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A

Abiola, O. and Angel, J. M. and Avner, P. and Bachmanov, A. A. and Belknap, J. K. and Bennett, B. and Blankenhorn, E. P. and Blizard, D. A. and Bolivar, V. and Brockmann, G. A. and Buck, K. J. and Bureau, J. F. and Casley, W. L. and Chesler, E. J. and Cheverud, J. M. and Churchill, G. A. and Cook, M. and Crabbe, J. C. and Crusio, W. E. and Darvasi, A. and De Haan, G. and Demant, P. and Doerge, R. W. and Elliott, R. W. and Farber, C. R. and Flaherty, L. and Flint, J. and Gershenfeld, H. and Gu, Jpgj and Gu, W. K. and Himmelbauer, H. and Hitzemann, R. and Hsu, H. C. and Hunter, K. and Iraqi, F. A. and Jansen, R. C. and Johnson, T. E. and Jones, B. C. and Kempermann, G. and Lammert, F. and Lu, L. and Manly, K. F. and Matthews, D. B. and Medrano, J. F. and Mehrabian, M. and Mittleman, G. and Mock, B. A. and Mogil, J. S. and Montagutelli, X. and Morahan, G. and Mountz, J. D. and Nagase, H. and Nowakowski, R. S. and O'Hara, B. R. and Osadchuk, A. V. and Paigen, B. and Palmer, A. A. and Peirce, J. L. and Pomp, D. and Rosemann, M. and Rosen, G. D. and Schalkwyk, Leonard C and Seltzer, Z. and Settle, S. and Shimomura, K. and Shou, S. M. and Sikela, J. M. and Siracusa, L. D. and Spearow, J. L. and Teuscher, C. and Threadgill, D. W. and Toth, L. A. and Toye, A. A. and Vadasz, C. and Van Zant, G. and Wakeland, E. and Williams, R. W. and Zhang, H. G. and Zou, F. (2003) 'The nature and identification of quantitative trait loci: a community's view.' Nature Reviews Genetics, 4. pp. 911-916. ISSN 1471-0056

Albhilal, Waleed Sulaiman (2015) The Arabidopsis thaliana Heat Shock Transcription Factor A1b Transcriptional Regulatory Network. PhD thesis, University of Essex.

Aljuaid, Bandar (2017) Identification and analysis of Arabidopsis thiamine pyrophosphate transporters. PhD thesis, University of Essex.

Arking, Dan E and Pulit, Sara L and Crotti, Lia and van der Harst, Pim and Munroe, Patricia B and Koopmann, Tamara T and Sotoodehnia, Nona and Rossin, Elizabeth J and Morley, Michael and Wang, Xinchen and Johnson, Andrew D and Lundby, Alicia and Gudbjartsson, Daníel F and Noseworthy, Peter A and Eijgelsheim, Mark and Bradford, Yuki and Tarasov, Kirill V and Dörr, Marcus and Müller-Nurasyid, Martina and Lahtinen, Annukka M and Nolte, Ilja M and Smith, Albert Vernon and Bis, Joshua C and Isaacs, Aaron and Newhouse, Stephen J and Evans, Daniel S and Post, Wendy S and Waggott, Daryl and Lyytikäinen, Leo-Pekka and Hicks, Andrew A and Eisele, Lewin and Ellinghaus, David and Hayward, Caroline and Navarro, Pau and Ulivi, Sheila and Tanaka, Toshiko and Tester, David J and Chatel, Stéphanie and Gustafsson, Stefan and Kumari, Meena and Morris, Richard W and Naluai, Åsa T and Padmanabhan, Sandosh and Kluttig, Alexander and Strohmer, Bernhard and Panayiotou, Andrie G and Torres, Maria and Knoflach, Michael and Hubacek, Jaroslav A and Slowikowski, Kamil and Raychaudhuri, Soumya and Kumar, Runjun D and Harris, Tamara B and Launer, Lenore J and Shuldiner, Alan R and Alonso, Alvaro and Bader, Joel S and Ehret, Georg and Huang, Hailiang and Kao, W H Linda and Strait, James B and Macfarlane, Peter W and Brown, Morris and Caulfield, Mark J and Samani, Nilesh J and Kronenberg, Florian and Willeit, Johann and Smith, J Gustav and Greiser, Karin H and Meyer zu Schwabedissen, Henriette and Werdan, Karl and Carella, Massimo and Zelante, Leopoldo and Heckbert, Susan R and Psaty, Bruce M and Rotter, Jerome I and Kolcic, Ivana and Polašek, Ozren and Wright, Alan F and Griffin, Maura and Daly, Mark J and Arnar, David O and Hólm, Hilma and Thorsteinsdottir, Unnur and Denny, Joshua C and Roden, Dan M and Zuvich, Rebecca L and Emilsson, Valur and Plump, Andrew S and Larson, Martin G and O'Donnell, Christopher J and Yin, Xiaoyan and Bobbo, Marco and D'Adamo, Adamo P and Iorio, Annamaria and Sinagra, Gianfranco and Carracedo, Angel and Cummings, Steven R and Nalls, Michael A and Jula, Antti and Kontula, Kimmo K and Marjamaa, Annukka and Oikarinen, Lasse and Perola, Markus and Porthan, Kimmo and Erbel, Raimund and Hoffmann, Per and Jöckel, Karl-Heinz and Kälsch, Hagen and Nöthen, Markus M and den Hoed, Marcel and Loos, Ruth J F and Thelle, Dag S and Gieger, Christian and Meitinger, Thomas and Perz, Siegfried and Peters, Annette and Prucha, Hanna and Sinner, Moritz F and Waldenberger, Melanie and de Boer, Rudolf A and Franke, Lude and van der Vleuten, Pieter A and Beckmann, Britt Maria and Martens, Eimo and Bardai, Abdennasser and Hofman, Nynke and Wilde, Arthur A M and Behr, Elijah R and Dalageorgou, Chrysoula and Giudicessi, John R and Medeiros-Domingo, Argelia and Barc, Julien and Kyndt, Florence and Probst, Vincent and Ghidoni, Alice and Insolia, Roberto and Hamilton, Robert M and Scherer, Stephen W and Brandimarto, Jeffrey and Margulies, Kenneth and Moravec, Christine E and Greco M, Fabiola del and Fuchsberger, Christian and O'Connell, Jeffrey R and Lee, Wai K and Watt, Graham C M and Campbell, Harry and Wild, Sarah H and El Mokhtari, Nour E and Frey, Norbert and Asselbergs, Folkert W and Leach, Irene Mateo and Navis, Gerjan and van den Berg, Maarten P and van Veldhuisen, Dirk J and Kellis, Manolis and Krijthe, Bouwe P and Franco, Oscar H and Hofman, Albert and Kors, Jan A and Uitterlinden, André G and Witteman, Jacqueline C M and Kedenko, Lyudmyla and Lamina, Claudia and Oostra, Ben A and Abecasis, Gonçalo R and Lakatta, Edward G and Mulas, Antonella and Orrú, Marco and Schlessinger, David and Uda, Manuela and Markus, Marcello R P and Völker, Uwe and Snieder, Harold and Spector, Timothy D and Ärnlöv, Johan and Lind, Lars and Sundström, Johan and Syvänen, Ann-Christine and Kivimaki, Mika and Kähönen, Mika and Mononen, Nina and Raitakari, Olli T and Viikari, Jorma S and Adamkova, Vera and Kiechl, Stefan and Brion, Maria and Nicolaides, Andrew N and Paulweber, Bernhard and Haerting, Johannes and Dominiczak, Anna F and Nyberg, Fredrik and Whincup, Peter H and Hingorani, Aroon D and Schott, Jean-Jacques and Bezzina, Connie R and Ingelsson, Erik and Ferrucci, Luigi and Gasparini, Paolo and Wilson, James F and Rudan, Igor and Franke, Andre and Mühleisen, Thomas W and Pramstaller, Peter P and Lehtimäki, Terho J and Paterson, Andrew D and Parsa, Afshin and Liu, Yongmei and van Duijn, Cornelia M and Siscovick, David S and Gudnason, Vilmundur and Jamshidi, Yalda and Salomaa, Veikko and Felix, Stephan B and Sanna, Serena and Ritchie, Marylyn D and Stricker, Bruno H and Stefansson, Kari and Boyer, Laurie A and Cappola, Thomas P and Olsen, Jesper V and Lage, Kasper and Schwartz, Peter J and Kääb, Stefan and Chakravarti, Aravinda and Ackerman, Michael J and Pfeufer, Arne and de Bakker, Paul I W and Newton-Cheh, Christopher (2014) 'Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.' Nature Genetics, 46 (8). pp. 826-836. ISSN 1061-4036

Arteaga-Salas, Jose M and Zuzan, Harry and Langdon, William B and Upton, Graham J G and Harrison, Andrew P (2008) 'An overview of image-processing methods for Affymetrix GeneChips.' Briefings in Bioinformatics, 9 (1). pp. 25-33. ISSN 1467-5463

B

Baguna, Jaume and Ruiz-Trillo, Iñaki and Paps, Jordi and Loukota, Merce and Ribera, Carles and Jondelius, Ulf and Riutort, Marta (2001) 'The first bilaterian organisms: simple or complex? New molecular evidence.' International Journal of Developmental Biology, 45. S133-S134. ISSN 0214-6282

Baguñà, Jaume and Carranza, Salvador and Paps, Jordi and Ruiz-Trillo, Inaki and Riutort, Marta (2000) 'Molecular taxonomy and phylogeny of the Tricladida.' In: Littlewood, D T J and Bray, R A, (eds.) Interrelationships of the Platyhelminthes. Systematics Association Special Volumes (60). CRC Press, London, pp. 49-56. ISBN 9780748409037

Bai, Youhuang and Dai, Xiaozhuan and Harrison, Andrew P and Johnston, Caroline and Chen, Ming (2015) 'Toward a next-generation atlas of RNA secondary structure.' Briefings in Bioinformatics, 17 (1). pp. 63-77. ISSN 1467-5463

Bechtold, Ulrike and Albhilal, Waleed Sulaiman and Fryer, Michael J and Lawson, Tracy and Richard, François and Persad, Ramona and Kim, Young-Sung and Hickman, Richard and Ott, Sascha and Beynon, James L and Buchanan-Wollaston, Vicky and Baker, Neil R and Morison, James I L and Schoeffl, Friedrich and Bowden, Laura and Sparrow, Penelope and Martin, Cathie and Mullineaux, Philip M (2013) 'Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b over-expression enhances water productivity, resistance to drought and infection.' Journal of Experimental Botany, 64. pp. 3467-3481. ISSN 0022-0957

Bell, J T and Loomis, A K and Butcher, L M and Gao, F and Zhang, B and Hyde, C L and Sun, J and Wu, H and Ward, K and Harris, J and Scollen, S and Davies, M N and Schalkwyk, Leonard C and Mill, J and Williams, F M K and Li, N and Deloukas, P and Beck, S and McMahon, S B and Wang, J and John, S L and Spector, t d (2014) 'Differential methylation of the TRPA1 promoter in pain sensitivity.' Nature Communications, 5. p. 2978. ISSN 2041-1723

Ben Abdelkhalek, Hanaa and Beckers, Anja and Schuster-Gossler, Karin and Pavlova, Maria N and Burkhardt, Hannelore and Lickert, Heiko and Rossant, Janet and Reinhardt, Richard and Schalkwyk, Leonard C and Muller, Ines and Herrmann, Bernhard G and Ceolin, Marcelo and Rivera-Pomar, Rolando and Gossler, Achim (2004) 'The mouse homeobox gene Not is required for caudal notochord development and affected 1725 by the truncate mutation.' Genes & Development, 18 (14). pp. 1725-1736. ISSN 1725-1736

