Items where Subject is "Q Science > QH Natural history > QH426 Genetics"

A

A.Jones, Karen and M.Black, Donald and A.Brown, Melissa and L.Griffiths, Beatrice and M.Nicolai, Hans and A.Chambers, Julie and Bonjardim, Marisa and Xu, Chun-Fang and Boyd, Marie and MeFariane, Robert and Korn, Bernhard and Poustka, Annemarie and A.North, Michael and Schalkwyk, Leo and Lehrach, Hans and Solomon, Ellen (1994) The detailed characterisation of a 400 kb cosmid walk in the <i>BRCA1</i> region: identification and localisation of 10 genes including a dual-specificity phosphatase. Human Molecular Genetics, 3 (11). pp. 1927-1934. DOI https://doi.org/10.1093/hmg/3.11.1927

Abdel-Majid, Raja M and Leong, Wey L and Schalkwyk, Leonard C and Smallman, Donald S and Wong, Scott T and Storm, Daniel R and Fine, Alan and Dobson, Melanie J and Guernsey, Duane L and Neumann, Paul E (1998) Loss of adenylyl cyclase I activity disrupts patterning of mouse somatosensory cortex. Nature Genetics, 19 (3). pp. 289-291. DOI https://doi.org/10.1038/980

Abiola, O and Angel, JM and Avner, P and Bachmanov, AA and Belknap, JK and Bennett, B and Blankenhorn, EP and Blizard, DA and Bolivar, V and Brockmann, GA and Buck, KJ and Bureau, JF and Casley, WL and Chesler, EJ and Cheverud, JM and Churchill, GA and Cook, M and Crabbe, JC and Crusio, WE and Darvasi, A and de Haan, G and Demant, P and Doerge, RW and Elliott, RW and Farber, CR and Flaherty, L and Flint, J and Gershenfeld, H and Gibson, JP and Gu, J and Gu, W and Himmelbauer, H and Hitzemann, R and Hsu, HC and Hunter, K and Iraqi, FA and Jansen, RC and Johnson, TE and Jones, BC and Kempermann, G and Lammert, F and Lu, L and Manly, KF and Matthews, DB and Medrano, JF and Mehrabian, M and Mittleman, G and Mock, BA and Mogil, JS and Montagutelli, X and Morahan, G and Mountz, JD and Nagase, H and Nowakowski, RS and O'Hara, BF and Osadchuk, AV and Paigen, B and Palmer, AA and Peirce, JL and Pomp, D and Rosemann, M and Rosen, GD and Schalkwyk, LC and Seltzer, Z and Settle, S and Shimomura, K and Shou, S and Sikela, JM and Siracusa, LD and Spearow, JL and Teuscher, C and Threadgill, DW and Toth, LA and Toye, AA and Vadasz, C and Van Zant, G and Wakeland, E and Williams, RW and Zhang, HG and Zou, F (2003) The nature and identification of quantitative trait loci: a community's view. Nature Reviews Genetics, 4 (11). pp. 911-916. DOI https://doi.org/10.1038/nrg1206

Abuzaid, Amani Omar S (2017) Functional analysis of the CP12 gene family in Arabidopsis. PhD thesis, University of Essex.

Albhilal, Waleed Sulaiman (2015) The Arabidopsis thaliana Heat Shock Transcription Factor A1b Transcriptional Regulatory Network. PhD thesis, University of Essex.

Aljuaid, Bandar (2017) Identification and analysis of Arabidopsis thiamine pyrophosphate transporters. PhD thesis, University of Essex.

Andrayas, Alexandria (2017) Considering the impact of smoking on DNA methylation in Understanding Society. Masters thesis, University of Essex.

