lehrach, H and Miller, JR and Williams, JL (1999) 'A bovine YAC library containing four- to five-fold genome equivalents.' Mammalian Genome, 10 (8). 837 - 838. ISSN 0938-8990

Nock, C and Gauss, C and Schalkwyk, LC and Klose, J and Lehrach, H and Himmelbauer, H (1999) 'Technology development at the interface of proteome research and genomics: Mapping nonpolymorphic proteins on the physical map of mouse chromosomes.' Electrophoresis, 20 (4-5). 1027 - 1032. ISSN 0173-0835

Schalkwyk, LC and Weiher, M and Kirby, M and Cusack, B and Himmelbauer, H and Lehrach, H (1998) 'Refined radiation hybrid map of mouse Chromosome 17.' Mammalian Genome, 9 (10). 807 - 811. ISSN 0938-8990

Himmelbauer, H and Dunkel, I and Otto, GW and Burgtorf, C and Schalkwyk, LC and Lehrach, H (1998) 'Complex probes for high-throughput parallel genetic mapping of genomic mouse BAC clones.' Mammalian Genome, 9 (8). 611 - 616. ISSN 0938-8990

Abdel-Majid, RM and Leong, WL and Schalkwyk, LC and Smallman, DS and Wong, ST and Storm, DR and Fine, A and Dobson, MJ and Guernsey, DL and Neumann, PE (1998) 'Loss of adenylyl cyclase I activity disrupts patterning of mouse somatosensory cortex.' Nature Genetics, 19 (3). 289 - 291. ISSN 1061-4036

Priestley, A and Beamish, HJ and Gell, D and Amatucci, AG and Muhlmann-Diaz, MC and Singleton, BK and Smith, GCM and Blunt, T and Schalkwyk, LC and Bedford, JS and Jackson, SP and Jeggo, PA and Taccioli, GE (1998) 'Molecular and biochemical characterisation of DNA-dependent protein kinase-defective rodent mutant irs-20.' Nucleic Acids Research, 26 (8). 1965 - 1973. ISSN 0305-1048

Himmelbauer, H and Wedemeyer, N and Haaf, T and Wanker, EE and Schalkwyk, LC and Lehrach, H (1998) 'IRS-PCR-based genetic mapping of the huntingtin interacting protein gene (HIP1) on mouse chromosome 5.' Mammalian Genome, 9 (1). 26 - 31. ISSN 0938-8990

Crnogorac-Jurcevic, T and Brown, JR and Lehrach, H and Schalkwyk, LC (1997) 'Tetraodon fluviatilis, a new puffer fish model for genome studies.' Genomics, 41 (2). 177 - 184. ISSN 0888-7543

Cai, L and Schalkwyk, LC and Schoeberlein-Stehli, A and Zee, RYL and Smith, A and Haaf, T and Georges, M and Lehrach, H and Lindpaintner, K (1997) 'Construction and characterization of a 10-genome equivalent yeast artificial chromosome library for the laboratory rat, Rattus norvegicus.' Genomics, 39 (3). 385 - 392. ISSN 0888-7543

Hoheisel, JD and Maier, E and Mott, R and McCarthy, L and Grigoriev, AV and Schalkwyk, LC and Nizetic, D and Francis, F and Lehrach, H (1993) 'High resolution cosmid and P1 maps spanning the 14 Mb genome of the fission yeast S. pombe.' Cell, 73 (1). 109 - 120. ISSN 0092-8674

Schalkwyk, LC and Charlebois, RL and Doolittle, WF (1993) 'Insertion sequences on plasmid pHV1 of Haloferax volcanii.' Canadian Journal of Microbiology, 39 (2). 201 - 206. ISSN 0008-4166

Cohen, A and Lam, WL and Charlebois, RL and Doolittle, WF and Schalkwyk, LC (1992) 'Localizing genes on the map of the genome of Haloferax volcanii, one of the Archaea.' Proceedings of the National Academy of Sciences of the United States of America, 89 (5). 1602 - 1606. ISSN 0027-8424

Doolittle, WF and Lam, WL and Schalkwyk, LC and Charlebois, RL and Cline, SW and Cohen, A (1992) 'Progress in developing the genetics of the halobacteria.' Biochemical Society symposium, 58. 73 - 78. ISSN 0067-8694

Charlebois, RL and Schalkwyk, LC and Hofman, JD and Doolittle, WF (1991) 'Detailed physical map and set of overlapping clones covering the genome of the archaebacterium Haloferax volcanii DS2.' Journal of Molecular Biology, 222 (3). 509 - 524. ISSN 0022-2836

Charlebois, RL and Hofman, JD and Schalkwyk, LC and Lam, WL and Doolittle, WF (1989) 'Genome mapping in halobacteria.' Canadian Journal of Microbiology, 35 (1). 21 - 29. ISSN 0008-4166