Binder, E and Paya-Cano, Jose Luis and Sluyter, F and Schalkwyk, Leonard C (2006) 'The effects of a selective serotonin reuptake inhibitor and a tricyclic antidepressant on the behaviour of chronically stressed 129SvemJ and C57BL/6J mice in the hole board and forced swim test.' European Neuropsychopharmacology, 16. S258-S258. ISSN 0924-977X

Binder, Elke and Malki, Karim and Paya-Cano, Jose L and Fernandes, Cathy and Aitchison, Katherine J and Mathe, Aleksander A and Sluyter, Frans and Schalkwyk, Leonard C (2011) 'Antidepressants and the resilience to early-life stress in inbred mouse strains.' Pharmacogenetics and Genomics, 21 (12). pp. 779-789. ISSN 1744-6872

Blair, Jessica M A and Bavro, Vassiliy N and Ricci, Vito and Modi, Niraj and Cacciotto, Pierpaolo and Kleinekathӧfer, Ulrich and Ruggerone, Paolo and Vargiu, Attilio V and Baylay, Alison J and Smith, Helen E and Brandon, Yvonne and Galloway, David and Piddock, Laura J V (2015) 'AcrB drug-binding pocket substitution confers clinically relevant resistance and altered substrate specificity.' Proceedings of the National Academy of Sciences, 112 (11). pp. 3511-3516. ISSN 0027-8424

Boks, Marco P and Mierlo, Hans C van and Rutten, Bart P F and Radstake, Timothy . D J and De Witte, Lot and Geuze, Elbert and Horvath, Steve and Schalkwyk, Leonard C and Vinkers, Christiaan H and Broen, Jasper . A and Vermetten, Eric (2015) 'Longitudinal changes of telomere length and epigenetic age related to traumatic stress and post-traumatic stress disorder.' Psychoneuroendocrinology, 51. pp. 506-512. ISSN 0306-4530

Butcher, Lee M and Meaburn, Emma L and Craig, Ian W and Schalkwyk, Leonard C and Plomin, Robert (2006) 'A genomewide association scan for GE interplay in childhood.' American Journal of Medical Genetics Part B-Neuropsychiatric Genetics, 141B (7). O202. ISSN 1552-4841

Butcher, Lee M and Meaburn, Emma L and Dale, P S and Sham, Pak C and Schalkwyk, Leonard C and Plomin, Robert (2004) 'Association analysis of mild mental impairment using DNA pooling to screen 432 brain-expressed single nucleotide polymorphisms.' American Journal of Medical Genetics Part B-Neuropsychiatric Genetics, 130B (1). p. 58. ISSN 1552-4841

Butcher, Lee M and Meaburn, Emma L and Dale, Philip S and Sham, P and Schalkwyk, Leonard C and Craig, Ian W and Plomin, Robert (2005) 'Association analysis of mild mental impairment using DNA pooling to screen 432 brain-expressed single-nucleotide polymorphisms.' Molecular Psychiatry, 10 (4). pp. 384-392. ISSN 1359-4184

Butcher, Lee M and Meaburn, Emma L and Knight, J and Sham, P C and Schalkwyk, Leonard C and Craig, Ian W and Plomin, Robert (2005) 'Allelotyping over 10,000 SNPs using DNA pools and microarrays nominates four SNPs associated with mild mental impairment.' American Journal of Medical Genetics Part B-Neuropsychiatric Genetics, 138B (1). p. 19. ISSN 1552-4841

Butcher, Lee M and Meaburn, Emma L and Knight, J and Sham, P C and Schalkwyk, Leonard C and Craig, Ian W and Plomin, Robert (2005) 'SNPs, microarrays and pooled DNA: identification of four loci associated with mild mental impairment in a sample of 6000 children.' Human Molecular Genetics, 14 (10). pp. 1315-1325. ISSN 0964-6906

Butcher, Lee M and Meaburn, Emma L and Knight, J and Sham, P C and Schalkwyk, Leonard C and Craig, Ian W and Plomin, Robert (2005) 'SNPs, microarrays, and pooled DNA: Identification of four loci associated with mild mental impairment in a sample of 6000 children.' Behavior Genetics, 35 (6). p. 795. ISSN 0001-8244

C

Caspi, Avshalom and Williams, Benjamin and Kim-Cohen, Julia and Craig, Ian W and Milne, Barry J and Poulton, Richie and Schalkwyk, Leonard C and Taylor, Alan and Werts, Helen and Moffitt, Terrie E (2007) 'Moderation of breastfeeding effects on the IQ by genetic variation in fatty acid metabolism.' Proceedings Of The National Academy Of Sciences Of The United States Of America, 104 (47). pp. 18860-18865. ISSN 0027-8424

Catoni, Marco and Griffiths, Jayne and Becker, Claude and Zabet, Nicolae Radu and Bayon, Carlos and Dapp, Melanie and Lieberman-Lazarovich, Michal and Weigel, Detlef and Paszkowski, Jerzy (2017) 'DNA sequence properties that predict susceptibility to epiallelic switching.' The EMBO journal. ISSN 1460-2075

Chen, Dijun and Fu, Liang-Yu and Zhang, Zhao and Li, G.uoliang and Zhang, Hang and Jiang, Li and Harrison, Andrew P and Shanahan, Hugh P and Klukas, Christian and Zhang, Hong-Yu and Ruan, Yijun and Chen, Ling-Ling and Chen, Ming (2014) 'Dissecting the chromatin interactome of microRNA genes.' Nucleic Acids Research, 42 (5). pp. 3028-3043. ISSN 0305-1048

Chu, Dominique and Zabet, Nicolae Radu and Mitavskiy, Boris (2009) 'Models of transcription factor binding: Sensitivity of activation functions to model assumptions.' Journal of Theoretical Biology, 257 (3). pp. 419-429. ISSN 0022-5193

Chu, Dominique F and Zabet, Nicolae Radu and Hone, Andrew N W (2011) 'Optimal Parameter Settings for Information Processing in Gene Regulatory Networks.' Biosystems, 104 (2-3). pp. 99-108. ISSN 0303-2647

Churchill, Gary and Airey, David C and Allayee, Hooman and Angel, Joe M and Attie, Alan D and Beatty, Jackson and Beavis, William D and Belknap, John K and Bennett, Beth and Berrettini, Wade and Bleich, Andre and Bogue, Molly and Broman, Karl W and Buck, Kari J and Buckler, Ed and Burmeister, Margit and Chesler, Elissa J and Cheverud, James M and Clapcote, Steven and Cook, Melloni N and Cox, Roger D and Crabbe, John C and Crusio, Wim E and Darvasi, Ariel and Deschnepper, Christian F and Doerge, R W and Farber, Charles R and Forejt, Jiri and Gaile, Daniel and Garlow, Steven J and Geiger, Hartmut and Gershenfeld, Howard and Gordon, Terry and Gu, Jing and Gu, Weikuan and De Haan, Gerald and Hayes, Nancy L and Heller, Craig and Himmelbauer, Heinz and Hitzemann, Robert and Hunter, Kent and Hsu, Hui-Chen and Iraqi, Fuad A and Ivandic, Boris and Jacob, Howard J and Jansen, Ritsert C and Jjepsen, Karl J and Johnson, Dabney K and Johnson, Thomas E and Kempermann, Gerd and Kendziorski, Christina and Kotb, Malak and Kooy, R Frank and Llamas, Bastien and Lammert, Frank and Lassalle, Jean-Michel and Lowenstein, Pedro R and Lu, Lu and Lusiss, Aldons and Manly, Kenneth F and Marcucio, Ralph and Matthews, Doug and Medrano, Juan F and Miller, Darla R and Mittleman, Guy and Mock, Beverly A and Mogil, Jeffrey S and Montagutelli, Xavier and Morahan, Grant and Morris, David G and Mott, Richard and Nadeau, Joseph H and Nagase, Hiroki and Nowakowski, Richard S and O'Hara, Bruce F and Osadchuk, Alexander V and Page, Grier P and Paigen, Beverly and Paigen, Kenneth and Palmer, Abraham A and Pan, Huei-Ju and Peltonen-Palotie, Leena and Peirce, Jeremy and Pomp, Daniel and Pravenec, Michal and Prows, Daniel R and Qi, Zhonghua and Reeves, Roger H and Roder, John and Rosen, Glenn D and Schadt, Eric E and Schalkwyk, Leonard C and Seltzer, Ze'ev and Shimomura, Kazuhiro and Shou, Siming and Sillanpaa, Mikko J and Siracusa, Linda D and Snoeck, Hans-Willem and Spearow, Jimmy L and Svenson, Karen and Tarantino, Lisa M and Threadgill, David and Toth, Linda A and Valdar, William and de Villena, Fernando Pardo-Manuel and Warden, Craig and Whatley, Steve and Williams, Robert W and Wiltshire, Tim and Yi, Nengjun and Zhang, Dabao and Zhang, Min and Zou, Fei (2004) 'The Collaborative Cross, a community resource for the genetic analysis of complex traits.' Nature Genetics, 36. pp. 1133-1137. ISSN 1061-4036

Clifton, Bryan D and Librado, Pablo and Yeh, Shu-Dan and Solares, Edwin and Real, Daphne and Jayasekera, Suvini and Zhang, Wanting and Shi, Mijuan and Park, Ronni and Magie, Robert and Ma, Hsiu-Chin and Xia, Xiao-Qin and Marco, Antonio and Rozas, Julio and Ranz, Jose M (2017) 'Rapid Functional And Sequence Differentiation of a Tandemly-Repeated Species-Specific Multigene Family in Drosophila.' Molecular Biology and Evolution, 34 (1). pp. 51-65. ISSN 0737-4038

Condliffe, Daniel and Wong, Andrew and Troakes, Claire and Proitsi, Petroula and Patel, Yogen and Chouliaras, Leonidas and Fernandes, Cathy and Cooper, Jonathan and Lovestone, Simon and Schalkwyk, Leonard C and Mill, Jonathan and Lunnon, Katie (2014) 'Cross-region reduction in 5-hydroxymethylcytosine in Alzheimer's disease brain.' Neurobiology of Aging, 35 (8). pp. 1850-1854. ISSN 0197-4580

Corpas, Manuel and Valdivia-Granda, Willy and Torres, Nazareth and Greshake, Bastian and Coletta, Alain and Knaus, Alexej and Harrison, Andrew P and Cariaso, Mike and Moran, Federico and Nielsen, Fiona and Swan, Daniel and Weiss Solís, David Y and Krawitz, Peter and Schacherer, Frank and Schols, Peter and Yang, Huangming and Borry, Pascal and Glusman, Gustavo and Robinson, Peter N (2015) 'Crowdsourced direct-to-consumer genomic analysis of a family quartet.' BMC Genomics, 16 (1). ISSN 1471-2164

Craig, Ian W and Mill, Jonathan and Craig, Gavin M and Loat, Caroline and Schalkwyk, Leonard C (2004) 'Application of microarrays to the analysis of the inactivation status of human X-linked genes expressed in lymphocytes.' European Journal of Human Genetics, 12 (8). pp. 639-646. ISSN 1018-4813

D

D'Souza, U and Sugden, K and Aitchison, K J and Schalkwyk, Leonard C and McGuffin, R and Pariante, M (2006) 'Depression: the GENDEP study.' European Neuropsychopharmacology, 16. S187-S187. ISSN 0924-977X

D'Souza, U M and Sugden, K and Pariante, C M and Byers, H and Ward, M and Schalkwyk, Leonard C and McGuffin, P and Aitchison, K J (2006) 'Effects of antidepressant treatment on gene expression in mouse cultured cells.' American Journal of Medical Genetics Part B-Neuropsychiatric Genetics, 141B (7). O195. ISSN 1552-4841

Davies, Matthew N and Meaburn, Emma L and Schalkwyk, Leonard C (2010) 'Gene set enrichment; a problem of pathways.' Briefings in functional genomics & proteomics, 9. pp. 385-390. ISSN 1477-4062