Arking, Dan E and Pulit, Sara L and Crotti, Lia and van der Harst, Pim and Munroe, Patricia B and Koopmann, Tamara T and Sotoodehnia, Nona and Rossin, Elizabeth J and Morley, Michael and Wang, Xinchen and Johnson, Andrew D and Lundby, Alicia and Gudbjartsson, Daníel F and Noseworthy, Peter A and Eijgelsheim, Mark and Bradford, Yuki and Tarasov, Kirill V and Dörr, Marcus and Müller-Nurasyid, Martina and Lahtinen, Annukka M and Nolte, Ilja M and Smith, Albert Vernon and Bis, Joshua C and Isaacs, Aaron and Newhouse, Stephen J and Evans, Daniel S and Post, Wendy S and Waggott, Daryl and Lyytikäinen, Leo-Pekka and Hicks, Andrew A and Eisele, Lewin and Ellinghaus, David and Hayward, Caroline and Navarro, Pau and Ulivi, Sheila and Tanaka, Toshiko and Tester, David J and Chatel, Stéphanie and Gustafsson, Stefan and Kumari, Meena and Morris, Richard W and Naluai, Åsa T and Padmanabhan, Sandosh and Kluttig, Alexander and Strohmer, Bernhard and Panayiotou, Andrie G and Torres, Maria and Knoflach, Michael and Hubacek, Jaroslav A and Slowikowski, Kamil and Raychaudhuri, Soumya and Kumar, Runjun D and Harris, Tamara B and Launer, Lenore J and Shuldiner, Alan R and Alonso, Alvaro and Bader, Joel S and Ehret, Georg and Huang, Hailiang and Kao, WH Linda and Strait, James B and Macfarlane, Peter W and Brown, Morris and Caulfield, Mark J and Samani, Nilesh J and Kronenberg, Florian and Willeit, Johann and Smith, J Gustav and Greiser, Karin H and Meyer zu Schwabedissen, Henriette and Werdan, Karl and Carella, Massimo and Zelante, Leopoldo and Heckbert, Susan R and Psaty, Bruce M and Rotter, Jerome I and Kolcic, Ivana and Polašek, Ozren and Wright, Alan F and Griffin, Maura and Daly, Mark J and Arnar, David O and Hólm, Hilma and Thorsteinsdottir, Unnur and Denny, Joshua C and Roden, Dan M and Zuvich, Rebecca L and Emilsson, Valur and Plump, Andrew S and Larson, Martin G and O'Donnell, Christopher J and Yin, Xiaoyan and Bobbo, Marco and D'Adamo, Adamo P and Iorio, Annamaria and Sinagra, Gianfranco and Carracedo, Angel and Cummings, Steven R and Nalls, Michael A and Jula, Antti and Kontula, Kimmo K and Marjamaa, Annukka and Oikarinen, Lasse and Perola, Markus and Porthan, Kimmo and Erbel, Raimund and Hoffmann, Per and Jöckel, Karl-Heinz and Kälsch, Hagen and Nöthen, Markus M and den Hoed, Marcel and Loos, Ruth JF and Thelle, Dag S and Gieger, Christian and Meitinger, Thomas and Perz, Siegfried and Peters, Annette and Prucha, Hanna and Sinner, Moritz F and Waldenberger, Melanie and de Boer, Rudolf A and Franke, Lude and van der Vleuten, Pieter A and Beckmann, Britt Maria and Martens, Eimo and Bardai, Abdennasser and Hofman, Nynke and Wilde, Arthur AM and Behr, Elijah R and Dalageorgou, Chrysoula and Giudicessi, John R and Medeiros-Domingo, Argelia and Barc, Julien and Kyndt, Florence and Probst, Vincent and Ghidoni, Alice and Insolia, Roberto and Hamilton, Robert M and Scherer, Stephen W and Brandimarto, Jeffrey and Margulies, Kenneth and Moravec, Christine E and Greco M, Fabiola del and Fuchsberger, Christian and O'Connell, Jeffrey R and Lee, Wai K and Watt, Graham CM and Campbell, Harry and Wild, Sarah H and El Mokhtari, Nour E and Frey, Norbert and Asselbergs, Folkert W and Leach, Irene Mateo and Navis, Gerjan and van den Berg, Maarten P and van Veldhuisen, Dirk J and Kellis, Manolis and Krijthe, Bouwe P and Franco, Oscar H and Hofman, Albert and Kors, Jan A and Uitterlinden, André G and Witteman, Jacqueline CM and Kedenko, Lyudmyla and Lamina, Claudia and Oostra, Ben A and Abecasis, Gonçalo R and Lakatta, Edward G and Mulas, Antonella and Orrú, Marco and Schlessinger, David and Uda, Manuela and Markus, Marcello RP and Völker, Uwe and Snieder, Harold and Spector, Timothy D and Ärnlöv, Johan and Lind, Lars and Sundström, Johan and Syvänen, Ann-Christine and Kivimaki, Mika and Kähönen, Mika and Mononen, Nina and Raitakari, Olli T and Viikari, Jorma S and Adamkova, Vera and Kiechl, Stefan and Brion, Maria and Nicolaides, Andrew N and Paulweber, Bernhard and Haerting, Johannes and Dominiczak, Anna F and Nyberg, Fredrik and Whincup, Peter H and Hingorani, Aroon D and Schott, Jean-Jacques and Bezzina, Connie R and Ingelsson, Erik and Ferrucci, Luigi and Gasparini, Paolo and Wilson, James F and Rudan, Igor and Franke, Andre and Mühleisen, Thomas W and Pramstaller, Peter P and Lehtimäki, Terho J and Paterson, Andrew D and Parsa, Afshin and Liu, Yongmei and van Duijn, Cornelia M and Siscovick, David S and Gudnason, Vilmundur and Jamshidi, Yalda and Salomaa, Veikko and Felix, Stephan B and Sanna, Serena and Ritchie, Marylyn D and Stricker, Bruno H and Stefansson, Kari and Boyer, Laurie A and Cappola, Thomas P and Olsen, Jesper V and Lage, Kasper and Schwartz, Peter J and Kääb, Stefan and Chakravarti, Aravinda and Ackerman, Michael J and Pfeufer, Arne and de Bakker, Paul IW and Newton-Cheh, Christopher (2014) Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization. Nature Genetics, 46 (8). pp. 826-836. DOI https://doi.org/10.1038/ng.3014