Cline, SW and Lam, WL and Charlebois, RL and Schalkwyk, LC and Doolittle, WF (1989) 'Transformation methods for halophilic archaebacteria.' Canadian Journal of Microbiology, 35 (1). 148 - 152. ISSN 0008-4166

Cline, SW and Schalkwyk, LC and Doolittle, WF (1989) 'Transformation of the archaebacterium Halobacterium volcanii with genomic DNA.' Journal of bacteriology, 171 (9). 4987 - 4991. ISSN 0021-9193

Hofman, JD and Schalkwyk, LC and Doolittle, WF (1986) 'ISH51: A large, degenerate family of insertion sequence-like elements in the genome of the archaehacterium, Halobacterium volcanii.' Nucleic Acids Research, 14 (17). 6983 - 7000. ISSN 0305-1048

Conference or Workshop Item

Spiers, H and Bray, NJ and Hannon, E and Schalkwyk, LC and Wong, CC and Pidsley, R and Smith, RG and Mill, J (2015) Dynamic and sex-specific changes in DNA methylation during human fetal brain development. In: UNSPECIFIED, ? - ?.

D'Souza, UM and Sugden, K and Pariante, CM and Byers, H and Ward, M and Schalkwyk, LC and McGuffin, P and Aitchison, KJ (2006) Effects of antidepressant treatment on gene expression in mouse cultured cells. In: XIV World Congress on Psychiatric Genetics, 2006-10-28 - 2006-11-01, Cagliari, Italy.

Butcher, LM and Meaburn, EL and Craig, IW and Schalkwyk, LC and Plomin, R (2006) A genomewide association scan for GE interplay in childhood. In: XIV World Congress on Psychiatric Genetics, 2006-10-28 - 2006-11-01, Cagliari, Italy.

Paya-Cano, JL and Sluyter, F and Mineur, YS and Fernandes, C and Crusio, WE and Schalkwyk, LC (2006) P.1.a.015 Strain differences in susceptibility to unpredictable chronic mild stress as assessed by hippocampal gene expression profiling. In: UNSPECIFIED, ? - ?.

Binder, E and Paya-Cano, JL and Sluyter, F and Schalkwyk, LC (2006) P.1.d.016 The effects of a selective serotonin reuptake inhibitor and a tricyclic antidepressant on the behaviour of chronically stressed 129SvemJ and C57BL/6J mice in the hole board and forced swim test. In: UNSPECIFIED, ? - ?.

Butcher, LM and Meaburn, E and Knight, J and Sham, PC and Schalkwyk, LC and Craig, IW and Plomin, R (2005) SNPs, microarrays, and pooled DNA: Identification of four loci associated with mild mental impairment in a sample of 6000 children. In: UNSPECIFIED, ? - ?.

Butcher, LM and Meaburn, E and Knight, J and Sham, PC and Schalkwyk, LC and Craig, IW and Plomin, R (2005) Allelotyping over 10,000 SNPs using DNA pools and microarrays nominates four SNPs associated with mild mental impairment. In: UNSPECIFIED, ? - ?.

Sugden, K and D'Souza, UM and McGuffin, P and Schalkwyk, LC and Aitchison, KJ and Pariante, CM (2005) Gene expression analyses of a mouse fibroblast cell line after antidepressant treatment. In: UNSPECIFIED, ? - ?.

Meaburn, EL and Butcher, LM and Knight, J and Craig, I and Schalkwyk, LC and Plomin, R (2005) QTLs for reading disability at 7 years: Genotyping pooled DNA on 100K SNP microarrays. In: UNSPECIFIED, ? - ?.

Liu, L and Fernandes, C and Brookes, K and Paya-Capo, J and Asherson, P and Schalkwyk, LC (2005) P.2.07 Selecting over-active extremes in outbred heterogeneous stock (HS) mice for gene expression profiling: nominating novel candidate genes for over-activity. In: UNSPECIFIED, ? - ?.

Fernandes, C and Liu, L and Paya-Cano, JL and Whatley, SA and Schalkwyk, LC (2004) Correlating behaviour with gene expression: Identifying genes for anxiety and cognition in the mouse. In: UNSPECIFIED, ? - ?.

Tandon, K and Schalkwyk, LC and Checkley, S and Patel, M and Kinirons, M and Kerwin, RW and McGuffin, P and Aitchison, KJ (2002) CYP2D6 genotype and treatment with tricyclic antidepressants. In: X World Congress of Psychiatric Genetics, 2002-10-09 - 2002-10-13, Brussels, Belgium.

This list was generated on Tue Mar 19 05:33:26 2019 GMT.