Davies, Matthew N and Volta, Manuela and Pidsley, Ruth and Lunnon, Katie and Dixit, Abhishek and Lovestone, Simon and Coarfa, Cristian and Harris, R Alan and Milosavljevic, Aleksandar and Troakes, Claire and Al-Sarraj, Safa and Dobson, Richard and Schalkwyk, Leonard C and Mill, Jonathan (2012) 'Functional annotation of the human brain methylome identifies tissue-specific epigenetic variation across brain and blood.' Genome Biology, 13 (6). R43. ISSN 1465-6906

Davis, Oliver S P and Band, Gavin and Pirinen, Matti and Haworth, Claire M A and Meaburn, Emma L and Kovas, Yulia and Harlaar, Nicole and Docherty, Sophia J and Hanscombe, Ken B and Trzaskowski, Maciej and Curtis, Charles J C and Strange, Amy and Freeman, Colin and Bellenguez, Céline and Su, Zhan and Pearson, Richard and Vukcevic, Damjan and Langford, Cordelia and Deloukas, Panos and Hunt, Sarah and Gray, Emma and Dronov, Serge and Potter, Simon C and Tashakkori-Ghanbaria, Avazeh and Edkins, Sarah and Bumpstead, Suzannah J and Blackwell, Jenefer M and Bramon, Elvira and Brown, Matthew A and Casas, Juan P and Corvin, Aiden and Duncanson, Audrey and Jankowski, Janusz A Z and Markus, Hugh S and Mathew, Christopher G and Palmer, Colin N A and Rautanen, Anna and Sawcer, Stephen J and Trembath, Richard C and Viswanathan, Ananth C and Wood, Nicholas W and Barroso, Ines and Peltonen, Leena and Dale, Philip S and Petrill, Stephen A and Schalkwyk, Leonard C and Craig, Ian W and Lewis, Cathryn M and Price, Thomas S and Donnelly, Peter and Plomin, Robert and Spencer, Chris C A (2014) 'The correlation between reading and mathematics ability at age twelve has a substantial genetic component.' Nature Communications, 5. p. 4204. ISSN 2041-1723

Davis, Oliver S P and Butcher, Lee M and Docherty, Sophia J and Meaburn, Emma L and Curtis, Charles J C and Simpson, Michael A and Schalkwyk, Leonard C and Plomin, Robert (2010) 'A Three-Stage Genome-Wide Association Study of General Cognitive Ability: Hunting the Small Effects.' Behavior Genetics, 40. pp. 759-767. ISSN 0001-8244

Davis, Oliver S P and Plomin, Robert and Schalkwyk, Leonard C (2009) 'The SNPMaP package for R: a framework for genome-wide association using DNA pooling on microarrays.' Bioinformatics, 25 (2). pp. 281-283. ISSN 1367-4803

De Jager, Philip L and Srivastava, Gyan and Lunnon, Katie and Burgess, Jeremy and Schalkwyk, Leonard C and Yu, Lei and Eaton, Matthew L and Keenan, Brendan T and Ernst, Jason and McCabe, Cristin and Tang, Anna and Raj, Towfique and Replogle, Joseph and Brodeur, Wendy and Gabriel, Stacey and Chai, High S and Younkin, Curtis and Younkin, Steven G and Zou, Fanggeng and Szyf, Moshe and Epstein, Charles B and Schneider, Julie A and Bernstein, Bradley E and Meissner, Alex and Ertekin-Taner, Nilufer and Chibnik, Lori B and Kellis, Manolis and Mill, Jonathan and Bennett, David A (2014) 'Alzheimer's disease: early alterations in brain DNA methylation at ANK1, BIN1, RHBDF2 and other loci.' Nature Neuroscience, 17 (9). pp. 1156-1163. ISSN 1097-6256

Dempster, Emma L and Pidsley, Ruth and Schalkwyk, Leonard C and Owens, Sheena and Georgiades, Anna and Kane, Fergus and Kalidindi, Sridevi and Picchioni, Marco and Kravariti, Eugenia and Toulopoulou, Timothea and Murray, Robin M and Mill, Jonathan (2011) 'Disease-associated epigenetic changes in monozygotic twins discordant for schizophrenia and bipolar disorder.' Human Molecular Genetics, 20 (24). pp. 4786-4796. ISSN 0964-6906

Docherty, Sophia J and Butcher, Lee M and Schalkwyk, Leonard C and Plomin, Robert (2007) 'Applicability of DNA pools on 500 KSNP microarrays for cost-effective initial screens in genomewide association studies.' BMC Genomics, 8. p. 214. ISSN 1471-2164

Docherty, Sophia J and Davis, Oliver S P and Kovas, Yulia and Meaburn, Emma L and Dale, Philip S and Petrill, Stephen A and Schalkwyk, Leonard C and Plomin, Robert (2010) 'A genome-wide association study identifies multiple loci associated with mathematics ability and disability.' Genes, Brain and Behavior. pp. 234-247. ISSN 1601-1848

Don, Nicola (2015) A single molecule approach to investigate how AP1 transcriptional regulators find their target sites on DNA. PhD thesis, University of Essex.

de Lima Alves, Flávia and Stevenson, Andrew and Baxter, Esther and Gillion, Jenny L M and Hejazi, Fakhrossadat and Hayes, Sandra and Morrison, Ian E G and Prior, Bernard A and McGenity, Terry J and Rangel, Drauzio E N and Magan, Naresh and Timmis, Kenneth N and Hallsworth, John E (2015) 'Concomitant osmotic and chaotropicity-induced stresses in Aspergillus wentii: compatible solutes determine the biotic window.' Current Genetics, 61 (3). pp. 457-477. ISSN 0172-8083

E

Einsiedel, Edna and Allansdottir, Agnes and Allum, Nick and Bauer, Martin W and Berthomier, Anne and Chatjouli, Aigli and de Cheveigné, Suzanne and Downey, Robin and Gutteling, Jan M and Kohring, Mattias and Leonarz, Martina and Manzoli, Federica and Olofsson, Anna and Przestalski, Andrzej and Rusanen, Timo (2002) 'Brave new sheep the clone named Dolly.' In: Bauer, M W and Gaskell, George, (eds.) Biotechnology: the making of a global controversy. Cambridge University Press, Cambridge, UK, pp. 313-348. ISBN 9780521774390

El Khoury, Louis and Ribbans, William J and Raleigh, Stuart M (2016) 'MMP3 and TIMP2 gene variants as predisposing factors for Achilles tendon pathologies: Attempted replication study in a British case-control cohort.' Meta Gene. ISSN 2214-5400

Erezyilmaz, Deniz F and Hayward, Alex and Huang, Yan and Paps, Jordi and Acs, Zoltan and Delgado, Juan A and Collantes, Francisco and Kathirithamby, Jeyaraney (2014) 'Expression of the Pupal Determinant broad during Metamorphic and Neotenic Development of the Strepsipteran Xenos vesparum Rossi.' PloS One, 9 (4). e93614. ISSN 1932-6203

Exposito-Rodriguez, Marino and Laissue, Philippe P and Littlejohn, George R and Smirnoff, Nicholas and Mullineaux, Philip M (2013) 'The use of HyPer to examine spatial and temporal changes in H2O2 in high light-exposed plants.' Methods in enzymology, 527. pp. 185-201. ISSN 0076-6879

Ezer, Daphne and Zabet, Nicolae Radu and Adryan, Boris (2014) 'Homotypic clusters of transcription factor binding sites: A model system for understanding the physical mechanics of gene expression.' Computational and Structural Biotechnology Journal, 10 (17). pp. 63-69. ISSN 2001-0370

Ezer, Daphne and Zabet, Nicolae Radu and Adryan, Boris (2014) 'Physical constraints determine the logic of bacterial promoter architectures.' Nucleic acids research, 42 (7). pp. 4196-4207. ISSN 1362-4962

F

Fei, Peiwen and Zekavati, Anna and Nasir, Asghar and Alcaraz, Amor and Aldrovandi, Maceler and Marsh, Phil and Norton, John D and Murphy, John J (2014) 'Post-Transcriptional Regulation of BCL2 mRNA by the RNA-Binding Protein ZFP36L1 in Malignant B Cells.' PloS One, 9 (7). e102625. ISSN 1932-6203

Ferguson, John N (2017) Natural variation of water use and water productivity in Arabidopsis thaliana. PhD thesis, University of Essex.

Fernandes, Cathy and Hoyle, E and Dempster, E and Schalkwyk, Leonard C and Collier, D A (2006) 'Performance deficit of alpha 7 nicotinic receptor knockout mice in a delayed matching-to-place task suggests a mild impairment of working/episodic-like memory.' Genes Brain and Behavior, 5 (6). pp. 433-440. ISSN 1601-1848

Fernandes, Cathy and Liu, Lin and Paya-Cano, Jose Luis and Gregorova, Soňa and Forejt, Jiri and Schalkwyk, Leonard C (2004) 'Behavioral characterization of wild derived male mice (Mus musculus musculus) of the PWD/Ph inbred strain: High exploration compared to C57BL/6J.' Behavior Genetics, 34 (6). pp. 621-630. ISSN 0001-8244

Fernandes, Cathy and Liu, Lin and Paya-Cano, Jose Luis and Whatley, S A and Schalkwyk, Leonard C (2004) 'Correlating behaviour with gene expression: Identifying genes for anxiety and cognition in the mouse.' Journal of Psychopharmacology, 18 (3). A74-A74. ISSN 0269-8811

Fernandes, Cathy and Paya-Cano, Jose Luis and Sluyter, Frans and D'Souza, Ursula M and Plomin, Robert and Schalkwyk, Leonard C (2004) 'Hippocampal gene expression profiling across eight mouse inbred strains: towards understanding the molecular basis for behaviour.' European Journal of Neuroscience, 19 (9). pp. 2576-2582. ISSN 0953-816X

G

Galsworthy, Michael J and Paya-Cano, Jose Luis and Liu, Lin and Monleon, Santiago and Gregoryan, Gregory and Fernandes, Cathy and Schalkwyk, Leonard C and Plomin, Robert (2005) 'Assessing reliability, heritability and general cognitive ability in a battery of cognitive tasks for laboratory mice.' Behavior Genetics, 35 (5). pp. 675-692. ISSN 0001-8244

Gaskell, George and Thompson, Paul and Allum, Nick (2002) 'Worlds apart? Public opinion in Europe and the USA.' In: Bauer, Markus and Gaskell, George, (eds.) Biotechnology - the Making of a Global Controversy. Cambridge University Press, Cambridge, UK, pp. 351-376. ISBN 9780521774390

González-Estévez, Cristina and Felix, Daniel A and Smith, Matthew D and Paps, Jordi and Morley, Simon J and James, Victoria and Sharp, Tyson V and Aboobaker, A Aziz (2012) 'SMG-1 and mTORC1 Act Antagonistically to Regulate Response to Injury and Growth in Planarians.' PLoS Genetics, 8 (3). e1002619. ISSN 1553-7404

Graff, Mario and Poli, Riccardo (2010) 'Practical performance models of algorithms in evolutionary program induction and other domains.' Artificial Intelligence in Medicine, 174 (15). pp. 1254-1276. ISSN 0933-3657

Gupta, Nikhil and Pradeepa, Madapura M and Bhat, U Anayat and Rao, MR Satyanarayana (2015) 'Mapping of Post-translational Modifications of Transition Proteins, TP1 and TP2, and Identification of Protein Arginine Methyltransferase 4 and Lysine Methyltransferase 7 as Methyltransferase for TP2.' Journal of Biological Chemistry, 290 (19). pp. 12101-12122. ISSN 0021-9258