Arteaga-Salas, JM and Zuzan, H and Langdon, WB and Upton, GJG and Harrison, AP (2008) An overview of image-processing methods for Affymetrix GeneChips. Briefings in Bioinformatics, 9 (1). pp. 25-33. DOI https://doi.org/10.1093/bib/bbm055

B

B. Teif, Vladimir and G. Cherstvy, Andrey (2016) Chromatin and epigenetics: current biophysical views. AIMS Biophysics, 3 (1). pp. 88-98. DOI https://doi.org/10.3934/biophy.2016.1.88

Baguñà, J and Carranza, S and Paps, J and Ruiz-Trillo, I and Riutort, M (2000) Molecular taxonomy and phylogeny of the Tricladida. In: Interrelationships of the Platyhelminthes. Systematics Association Special Volumes . CRC Press, London, pp. 49-56. ISBN 9780748409037.

Baguñà, J and Ruiz-Trillo, I and Paps, J and Loukota, M and Ribera, C and Jondelius, U and Riutort, M (2001) The first bilaterian organisms: Simple or complex? New molecular evidence. International Journal of Developmental Biology, 45 (SUPPL.). S133-S134.

Baguñà, Jaume and Martinez, Pere and Paps, Jordi and Riutort, Marta (2008) Back in time: a new systematic proposal for the Bilateria. Philosophical Transactions of the Royal Society B: Biological Sciences, 363 (1496). pp. 1481-1491. DOI https://doi.org/10.1098/rstb.2007.2238

Baguñà, Jaume and Martinez, Pere and Paps, Jordi and Riutort, Marta (2008) Unravelling body plan and axial evolution in the Bilateria with molecular phylogenetic markers. In: Evolving Pathways. Cambridge University Press, pp. 217-238. ISBN 9780521875004. Official URL: http://dx.doi.org/10.1017/cbo9780511541582.017

Bai, Youhuang and Dai, Xiaozhuan and Harrison, Andrew and Johnston, Caroline and Chen, Ming (2016) Toward a next-generation atlas of RNA secondary structure. Briefings in Bioinformatics, 17 (1). pp. 63-77. DOI https://doi.org/10.1093/bib/bbv026