H

Hannon, Eilis and Dempster, Emma and Viana, Joana and Burrage, Joe and Smith, Adam R and Macdonald, Ruby and St Clair, David and Mustard, Colette and Breen, Gerome and Therman, Sebastian and Kaprio, Jaakko and Toulopoulou, Timothea and Pol, Hilleke E Hulshoff and Bohlken, Marc M and Kahn, Rene S and Nenadic, Igor and Hultman, Christina M and Murray, Robin M and Collier, David A and Bass, Nick and Gurling, Hugh and McQuillin, Andrew and Schalkwyk, Leonard C and Mill, Jonathan (2016) 'An integrated genetic-epigenetic analysis of schizophrenia: evidence for co-localization of genetic associations and differential DNA methylation.' Genome Biology, 17 (1). ISSN 1474-760X

Hannon, Eilis and Lunnon, Katie and Schalkwyk, Leonard C and Mill, Jonathan (2015) 'Interindividual methylomic variation across blood, cortex, and cerebellum: implications for epigenetic studies of neurological and neuropsychiatric phenotypes.' Epigenetics, 10 (11). pp. 1024-1032. ISSN 1559-2294

Hannon, Eilis and Spiers, Helen and Viana, Joana and Pidsley, Ruth and Burrage, Joe and Murphy, Therese M and Troakes, Claire and Turecki, Gustavo and O'Donovan, Michael C and Schalkwyk, Leonard C and Bray, Nicholas J and Mill, Jonathan (2015) 'Methylation QTLs in the developing brain and their enrichment in schizophrenia risk loci.' Nature Neuroscience, 19. pp. 48-54. ISSN 1097-6256

Harrison, Andrew P and Rowsell, Joanna and Camargo, Renata da Silva and Langdon, William B and Stalteri, Maria and Upton, Graham J G and Arteaga-Salas, Jose M (2008) 'The use of Affymetrix GeneChips as a tool for studying alternative forms of RNA.' Biochemical Society Transactions, 36 (Part 3). pp. 511-513. ISSN 0300-5127

Harrison, Andrew P and Shanahan, Hugh (2014) 'An Overview of Gene Regulation.' In: Chen, Ming and Hofestädt, Ralf, (eds.) Approaches in Integrative Bioinformatics: Towards the Virtual Cell. Springer, pp. 21-69. ISBN 978-3-642-41280-6

Holland, Peter W H and Marlétaz, Ferdinand and Maeso, Ignacio and Dunwell, Thomas L and Paps, Jordi (2017) 'New genes from old: asymmetric divergence of gene duplicates and the evolution of development.' Philosophical Transactions of the Royal Society B: Biological Sciences, 372 (1713). ISSN 0962-8436

Huezo-Diaz, P and Williamson, R and Nash, M W and Sim, S C and Alhberg, S and Hoda, F and Rietschel, M and Schmal, C and Farmer, A and Schulze, T and Hauser, J and Henigsberg, N and Maier, W and Zobel, A and Larsen, E R and Mors, O and Mendelewicz, J and Marusic, A and Perez, J and Schalkwyk, Leonard C and McGuffin, P and Craig, I and Ingelman-Sundberg, M and Aitchison, K J (2006) 'CYP2D6 and CYP2C19 association data from GENDEP, a multicentre European study.' American Journal of Medical Genetics Part B-Neuropsychiatric Genetics, 141B (7). pp. 761-762. ISSN 1552-4841

I

Illingworth, Robert S and Moffat, Michael and Mann, Abigail R and Read, David and Hunter, Chris J and Pradeepa, Madapura M and Adams, Ian R and Bickmore, Wendy A (2015) 'The E3 ubiquitin ligase activity of RING1B is not essential for early mouse development.' Genes & Development, 29 (18). pp. 1897-1902. ISSN 1725-1736

Ilott, Nicholas E and Schneider, Tomasz and Mill, Jonathan and Schalkwyk, Leonard C and Brolese, Giovana and Bizarro, Lisiane and Stolerman, Ian P and Dempster, Emma and Asherson, Philip (2014) 'Long-term effects of gestational nicotine exposure and food-restriction on gene expression in the striatum of adolescent rats.' PloS One, 9 (2). e88896. ISSN 1932-6203

J

Janecka, Magdalena and Marzi, Sarah J and Parsons, Michael J and Liu, Lin and Paya-Cano, Jose L and Smith, Rebecca G and Fernandes, Cathy and Schalkwyk, Leonard C (2017) 'Genetic polymorphisms and their association with brain and behavioural measures in heterogeneous stock mice.' Scientific Reports, 7. p. 41204. ISSN 2045-2322

Janecka, Magdalena and Mill, Jonathan and Basson, M Albert and Goriely, Alain and Spiers, Helen and Reichenberg, Avraham and Schalkwyk, Leonard C and Fernandes, Cathy (2017) 'Advanced paternal age effects in neurodevelopmental disorders—review of potential underlying mechanisms.' Translational Psychiatry, 7. e1019. ISSN 2158-3188

Jeffries, Aaron R and Perfect, Leo W and Ledderose, Julia and Schalkwyk, Leonard C and Bray, Nicholas and Mill, Jonathan and Price, Jack (2012) 'Stochastic Choice of Allelic Expression in Human Neural Stem Cells.' Stem cells, 30 (9). pp. 1938-1947. ISSN 1549-4918

Jimenez-Guri, Eva and Paps, Jordi and Garcia-Fernandez, Jordi and Salo, Emili (2006) 'Hox and ParaHox genes in Nemertodermatida, a basal bilaterian clade.' International Journal of Developmental Biology, 50 (8). pp. 675-679. ISSN 0214-6282

K

Karasawa, M and Zwacka, Ralf M and Reuter, A and Fink, T and Hsieh, C L and Lichter, P and Francke, U and Weiher, H (1993) 'The human homolog of the glomerulosclerosis gene Mpv17: structure and genomic organization.' Human Molecular Genetics, 2 (11). pp. 1829-34. ISSN 0964-6906

Kas, Martien J H and Fernandes, Cathy and Schalkwyk, Leonard C and Collier, David A (2007) 'Genetics of behavioural domains across the neuropsychiatric spectrum; of mice and men.' Molecular Psychiatry, 12 (4). pp. 324-330. ISSN 1359-4184

Kas, Martien J H and Gelegen, Cigdem and Schalkwyk, Leonard C and Collier, David A (2009) 'Interspecies Comparisons of Functional Genetic Variations and Their Implications in Neuropsychiatry.' American Journal of Medical Genetics Part B-Neuropsychiatric Genetics, 150B (3). pp. 309-317. ISSN 1552-4841

Keers, Robert and Pedroso, Inti and Breen, Gerome and Aitchison, Katherine J and Nolan, Patrick M and Cichon, Sven and Nothen, Marcus M and Rietschel, Marcella and Schalkwyk, Leonard C and Fernandes, Cathy (2012) 'Reduced Anxiety and Depression-Like Behaviours in the Circadian Period Mutant Mouse Afterhours.' PloS One, 7 (6). e38263. ISSN 1932-6203

Kember, R L and Dempster, E L and Lee, T H A and Schalkwyk, Leonard C and Mill, Jonathan and Fernandes, Cathy (2012) 'Maternal separation is associated with strain-specific responses to stress and epigenetic alterations to Nr3c1, Avp, and Nr4a1 in mouse.' Brain and Behavior, 2 (4). pp. 455-467. ISSN 2162-3279

Kenny, Nathan J and Sin, Yung Wa and Hayward, Alexander and Paps, Jordi and Chu, Ka Hou and Hui, Jerome H L (2015) 'The phylogenetic utility and functional constraint of microRNA flanking sequences.' Proceedings of the Royal Society B: Biological Sciences, 282 (1803). ISSN 0962-8452

Kheniche, Abdelhak and Salhi, Abdellah and Harrison, Andrew P and Dowden, John M (2008) 'A Deterministic Algorithm for DNA Sequence Comparison.' In: Arabnia, Hamid R and Yang, Mary Qu and Yang, Jack Y, (eds.) International Conference on Bioinformatics & Computational Biology, BIOCOMP 2008. CSREA Press, Las Vegas Nevada, pp. 848-854. ISBN 1601320558

Kolthur-Seetharam, Ullas and Pradeepa, Madapura M and Gupta, Nikhil and Narayanaswamy, Rammohan and Rao, Manchanahalli R Satyanarayana (2009) 'Spatiotemporal organization of AT-and GC-rich DNA and their association with transition proteins TP1 and TP2 in rat condensing spermatids.' Journal of Histochemistry & Cytochemistry, 57 (10). pp. 951-962. ISSN 0022-1554

Kõks, Sulev and Fernandes, Cathy and Kurrikoff, Kaido and Vasar, Eero and Schalkwyk, Leonard C (2008) 'Gene expression profiling reveals upregulation of Tlr4 receptors in Cckb receptor deficient mice.' Behavioural Brain Research, 188 (1). pp. 62-70. ISSN 0166-4328

Kõks, Sulev and Overall, Rupert W and Ivask, Marilin and Soomets, Ursel and Guha, Mithoo and Vasar, Eero and Fernandes, Cathy and Schalkwyk, Leonard C (2013) 'Silencing of the WFS1 gene in HEK cells induces pathways related to neurodegeneration and mitochondrial damage.' Physiological Genomics, 45 (5). pp. 182-90. ISSN 1094-8341

Kõks, Sulev and Soomets, Ursel and Paya-Cano, Jose Luis and Fernandes, Cathy and Luuk, H and Plaas, Mario and Terasmaa, Anton and Tillmann, Vallo and Noormets, Klari and Vasar, Eero and Schalkwyk, Leonard C (2009) 'Wfs1 gene deletion causes growth retardation in mice and interferes with the growth hormone pathway.' Physiological Genomics, 37 (3). pp. 249-259. ISSN 1094-8341

Kõks, Sulev and Soomets, Ursel and Plaas, Mario and Terasmaa, Anton and Noormets, Klari and Tillmann, Vallo and Vasar, Eero and Fernandes, Cathy and Schalkwyk, Leonard C (2011) 'Hypothalamic gene expression profile indicates a reduction in G protein signaling in the Wfs1 mutant mice.' Physiological Genomics, 43 (24). pp. 1351-1358. ISSN 1094-8341

Kõks, Sulev and Velthut, A and Sarapik, A and Altmae, S and Reinmaa, E and Schalkwyk, Leonard C and Fernandes, Cathy and Lad, H V and Soomets, Ursel and Jaakma, U and Salumets, A (2010) 'The differential transcriptome and ontology profiles of floating and cumulus granulosa cells in stimulated human antral follicles.' Molecular Human Reproduction, 16 (4). pp. 229-240. ISSN 1360-9947

L

Labrum, R W and Rajakulendran, S and Graves, T D and Eunson, Louise H and Bevan, R and Sweeney, M G and Hammans, S R and Tubridy, N and Britton, T and Carr, L J and Ostergaard, J R and Kennedy, C R and Al-Memar, A and Kullmann, D M and Schorge, S and Temple, K and Davis, M B and Hanna, M G (2009) 'Large scale calcium channel gene rearrangements in episodic ataxia and hemiplegic migraine: implications for diagnostic testing.' Journal of Medical Genetics, 46 (11). pp. 786-791. ISSN 0022-2593

Lad, Heena V and Liu, Lin and Paya-Cano, Jose Luis and Fernandes, Cathy and Schalkwyk, Leonard C (2007) 'Quantitative traits for the tail suspension test: automation, optimization, and BXD RI mapping.' Mammalian Genome, 18 (6-7). pp. 482-491. ISSN 0938-8990

Lad, Heena Vanmalibhai and Liu, Lin and Paya-Cano, Jose Luis and Parsons, Michael J and Kember, Rachel and Fernandes, Cathy and Schalkwyk, Leonard C (2010) 'Behavioural battery testing: Evaluation and behavioural outcomes in 8 inbred mouse strains.' Physiology & Behavior, 99 (3). pp. 301-316. ISSN 0031-9384

Langdon, William B and Harrison, Andrew P (2009) 'Evolving DNA motifs to predict GeneChip probe performance.' Algorithms For Molecular Biology, 4. ISSN 1748-7188

Langdon, William B and Harrison, Andrew P (2008) 'Evolving Regular Expressions for GeneChip Probe Performance Prediction.' In: Rudolph, G and Jansen, T and Lucas, S and Poloni, C and Beume, N, (eds.) Parallel Problem Solving From Nature - PPSN X, Proceedings. Lecture Notes in Computer Science (5199). Springer-Verlag, Berlin, pp. 1061-1070. ISBN 978-3-540-87699-1

Langdon, William B and Upton, Graham J G and Camargo, Renata da Silva and Harrison, Andrew P (2010) 'A Survey of Spatial Defects in Homo Sapiens Affymetrix GeneChips.' IEEE-ACM Transactions on Computational Biology and Bioinformatics, 7 (4). pp. 647-653. ISSN 1545-5963

Langdon, William B and Upton, Graham J G and Harrison, Andrew P (2009) 'Probes containing runs of guanines provide insights into the biophysics and bioinformatics of Affymetrix GeneChips.' Briefings in Bioinformatics, 10 (3). pp. 259-277. ISSN 1467-5463

Lill, Margit and Kõks, Sulev and Soomets, Ursel and Schalkwyk, Leonard C and Fernandes, Cathy and Lutsar, Irja and Taba, Pille (2013) 'Peripheral blood RNA gene expression profiling in patients with bacterial meningitis.' Frontiers in Neuroscience, 7. p. 33. ISSN 1662-4548

Liu, Lin and Fernandes, Cathy and Brookes, K and Paya-Cano, Jose Luis and Asherson, Philip and Schalkwyk, Leonard C (2005) 'Selecting over-active extremes in outbred heterogeneous stock (HS) mice for gene expression profiling: nominating novel candidate genes for over-activity.' European Neuropsychopharmacology, 15 (S1). S36-S37. ISSN 0924-977X

Ludeman, Danielle A and Farrar, Nathan and Riesgo, Ana and Paps, Jordi and Leys, Sally P (2014) 'Evolutionary origins of sensation in metazoans: functional evidence for a new sensory organ in sponges.' BMC Evolutionary Biology, 14 (3). ISSN 1471-2148

Lunnon, Katie and Hannon, Eilis and Smith, Rebecca G and Dempster, Emma and Wong, Chloe and Burrage, Joe and Troakes, Claire and Al-Sarraj, Safa and Kepa, Agnieszka and Schalkwyk, Leonard C and Mill, Jonathan (2016) 'Variation in 5-hydroxymethylcytosine across human cortex and cerebellum.' Genome Biology, 17 (1). ISSN 1474-760X

Lunnon, Katie and Keohane, Aoife and Pidsley, Ruth and Newhouse, Stephen and Riddoch-Contreras, Joanna and Thubron, Elisabeth B and Devall, Matthew and Soininen, Hikka and Kłoszewska, Iwona and Mecocci, Patrizia and Tsolaki, Magda and Vellas, Bruno and Schalkwyk, Leonard C and Dobson, Richard and Malik, Afshan N and Powell, John and Lovestone, Simon and Hodges, Angela (2017) 'Mitochondrial genes are altered in blood early in Alzheimer's disease.' Neurobiology of Aging. ISSN 0197-4580

Lunnon, Katie and Smith, Rebecca and Hannon, Eilis and De Jager, Philip L and Srivastava, Gyan and Volta, Manuela and Troakes, Claire and Al-Sarraj, Safa and Burrage, Joe and Macdonald, Ruby and Condliffe, Daniel and Harries, Lorna W and Katsel, Pavel and Haroutunian, Vahram and Kaminsky, Zachary and Joachim, Catharine and Powell, John and Lovestone, Simon and Bennett, David A and Schalkwyk, Leonard C and Mill, Jonathan (2014) 'Methylomic profiling implicates cortical deregulation of ANK1 in Alzheimer's disease.' Nature Neuroscience, 17 (9). pp. 1164-1170. ISSN 1097-6256

M

Mahmoud, Osama and Harrison, Andrew P and Gul, Asma and Khan, Zardad and Metodiev, Metodi and Lausen, Berthold (2016) 'Minimizing Redundancy Among Genes Selected Based on the Overlapping Overlapping Analysis.' In: Wilhelm, Adalbert F X and Kestler, Hans A, (eds.) Analysis of Large and Complex Data. Studies in Classification, Data Analysis, and Knowledge Organization . Springer, pp. 275-285. ISBN 978-3-319-25224-7

Mahmoud, Osama and Harrison, Andrew P and Perperoglou, Aris and Gul, Asma and Khan, Zardad and Metodiev, Metodi and Lausen, Berthold (2014) 'A feature selection method for classification within functional genomics experiments based on the proportional overlapping score.' BMC Bioinformatics, 15 (1). p. 274. ISSN 1471-2105

Malki, Karim and Campbell, James and Davies, Matthew and Keers, Robert and Uher, Rudolf and Ward, Malcolm and Paya-Cano, Jose and Aitchinson, Katherine J and Binder, Elke and Sluyter, Frans and Kuhn, Karsten and Selzer, Stefan and Craig, Ian and McGuffin, Peter and Schalkwyk, Leonard C (2012) 'Pharmacoproteomic investigation into antidepressant response in two mouse inbred strains.' Proteomics Clinical Applications, 12. pp. 2355-2365. ISSN 1862-8346

Malki, Karim and Du Rietz, Ebba and Crusio, Wim and Pain, Oliver and Paya-Cano, Jose and Karadaghi, Rezhaw L and Sluyter, Frans and de Boer, Sietse F and Sandnabba, Kenneth and Schalkwyk, Leonard C and Asherson, Philip and Tosto, Maria Grazia (2016) 'Transcriptome analysis of genes and gene networks involved in aggressive behavior in mouse and zebrafish.' American Journal of Medical Genetics Part B-Neuropsychiatric Genetics, 171 (6). pp. 827-838. ISSN 1552-4841

Malki, Karim and Keers, Robert and Tosto, Maria Grazia and Lourdusamy, Anbarasu and Carboni, Lucia and Domenici, Enrico and Uher, Rudolf and McGuffin, Peter and Schalkwyk, Leonard C (2014) 'The endogenous and reactive depression subtypes revisited: integrative animal and human studies implicate multiple distinct molecular mechanisms underlying major depressive disorder.' BMC Medicine, 12. p. 73. ISSN 1741-7015

Malki, Karim and Lourdusamy, Anbarasu and Binder, Elke and Paya-Cano, Jose and Sluyter, Frans and Craig, Ian and Keers, Robert and McGuffin, Peter and Uher, Rudolf and Schalkwyk, Leonard C (2012) 'Antidepressant-dependent mRNA changes in mouse associated with hippocampal neurogenesis in a mouse model of depression.' Pharmacogenetics and Genomics, 22 (11). pp. 765-76. ISSN 1744-6872

Malki, Karim and Mineur, Yann S and Tosto, Maria Grazia and Campbell, James and Karia, Priya and Jumabhoy, Irfan and Sluyter, Frans and Crusio, Wim E and Schalkwyk, Leonard C (2015) 'Pervasive and opposing effects of Unpredictable Chronic Mild Stress (UCMS) on hippocampal gene expression in BALB/cJ and C57BL/6J mouse strains.' BMC Genomics, 16 (1). ISSN 1471-2164

Malki, Karim and Pain, Oliver and Du Rietz, Ebba and Tosto, Maria Grazia and Paya-Cano, Jose and Sandnabba, Kenneth N and de Boer, Sietse and Schalkwyk, Leonard C and Sluyter, Frans (2014) 'Genes and gene networks implicated in aggression related behaviour.' Neurogenetics, 15 (4). pp. 255-266. ISSN 1364-6745

Malki, Karim and Tosto, Maria G and Pain, Oliver and Sluyter, Frans and Mineur, Yann S and Crusio, Wim E and de Boer, Sietse and Sandnabba, Kenneth N and Kesserwani, Jad and Robinson, Edward and Schalkwyk, Leonard C and Asherson, Philip (2016) 'Comparative mRNA analysis of behavioral and genetic mouse models of aggression.' American Journal of Medical Genetics Part B-Neuropsychiatric Genetics, 171 (3). pp. 427-436. ISSN 1552-4841

Malki, Karim and Tosto, Maria Grazia and Jumabhoy, Irfan and Lourdusamy, Anbarasu and Sluyter, Frans and Craig, Ian and Uher, Rudolf and McGuffin, Peter and Schalkwyk, Leonard C (2013) 'Integrative mouse and human mRNA studies using WGCNA nominates novel candidate genes involved in the pathogenesis of major depressive disorder.' Pharmacogenomics, 14 (16). pp. 1979-1990. ISSN 1462-2416

Malki, Karim and Tosto, Maria Grazia and Mouriño-Talín, Héctor and Rodríguez-Lorenzo, Sabela and Pain, Oliver and Jumhaboy, Irfan and Liu, Tina and Parpas, Panos and Newman, Stuart and Malykh, Artem and Carboni, Lucia and Uher, Rudolf and McGuffin, Peter and Schalkwyk, Leonard C and Bryson, Kevin and Herbster, Mark (2016) 'Highly polygenic architecture of antidepressant treatment response: Comparative analysis of SSRI and NRI treatment in an animal model of depression.' American Journal of Medical Genetics Part B-Neuropsychiatric Genetics. ISSN 1552-4841

Malki, Karim and Uher, Rudolf and Paya-Cano, Jose and Binder, Elke and Rietschel, Marcella and Zobel, Astrid and Mors, Ole and Hauser, Joanna and Henigsberg, Neven and Jerman, Borut and Souery, Daniel and Placentino, Anna and Ng, Mandy Y and Cohen-Woods, Sarah and Sluyter, Frans and Farmer, Anne and Aitchison, Katherine J and Craig, Ian and Lewis, Cathryn M and McGuffin, Peter and Schalkwyk, Leonard C (2011) 'Convergent Animal and Human Evidence Suggests a Role of PPM1A Gene in Response to Antidepressants.' Biological Psychiatry, 69. pp. 360-365. ISSN 0006-3223

Marco, Antonio (2015) 'Selection Against Maternal microRNA Target Sites in Maternal Transcripts.' G3, 5 (10). pp. 2199-2207. ISSN 2160-1836

Marco, Antonio (2014) 'Sex-biased expression of microRNAs in Drosophila melanogaster.' Open biology, 4. p. 140024. ISSN 2046-2441

Marlétaz, Ferdinand and Paps, Jordi and Maeso, Ignacio and Holland, Peter W H (2014) 'Discovery and classification of homeobox genes in animal genomes.' In: Graba, Yacine and Rezsohazy, René, (eds.) Hox Genes: Methods and Protocols. Methods in Molecular Biology (1196). Springer, pp. 3-18. ISBN 978-1-4939-1241-4

Martin, Charlotte and Tansey, Katherine E and Schalkwyk, Leonard C and Powell, Timothy R (2014) 'The inflammatory cytokines: molecular biomarkers for major depressive disorder?' Biomarkers in medicine. ISSN 1752-0371

Marzi, Sarah J and Meaburn, Emma L and Dempster, Emma L and Lunnon, Katie and Paya-Cano, Jose L and Smith, Rebecca G and Volta, Manuela and Troakes, Claire and Schalkwyk, Leonard C and Mill, Jonathan (2016) 'Tissue-specific patterns of allelically-skewed DNA methylation.' Epigenetics, 11 (1). pp. 24-35. ISSN 1559-2294

Meaburn, E and Butcher, L M and Harlaar, N and Curtis, C and Craig, Ian W and Schalkwyk, Leonard C and Plomin, Robert (2006) 'An association scan using pooled DNA and 100k SNPS identifies a 'SNP set' for early reading.' American Journal of Medical Genetics Part B-Neuropsychiatric Genetics, 141B (7). pp. 703-704. ISSN 1552-4841

Meaburn, Emma L and Butcher, Lee M and Knight, J and Craig, Ian W and Schalkwyk, Leonard C and Plomin, Robert (2005) 'QTLs for reading disability at 7 years: Genotyping pooled DNA on 100K SNP microarrays.' American Journal of Medical Genetics Part B-Neuropsychiatric Genetics, 138B (1). p. 51. ISSN 1552-4841

Meaburn, Emma L and Butcher, Lee M and Liu, Lin and Fernandes, Cathy and Hansen, Valerie and Al-Chalabi, Ammar and Plomin, Robert and Craig, Ian W and Schalkwyk, Leonard C (2005) 'Genotyping DNA pools on microarrays: Tackling the QTL problem of large samples and large numbers of SNPs.' BMC Genomics, 6. p. 52. ISSN 1471-2164

Meaburn, Emma L and Butcher, Lee M and Schalkwyk, Leonard C and Plomin, Robert (2006) 'Genotyping pooled DNA using 100K SNP microarrays: a step towards genomewide association scans.' Nucleic acids research, 34 (4). e28. ISSN 1362-4962

Meaburn, Emma L and Butcher, M L and Liu, Lin and Fernandes, Cathy and Sham, Pak C and Plomin, Robert and Craig, Ian W and Schalkwyk, Leonard C (2004) 'DNA pools on 10K genechips: Solving the QTL problem of large samples and large numbers of SNPS.' American Journal of Medical Genetics Part B-Neuropsychiatric Genetics, 130B (1). p. 29. ISSN 1552-4841

Meaburn, Emma L and Fernandes, Cathy and Craig, Ian W and Plomin, Robert and Schalkwyk, Leonard C (2009) 'Assessing Individual Differences in Genome-Wide Gene Expression in Human Whole Blood: Reliability Over Four Hours and Stability Over 10 Months.' Twin Research and Human Genetics, 12 (4). pp. 372-380. ISSN 1832-4274

Meaburn, Emma L and Harlaar, Nicole and Craig, Ian W and Schalkwyk, Leonard C and Plomin, Robert (2007) 'Genomewide gene expression profiles as a biological basis for non-shared environment: MZ twins discordant for reading ability.' Behavior Genetics, 37 (6). p. 776. ISSN 0001-8244

Meaburn, Emma L and Harlaar, Nicole and Craig, Ian W and Schalkwyk, Leonard C and Plomin, Robert (2008) 'Quantitative trait locus association scan of early reading disability and ability using pooled DNA and 100K SNP microarrays in a sample of 5760 children.' Molecular Psychiatry, 13 (7). pp. 729-740. ISSN 1359-4184

Meaburn, Emma L and Schalkwyk, Leonard C and Mill, Jonathan (2010) 'Allele-specific methylation in the human genome Implications for genetic studies of complex disease.' Epigenetics, 5 (7). pp. 578-582. ISSN 1559-2294

Memon, Farhat Naureen and Owen, Anne M and Sanchez-Graillet, Olivia and Upton, Graham J G and Harrison, Andrew P (2010) 'Identifying the impact of G-Quadruplexes on Affymetrix 3' Arrays using Cloud Computing.' Journal of Integrative Bioinformatics, 7(2) (111). ISSN 1613-4516

Memon, Farhat Naureen and Upton, Graham J G and Harrison, Andrew P (2010) 'A Comparative Study of the Impact of G-Stack Probes on Various Affymetrix GeneChips of Mammalia.' Journal of nucleic acids, 2010. ISSN 2090-021X

Munnoch, John T and Martinez, Ma Teresa Pellicer and Svistunenko, Dimitri A and Crack, Jason C and Le Brun, Nick E and Hutchings, Matthew I (2016) 'Characterization of a putative NsrR homologue in Streptomyces venezuelae reveals a new member of the Rrf2 superfamily.' Scientific Reports, 6. p. 31597. ISSN 2045-2322

N

Navarrete, Katherinne and Pedroso, Inti and De Jong, Simone and Stefansson, Hreinn and Steinberg, Staci and Stefansson, Kari and Ophoff, Roel A and Schalkwyk, Leonard C and Collier, David A (2013) 'TCF4 (e2-2; ITF2): a schizophrenia-associated gene with pleiotropic effects on human disease.' American Journal of Medical Genetics Part B-Neuropsychiatric Genetics, 162 (1). pp. 1-16. ISSN 1552-4841

Nyberg, J and Sandnabba, K and Schalkwyk, Leonard C and Sluyter, F (2004) 'Genetic and environmental (inter)actions in male mouse lines selected for aggressive and nonaggressive behavior.' Genes Brain and Behavior, 3 (2). pp. 101-109. ISSN 1601-1848

O

Okbay, Aysu and Baselmans, Bart M L and De Neve, Jan-Emmanuel and Turley, Patrick and Nivard, Michel G and Fontana, Mark Alan and Meddens, S Fleur W and Linnér, Richard Karlsson and Rietveld, Cornelius A and Derringer, Jaime and Gratten, Jacob and Lee, James J and Liu, Jimmy Z and de Vlaming, Ronald and Ahluwalia, Tarunveer S and Buchwald, Jadwiga and Cavadino, Alana and Frazier-Wood, Alexis C and Furlotte, Nicholas A and Garfield, Victoria and Geisel, Marie Henrike and Gonzalez, Juan R and Haitjema, Saskia and Karlsson, Robert and van der Laan, Sander W and Ladwig, Karl-Heinz and Lahti, Jari and van der Lee, Sven J and Lind, Penelope A and Liu, Tian and Matteson, Lindsay and Mihailov, Evelin and Miller, Michael B and Minica, Camelia C and Nolte, Ilja M and Mook-Kanamori, Dennis and van der Most, Peter J and Oldmeadow, Christopher and Qian, Yong and Raitakari, Olli and Rawal, Rajesh and Realo, Anu and Rueedi, Rico and Schmidt, Börge and Smith, Albert V and Stergiakouli, Evie and Tanaka, Toshiko and Taylor, Kent and Wedenoja, Juho and Wellmann, Juergen and Westra, Harm-Jan and Willems, Sara M and Zhao, Wei and Amin, Najaf and Bakshi, Andrew and Boyle, Patricia A and Cherney, Samantha and Cox, Simon R and Davies, Gail and Davis, Oliver S P and Ding, Jun and Direk, Nese and Eibich, Peter and Emeny, Rebecca T and Fatemifar, Ghazaleh and Faul, Jessica D and Ferrucci, Luigi and Forstner, Andreas and Gieger, Christian and Gupta, Richa and Harris, Tamara B and Harris, Juliette M and Holliday, Elizabeth G and Hottenga, Jouke-Jan and De Jager, Philip L and Kaakinen, Marika A and Kajantie, Eero and Karhunen, Ville and Kolcic, Ivana and Kumari, Meena and Launer, Lenore J and Franke, Lude and Li-Gao, Ruifang and Koini, Marisa and Loukola, Anu and Marques-Vidal, Pedro and Montgomery, Grant W and Mosing, Miriam A and Paternoster, Lavinia and Pattie, Alison and Petrovic, Katja E and Pulkki-Råback, Laura and Quaye, Lydia and Räikkönen, Katri and Rudan, Igor and Scott, Rodney J and Smith, Jennifer A and Sutin, Angelina R and Trzaskowski, Maciej and Vinkhuyzen, Anna E and Yu, Lei and Zabaneh, Delilah and Attia, John R and Bennett, David A and Berger, Klaus and Bertram, Lars and Boomsma, Dorret I and Snieder, Harold and Chang, Shun-Chiao and Cucca, Francesco and Deary, Ian J and van Duijn, Cornelia M and Eriksson, Johan G and Bültmann, Ute and de Geus, Eco J C and Groenen, Patrick J F and Gudnason, Vilmundur and Hansen, Torben and Hartman, Catharine A and Haworth, Claire M A and Hayward, Caroline and Heath, Andrew C and Hinds, David A and Hyppönen, Elina and Iacono, William G and Järvelin, Marjo-Riitta and Jöckel, Karl-Heinz and Kaprio, Jaakko and Kardia, Sharon L R and Keltikangas-Järvinen, Liisa and Kraft, Peter and Kubzansky, Laura D and Lehtimäki, Terho and Magnusson, Patrik K E and Martin, Nicholas G and McGue, Matt and Metspalu, Andres and Mills, Melinda and de Mutsert, Renée and Oldehinkel, Albertine J and Pasterkamp, Gerard and Pedersen, Nancy L and Plomin, Robert and Polasek, Ozren and Power, Christine and Rich, Stephen S and Rosendaal, Frits R and den Ruijter, Hester M and Schlessinger, David and Schmidt, Helena and Svento, Rauli and Schmidt, Reinhold and Alizadeh, Behrooz Z and Sørensen, Thorkild I A and Spector, Tim D and Steptoe, Andrew and Terracciano, Antonio and Thurik, A Roy and Timpson, Nicholas J and Tiemeier, Henning and Uitterlinden, André G and Vollenweider, Peter and Wagner, Gert G and Weir, David R and Yang, Jian and Conley, Dalton C and Smith, George Davey and Hofman, Albert and Johannesson, Magnus and Laibson, David I and Medland, Sarah E and Meyer, Michelle N and Pickrell, Joseph K and Esko, Tõnu and Krueger, Robert F and Beauchamp, Jonathan P and Koellinger, Philipp D and Benjamin, Daniel J and Bartels, Meike and Cesarini, David (2016) 'Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.' Nature Genetics, 48 (6). pp. 624-633. ISSN 1061-4036

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Paps, Jordi and Baguñà, Jaume and Riutort, Marta (2009) 'Bilaterian phylogeny: a broad sampling of 13 nuclear genes provides a new lophotrochozoa phylogeny and supports a paraphyletic basal acoelomorpha.' Molecular Biology and Evolution, 26 (10). pp. 2397-2406. ISSN 0737-4038

Paps, Jordi and Baguñà, Jaume and Riutort, Marta (2009) 'Lophotrochozoa internal phylogeny: new insights from an up-to-date analysis of nuclear ribosomal genes.' Proceedings of the Royal Society B: Biological Sciences, 276 (1660). pp. 1245-1254. ISSN 0962-8452

Paps, Jordi and Holland, Peter W H and Shimeld, Sebastian M (2012) 'A genome-wide view of transcription factor gene diversity in chordate evolution: less gene loss in amphioxus?' Briefings in Functional Genomics, 11 (2). pp. 177-186. ISSN 2041-2649

Paps, Jordi and Medina-Chacón, Luis and Marshall, Wyth and Suga, Hiroshi and Ruiz-Trillo, Iñaki (2013) 'Molecular Phylogeny of Unikonts: New Insights into the Position of Apusomonads and Ancyromonads and the Internal Relationships of Opisthokonts.' Protist, 164 (1). pp. 2-12. ISSN 1434-4610

Paps, Jordi and Riutort, Marta (2012) 'Molecular phylogeny of the phylum Gastrotricha: New data brings together molecules and morphology.' Molecular phylogenetics and evolution, 63 (1). pp. 208-212. ISSN 1095-9513

Paps, Jordi and Xu, Fei and Zhang, Guofan and Holland, Peter WH (2015) 'Reinforcing the egg-timer: Recruitment of novel Lophotrochozoa homeobox genes to early and late development in the Pacific oyster.' Genome Biology and Evolution, 7 (3). pp. 677-688. ISSN 1759-6653

Parsons, Michael J and Grimm, Christina and Paya-Cano, Jose and Fernandes, Cathy and Liu, Lin and Philip, Vivek M and Chesler, Elissa J and Nietfeld, Wilfried and Lehrach, Hans and Schalkwyk, Leonard C (2012) 'Genetic variation in hippocampal microRNA expression differences in C57BL/6 J X DBA/2 J (BXD) recombinant inbred mouse strains.' BMC Genomics, 13. p. 476. ISSN 1471-2164

Parsons, Michael J and Grimm, Christina H and Paya-Cano, Jose Luis and Sugden, Karen and Nietfeld, Wilfried and Lehrach, Hans and Schalkwyk, Leonard C (2008) 'Using hippocampal microRNA expression differences between mouse inbred strains to characterise miRNA function.' Mammalian Genome, 19 (7-8). pp. 552-560. ISSN 0938-8990

Paya-Cano, Jose Luis and Sluyter, F and Mineur, Y S and Fernandes, Cathy and Crusio, W E and Schalkwyk, Leonard C (2006) 'P.1.a.015 Strain differences in susceptibility to unpredictable chronic mild stress as assessed by hippocampal gene expression profiling.' European Neuropsychopharmacology, 16. S216-S217. ISSN 0924-977X

Pidsley, Ruth and Fernandes, Cathy and Viana, Joana and Paya-Cano, Jose L and Liu, Lin and Smith, Rebecca G and Schalkwyk, Leonard C and Mill, Jonathan (2012) 'DNA methylation at the Igf2/H19 imprinting control region is associated with cerebellum mass in outbred mice.' Molecular Brain, 5. p. 42. ISSN 1756-6606

Pidsley, Ruth and Wong, Chloe C Y and Volta, Manuela and Lunnon, Katie and Mill, Jonathan and Schalkwyk, Leonard C (2013) 'A data-driven approach to preprocessing Illumina 450K methylation array data.' BMC Genomics, 14. p. 293. ISSN 1471-2164

Porto, Tatiana V (2015) Structural and kinetic studies of a copper sensor protein in Streptomyces lividans. PhD thesis, University of Essex.

Powell, Timothy R and McGuffin, Peter and D'Souza, Ursula M and Cohen-Woods, Sarah and Hosang, Georgina M and Martin, Charlotte and Matthews, Keith and Day, Richard K and Farmer, Anne E and Tansey, Katherine E and Schalkwyk, Leonard C (2014) 'Putative transcriptomic biomarkers in the inflammatory cytokine pathway differentiate major depressive disorder patients from control subjects and bipolar disorder patients.' PloS One, 9 (3). e91076. ISSN 1932-6203

Powell, Timothy R and Powell-Smith, Georgia and Haddley, Kate and McGuffin, Peter and Quinn, John and Schalkwyk, Leonard C and Farmer, Anne E and D'Souza, Ursula M (2014) 'Mood-stabilizers differentially affect housekeeping gene expression in human cells.' International Journal of Methods in Psychiatric Research, 23 (2). pp. 279-288. ISSN 1049-8931

Powell, Timothy R and Schalkwyk, Leonard C and Heffernan, Andrew L and Breen, Gerome and Lawrence, Timothy and Price, Tom and Farmer, Anne E and Aitchison, Katherine J and Craig, Ian W and Danese, Andrea and Lewis, Catherine and McGuffin, Peter and Uher, Rudolf and Tansey, Katherine E and D'Souza, Ursula M (2013) 'Tumor Necrosis Factor and its targets in the inflammatory cytokine pathway are identified as putative transcriptomic biomarkers for escitalopram response.' European Neuropsychopharmacology, 23 (9). pp. 1105-1114. ISSN 0924-977X

Powell, Timothy R and Smith, R G and Hackinger, S and Schalkwyk, Leonard C and Uher, Rudolf and McGuffin, Peter and Mill, J and Tansey, Katherine E (2013) 'DNA methylation in interleukin-11 predicts clinical response to antidepressants in GENDEP.' Translational Psychiatry, 3. e300. ISSN 2158-3188

Powell, Timothy R and Tansey, Katherine E and Breen, Gerome and Farmer, Anne E and Craig, Ian W and Uher, Rudolf and McGuffin, Peter and D'Souza, Ursula M and Schalkwyk, Leonard C (2013) 'ATP-binding cassette sub-family F member 1 (ABCF1) is identified as a putative therapeutic target of escitalopram in the inflammatory cytokine pathway.' Journal of Psychopharmacology, 27 (7). pp. 609-15. ISSN 0269-8811

Pradeepa, Madapura M and Grimes, Graeme R and Kumar, Yatendra and Olley, Gabrielle and Taylor, Gillian C A and Schneider, Robert and Bickmore, Wendy A (2016) 'Histone H3 globular domain acetylation identifies a new class of enhancers.' Nature Genetics, 48 (6). pp. 681-686. ISSN 1061-4036

Pradeepa, Madapura M and Grimes, Graeme R and Taylor, Gillian CA and Sutherland, Heidi G and Bickmore, Wendy A (2014) 'Psip1/Ledgf p75 restrains Hox gene expression by recruiting both trithorax and polycomb group proteins.' Nucleic acids research, 42 (14). pp. 9021-9032. ISSN 1362-4962

Pradeepa, Madapura M and Manjunatha, S and Sathish, V and Agrawal, Shipra and Rao, M R S (2008) 'Involvement of importin-4 in the transport of transition protein 2 into the spermatid nucleus.' Molecular and cellular biology, 28 (13). pp. 4331-4341. ISSN 1098-5549

Pradeepa, Madapura M and McKenna, Fionnuala and Taylor, Gillian C A and Bengani, Hemant and Grimes, Graeme R and Wood, Andrew J and Bhatia, Shipra and Bickmore, Wendy A (2017) 'Psip1/p52 regulates posterior Hoxa genes through activation of lncRNA Hottip.' PLoS Genetics, 13 (4). e1006677. ISSN 1553-7404

Pradeepa, Madapura M and Nikhil, Gupta and Kishore, Annavarapu Hari and Bharath, Giriyapura N and Kundu, Tapas K and Rao, Manchanahalli R Satyanarayana (2009) 'Acetylation of transition protein 2 (TP2) by KAT3B (p300) alters its DNA condensation property and interaction with putative histone chaperone NPM3.' Journal of Biological Chemistry, 284 (43). pp. 29956-29967. ISSN 0021-9258

Pradeepa, Madapura M and Rao, M R S (2007) 'Chromatin remodeling during mammalian spermatogenesis: role of testis specific histone variants and transition proteins.' Society of Reproduction and Fertility supplement, 63. pp. 1-10.

Pradeepa, Madapura M and Sutherland, Heidi G and Ule, Jernej and Grimes, Graeme R and Bickmore, Wendy A (2012) 'Psip1/Ledgf p52 binds methylated histone H3K36 and splicing factors and contributes to the regulation of alternative splicing.' PLoS Genetics, 8 (5). e1002717. ISSN 1553-7404

Priestley, A and Beamish, H J and Gell, D and Amatucci, A G and Muhlmann-Diaz, M C and Singleton, B K and Smith, G C M and Blunt, T and Schalkwyk, Leonard C and Bedford, J S and Jackson, S P and Jeggo, P A and Taccioli, G E (1998) 'Molecular and biochemical characterisation of DNA-dependent protein kinase-defective rodent mutant irs-20.' Nucleic acids research, 26 (8). pp. 1965-1973. ISSN 1362-4962

Punapart, Marite and Eltermaa, Mall and Oflijan, Julia and Sütt, Silva and Must, Anne and Kõks, Sulev and Schalkwyk, Leonard C and Fernandes, Catherine and Vasar, Eero and Soomets, Ursel and Terasmaa, Anton (2014) 'Effect of chronic valproic Acid treatment on hepatic gene expression profile in wfs1 knockout mouse.' PPAR Research, 2014. p. 349525. ISSN 1687-4757

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Rahmioglu, Nilufer and Macgregor, Stuart and Drong, Alexander W and Hedman, Åsa K and Harris, Holly R and Randall, Joshua C and Prokopenko, Inga and Nyholt, Dale R and Morris, Andrew P and Montgomery, Grant W and Missmer, Stacey A and Lindgren, Cecilia M and Zondervan, Krina T and Kumari, Meena (2015) 'Genome-wide enrichment analysis between endometriosis and obesity-related traits reveals novel susceptibility loci.' Human Molecular Genetics, 24 (4). pp. 1185-1199. ISSN 0964-6906

Riutort, Marta and Paps, Jordi and Rúiz-Trillo, Iñaki (2014) 'Bilaterians: The Evolutionary Advantage of Being Two-Sided.' In: Vargas, Pablo and Zardoya, Rafael, (eds.) The Tree of Life. Sinauer Associates Inc. ISBN 978-1-60535-229-9

Ronald, Angelica and Butcher, Lee M and Docherty, Sophia and Davis, Oliver S P and Schalkwyk, Leonard C and Craig, Ian W and Plomin, Robert (2010) 'A Genome-Wide Association Study of Social and Non-Social Autistic-Like Traits in the General Population Using Pooled DNA, 500 K SNP Microarrays and Both Community and Diagnosed Autism Replication Samples.' Behavior Genetics, 40 (1). pp. 31-45. ISSN 0001-8244

Ronald, Angelica and Butcher, Lee M and Docherty, Sophia J and Davis, Oliver S P and Schalkwyk, Leonard C and Craig, Ian W and Plomin, Robert (2010) 'Response to comment by Stuart Macgregor.' Behavior Genetics, 40 (1). p. 48. ISSN 0001-8244

Rowsell, Joanna and Camargo, Renata da Silva and Langdon, William B and Stalteri, Maria A and Harrison, Andrew P (2010) 'Uncovering the expression patterns of chimeric transcripts using surveys of Affymetrix GeneChips.' Journal of Integrative Bioinformatics, 7(3) (137). ISSN 1613-4516

Ruiz-Trillo, Iñaki and Paps, Jordi and Loukota, Merce and Ribera, Carles and Jondelius, Ulf and Baguñà, Jaume (2002) 'A phylogenetic analysis of myosin heavy chain type II sequences corroborates that Acoela and Nemertodermatida are basal bilaterians.' Proceedings Of The National Academy Of Sciences, 99 (17). pp. 11246-11251. ISSN 0027-8424

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Salhi, Abdellah and Pattas, Evangelos (2010) 'An Evolutionary Approach to Linear Programming.' International Journal of Optimization: Theory, Methods and Applications, 2 (2). pp. 138-149. ISSN 2070-5565

Salhi, Abdellah and Rodríguez, José Antonio Vázquez and Zhang, Qingfu (2010) 'An estimation of distribution algorithm with guided mutation for a complex flow shop scheduling problem.' In: Lipson, Hod, (ed.) Proceedings of the 9th annual conference on Genetic and evolutionary computation - GECCO '07. ACM, pp. 570-576. ISBN 9781595936974

Sanchez-Graillet, Olivia and Stalteri, Maria A and Rowsell, Joanna and Upton, Graham J G and Harrison, Andrew P (2010) 'Using surveys of Affymetrix GeneChips to study antisense expression.' Journal of integrative bioinformatics, 7(2) (114). ISSN 1613-4516

Schalkwyk, Leonard C and Fernandes, Cathy and Nash, M W and Kurrikoff, Kaido and Vasar, Eero and Kõks, Sulev (2007) 'Interpretation of knockout experiments: the congenic footprint.' Genes, Brain and Behavior, 6 (3). pp. 299-303. ISSN 1601-1848

Schalkwyk, Leonard C and Meaburn, Emma L and Smith, Rebecca and Dempster, Emma L and Jeffries, Aaron R and Davies, Matthew N and Plomin, Robert and Mill, Jonathan (2010) 'Allelic Skewing of DNA Methylation Is Widespread across the Genome.' American Journal of Human Genetics, 86 (2). pp. 196-212. ISSN 0002-9297

Schoech, Armin P and Zabet, Nicolae Radu (2014) 'Facilitated diffusion buffers noise in gene expression.' Physical Review E, 90 (3). 032701. ISSN 1539-3755

Scotti, John S and Leung, Ivanhoe K H and Ge, Wei and Bentley, Michael A and Paps, Jordi and Kramer, Holger B and Lee, Joongoo and Aik, WeiShen and Choi, Hwanho and Paulsen, Steinar M and Bowman, Lesley A H and Loika, Nikita D and Horitaa, Shoichiro and Hoa, Chia-hua and Kershawa, Nadia J and Tang, Christoph M and Claridge, Timothy D W and Preston, Gail M and McDonough, Michael A and Schofield, Christopher J (2014) 'Human oxygen sensing may have origins in prokaryotic elongation factor Tu prolyl-hydroxylation.' Proceedings Of The National Academy Of Sciences Of The United States Of America, 111 (37). pp. 13331-13336. ISSN 0027-8424

Sikk, Katrin and Kõks, Sulev and Soomets, Ursel and Schalkwyk, Leonard C and Fernandes, Cathy and Haldre, Sulev and Aquilonius, Sten-Magnus and Taba, Pille (2011) 'Peripheral blood RNA expression profiling in illicit methcathinone users reveals effect on immune system.' Frontiers in Genetics, 2. ISSN 1664-8021

Simons, Michelle and Pollard, Mark R and Hughes, Craig D and Ward, Andrew D and Van Houten, Bennett and Towrie, Mike and Botchway, Stan W and Parker, Anthony W and Kad, Neil M (2015) 'Directly interrogating single quantum dot labelled UvrA2 molecules on DNA tightropes using an optically trapped nanoprobe.' Scientific Reports, 5. p. 18486. ISSN 2045-2322

Simpson, Claire L and Knight, Joanne and Butcher, Lee M and Hansen, Valerie K and Meaburn, Emma L and Schalkwyk, Leonard C and Craig, Ian W and Powell, John F and Sham, Pak C and Al-Chalabi, Ammar (2005) 'A central resource for accurate allele frequency estimation from pooled DNA genotyped on DNA microarrays.' Nucleic acids research, 33 (3). e25. ISSN 1362-4962

Smith, Adam and Smith, Rebecca G and Condliffe, Daniel and Hannon, Eilis and Schalkwyk, Leonard C and Mill, Jonathan and Lunnon, Katie (2016) 'Increased DNA methylation near TREM2 is consistently seen in the superior temporal gyrus in Alzheimer’s disease brain.' Neurobiology of Aging, 47. pp. 35-40. ISSN 0197-4580

Smith, Rebecca G and Fernandes, Cathy and Kember, Rachel and Schalkwyk, Leonard C and Buxbaum, Joseph and Reichenberg, Abraham and Mill, Jonathan (2014) 'Transcriptomic changes in the frontal cortex associated with paternal age.' Molecular Autism, 5 (1). p. 24. ISSN 2040-2392

Smith, Rebecca G and Kember, Rachel L and Mill, Jonathan and Fernandes, Cathy and Schalkwyk, Leonard C and Buxbaum, Joseph D and Reichenberg, Abraham (2009) 'Advancing Paternal Age Is Associated with Deficits in Social and Exploratory Behaviors in the Offspring: A Mouse Model.' PloS One, 4. ISSN 1932-6203

Smith, Rebecca G and Reichenberg, A and Kember, R L and Buxbaum, J D and Schalkwyk, Leonard C and Fernandes, Cathy and Mill, Jonathan (2012) 'Advanced paternal age is associated with altered DNA methylation at brain-expressed imprinted loci in inbred mice: implications for neuropsychiatric disease.' Molecular Psychiatry, 18. pp. 635-636. ISSN 1359-4184

Stalteri, Maria A and Harrison, Andrew P (2007) 'Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips.' BMC Bioinformatics, 8 (1). p. 13. ISSN 1471-2105

Stephens, Christopher R and Poli, Riccardo (2007) 'Coarse-Grained Dynamics for Generalized Recombination.' IEEE Transactions on Evolutionary Computation, 11 (4). pp. 541-557. ISSN 1089-778X

Stolerman, I P and Chamberlain, S and Bizarro, L and Fernandes, Cathy and Schalkwyk, Leonard C (2004) 'The role of nicotinic receptor alpha 7 subunits in nicotine discrimination.' Neuropharmacology, 46 (3). pp. 363-371. ISSN 0028-3908

Stracquadanio, Giovanni and Wang, Xuting and Wallace, Marsha D and Grawenda, Anna M and Zhang, Ping and Hewitt, Juliet and Zeron-Medina, Jorge and Castro-Giner, Francesc and Tomlinson, Ian P and Goding, Colin R and Cygan, Kamil J and Fairbrother, William G and Thomas, Laurent F and Sætrom, Pål and Gemignani, Federica and Landi, Stefano and Schuster-Böckler, Benjamin and Bell, Douglas A and Bond, Gareth L (2016) 'The importance of p53 pathway genetics in inherited and somatic cancer genomes.' Nature Reviews Cancer, 16 (4). pp. 251-265. ISSN 1474-175X

Sugden, K and D'Souza, U M and McGuffin, P and Schalkwyk, Leonard C and Aitchison, K J and Pariante, C M (2005) 'Gene expression analyses of a mouse fibroblast cell line after antidepressant treatment.' American Journal of Medical Genetics Part B-Neuropsychiatric Genetics, 138B (1). p. 147. ISSN 1552-4841

Sugden, K and D'Souzal, U M and Aitchison, K J and Schalkwyk, Leonard C and McGuffin, P and Byers, H and Campbell, J and Hye, A and Pariante, C M (2007) 'Gene expression analyses of mouse fibroblast cell line L929 after antidepressant treatment.' European Neuropsychopharmacology, 17. S27-S28. ISSN 0924-977X

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Talmud, Philippa J and Cooper, Jackie A and Morris, Richard W and Dudbridge, Frank and Shah, Tina and Engmann, Jorgen and Dale, Caroline and White, Jon and McLachlan, Stela and Zabaneh, Delilah and Wong, Andrew and Ong, Ken K and Gaunt, Tom and Holmes, Michael V and Lawlor, Debbie A and Richards, Marcus and Hardy, Rebecca and Kuh, Diana and Wareham, Nicholas and Langenberg, Claudia and Ben-Shlomo, Yoav and Wannamethee, S Goya and Strachan, Mark W J and Kumari, Meena and Whittaker, John C and Drenos, Fotios and Kivimaki, Mika and Hingorani, Aroon D and Price, Jacqueline F and Humphries, Steve E (2015) 'Sixty-five common genetic variants and prediction of type 2 diabetes.' Diabetes, 64 (5). pp. 1830-1840. ISSN 1939-327X

Tandon, K and Schalkwyk, Leonard C and Checkley, S and Patel, M and Kinirons, M and Kerwin, R W and McGuffin, P and Aitchison, K J (2002) 'CYP2D6 genotype and treatment with tricyclic antidepressants.' American Journal of Medical Genetics, 114 (7). P58. ISSN 1552-4825

Tandon, K and Schalkwyk, Leonard C and Patel, M and Kinirons, M and Kerwin, R W and McGuffin, P and Aitchison, K J (2002) 'An amino acid substitution (IIe109Val) in CYP2D6.' European Neuropsychopharmacology, 12 (S3). S405-S405. ISSN 0924-977X

Taylor, Gillian C A and Eskeland, Ragnhild and Hekimoglu-Balkan, Betül and Pradeepa, Madapura M and Bickmore, Wendy A (2013) 'H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction.' Genome Research, 23 (12). pp. 2053-2065. ISSN 1088-9051

Teif, Vladimir B and Cherstvy, Andrey G (2016) 'Chromatin and epigenetics: current biophysical views.' AIMS Biophysics, 3 (1). pp. 88-98. ISSN 2377-9098

Teif, Vladimir B and Mallm, Jan-Philipp and Sharma, Tanvi and Mark Welch, David B and Rippe, Karsten and Eils, Roland and Langowski, Jörg and Olins, Ada L and Olins, Donald E (2017) 'Nucleosome repositioning during differentiation of a human myeloid leukemia cell line.' Nucleus, 8 (2). pp. 188-204. ISSN 1949-1034

Torruella, Guifre and Derelle, Romain and Paps, Jordi and Lang, Franz B and Roger, Andrew J and Shalchian-Tabrizi, Kamran and Ruiz-Trillo, Iñaki (2012) 'Phylogenetic relationships within the Opisthokonta based on phylogenomic analyses of conserved single copy protein domains.' Molecular Biology and Evolution, 29 (2). pp. 531-544. ISSN 0737-4038

Toye, Ayo A and Schalkwyk, Leonard C and Lehrach, Hans and Bumstead, Nat (1997) 'A yeast artificial chromosome (YAC) library containing 10 haploid chicken genome equivalents.' Mammalian Genome, 8 (4). pp. 274-276. ISSN 0938-8990

Tsai, Isheng J and Zarowiecki, Magdalena and Holroyd, Nancy and Garciarrubio, Alejandro and Sanchez-Flores, Alejandro and Brooks, Karen L and Tracey, Alan and Bobes, Raúl J and Fragoso, Gladis and Sciutto, Edda and Aslett, Martin and Beasley, Helen and Bennett, Hayley M and Cai, Jianping and Camicia, Federico and Clark, Richard and Cucher, Marcela and De Silva, Nishadi and Day, Tim A and Deplazes, Peter and Estrada, Karel and Fernández, Cecilia and Holland, Peter W H and Hou, Junling and Hu, Songnian and Huckvale, Thomas and Hung, Stacy S and Kamenetzky, Laura and Keane, Jacqueline A and Kiss, Ferenc and Koziol, Uriel and Lambert, Olivia and Liu, Kan and Luo, Xuenong and Luo, Yingfeng and Macchiaroli, Natalia and Nichol, Sarah and Paps, Jordi and Parkinson, John and Pouchkina-Stantcheva, Natasha and Riddiford, Nick and Rosenzvit, Mara and Salinas, Gustavo and Wasmuth, James D and Zamanian, Mostafa and Zheng, Yadong and Garciarrubio, Alejandro and Bobes, Raúl J and Fragoso, Gladis and Sánchez-Flores, Alejandro and Estrada, Karel and Cevallos, Miguel A and Morett, Enrique and González, Víctor and Portillo, Tobias and Ochoa-Leyva, Adrian and José, Marco V and Sciutto, Edda and Landa, Abraham and Jiménez, Lucía and Valdés, Víctor and Carrero, Julio C and Larralde, Carlos and Morales-Montor, Jorge and Limón-Lason, Jorge and Soberón, Xavier and Laclette, Juan P and Cai, Xuepeng and Soberón, Xavier and Olson, Peter D and Laclette, Juan P and Brehm, Klaus and Berriman, Matthew (2013) 'The genomes of four tapeworm species reveal adaptations to parasitism.' Nature, 496 (7443). pp. 57-63. ISSN 0028-0836

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Upton, Graham J G and Harrison, Andrew P (2010) 'The detection of blur in affymetrix GeneChips.' Statistical applications in genetics and molecular biology, 9 (1). Article37. ISSN 1544-6115

Upton, Graham J G and Langdon, William B and Harrison, Andrew P (2008) 'G-spots cause incorrect expression measurement in Affymetrix microarrays.' BMC Genomics, 9 (1). p. 613. ISSN 1471-2164

Upton, Graham J G and Sanchez-Graillet, Olivia and Rowsell, Joanna and Arteaga-Salas, Jose M and Graham, Neil S and Stalteri, Maria A and Memon, Farhat Naureen and May, Sean T and Harrison, Andrew P (2009) 'On the causes of outliers in Affymetrix GeneChip data.' Briefings in functional genomics & proteomics, 8 (3). pp. 199-212. ISSN 1477-4062

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