Barban, Nicola and Jansen, Rick and de Vlaming, Ronald and Vaez, Ahmad and Mandemakers, Jornt J and Tropf, Felix C and Shen, Xia and Wilson, James F and Chasman, Daniel I and Nolte, Ilja M and Tragante, Vinicius and van der Laan, Sander W and Perry, John RB and Kong, Augustine and Ahluwalia, Tarunveer S and Albrecht, Eva and Yerges-Armstrong, Laura and Atzmon, Gil and Auro, Kirsi and Ayers, Kristin and Bakshi, Andrew and Ben-Avraham, Danny and Berger, Klaus and Bergman, Aviv and Bertram, Lars and Bielak, Lawrence F and Bjornsdottir, Gyda and Bonder, Marc Jan and Broer, Linda and Bui, Minh and Barbieri, Caterina and Cavadino, Alana and Chavarro, Jorge E and Turman, Constance and Concas, Maria Pina and Cordell, Heather J and Davies, Gail and Eibich, Peter and Eriksson, Nicholas and Esko, Tõnu and Eriksson, Joel and Falahi, Fahimeh and Felix, Janine F and Fontana, Mark Alan and Franke, Lude and Gandin, Ilaria and Gaskins, Audrey J and Gieger, Christian and Gunderson, Erica P and Guo, Xiuqing and Hayward, Caroline and He, Chunyan and Hofer, Edith and Huang, Hongyan and Joshi, Peter K and Kanoni, Stavroula and Karlsson, Robert and Kiechl, Stefan and Kifley, Annette and Kluttig, Alexander and Kraft, Peter and Lagou, Vasiliki and Lecoeur, Cecile and Lahti, Jari and Li-Gao, Ruifang and Lind, Penelope A and Liu, Tian and Makalic, Enes and Mamasoula, Crysovalanto and Matteson, Lindsay and Mbarek, Hamdi and McArdle, Patrick F and McMahon, George and Meddens, S Fleur W and Mihailov, Evelin and Miller, Mike and Missmer, Stacey A and Monnereau, Claire and van der Most, Peter J and Myhre, Ronny and Nalls, Mike A and Nutile, Teresa and Kalafati, Ioanna Panagiota and Porcu, Eleonora and Prokopenko, Inga and Rajan, Kumar B and Rich-Edwards, Janet and Rietveld, Cornelius A and Robino, Antonietta and Rose, Lynda M and Rueedi, Rico and Ryan, Kathleen A and Saba, Yasaman and Schmidt, Daniel and Smith, Jennifer A and Stolk, Lisette and Streeten, Elizabeth and Tönjes, Anke and Thorleifsson, Gudmar and Ulivi, Sheila and Wedenoja, Juho and Wellmann, Juergen and Willeit, Peter and Yao, Jie and Yengo, Loic and Zhao, Jing Hua and Zhao, Wei and Zhernakova, Daria V and Amin, Najaf and Andrews, Howard and Balkau, Beverley and Barzilai, Nir and Bergmann, Sven and Biino, Ginevra and Bisgaard, Hans and Bønnelykke, Klaus and Boomsma, Dorret I and Buring, Julie E and Campbell, Harry and Cappellani, Stefania and Ciullo, Marina and Cox, Simon R and Cucca, Francesco and Toniolo, Daniela and Davey-Smith, George and Deary, Ian J and Dedoussis, George and Deloukas, Panos and van Duijn, Cornelia M and de Geus, Eco JC and Eriksson, Johan G and Evans, Denis A and Faul, Jessica D and Sala, Cinzia Felicita and Froguel, Philippe and Gasparini, Paolo and Girotto, Giorgia and Grabe, Hans-Jörgen and Greiser, Karin Halina and Groenen, Patrick JF and de Haan, Hugoline G and Haerting, Johannes and Harris, Tamara B and Heath, Andrew C and Heikkilä, Kauko and Hofman, Albert and Homuth, Georg and Holliday, Elizabeth G and Hopper, John and Hyppönen, Elina and Jacobsson, Bo and Jaddoe, Vincent WV and Johannesson, Magnus and Jugessur, Astanand and Kähönen, Mika and Kajantie, Eero and Kardia, Sharon LR and Keavney, Bernard and Kolcic, Ivana and Koponen, Päivikki and Kovacs, Peter and Kronenberg, Florian and Kutalik, Zoltan and La Bianca, Martina and Lachance, Genevieve and Iacono, William G and Lai, Sandra and Lehtimäki, Terho and Liewald, David C and Lindgren, Cecilia M and Liu, Yongmei and Luben, Robert and Lucht, Michael and Luoto, Riitta and Magnus, Per and Magnusson, Patrik KE and Martin, Nicholas G and McGue, Matt and McQuillan, Ruth and Medland, Sarah E and Meisinger, Christa and Mellström, Dan and Metspalu, Andres and Traglia, Michela and Milani, Lili and Mitchell, Paul and Montgomery, Grant W and Mook-Kanamori, Dennis and de Mutsert, Renée and Nohr, Ellen A and Ohlsson, Claes and Olsen, Jørn and Ong, Ken K and Paternoster, Lavinia and Pattie, Alison and Penninx, Brenda WJH and Perola, Markus and Peyser, Patricia A and Pirastu, Mario and Polasek, Ozren and Power, Chris and Kaprio, Jaakko and Raffel, Leslie J and Räikkönen, Katri and Raitakari, Olli and Ridker, Paul M and Ring, Susan M and Roll, Kathryn and Rudan, Igor and Ruggiero, Daniela and Rujescu, Dan and Salomaa, Veikko and Schlessinger, David and Schmidt, Helena and Schmidt, Reinhold and Schupf, Nicole and Smit, Johannes and Sorice, Rossella and Spector, Tim D and Starr, John M and Stöckl, Doris and Strauch, Konstantin and Stumvoll, Michael and Swertz, Morris A and Thorsteinsdottir, Unnur and Thurik, A Roy and Timpson, Nicholas J and Tung, Joyce Y and Uitterlinden, André G and Vaccargiu, Simona and Viikari, Jorma and Vitart, Veronique and Völzke, Henry and Vollenweider, Peter and Vuckovic, Dragana and Waage, Johannes and Wagner, Gert G and Wang, Jie Jin and Wareham, Nicholas J and Weir, David R and Willemsen, Gonneke and Willeit, Johann and Wright, Alan F and Zondervan, Krina T and Stefansson, Kari and Krueger, Robert F and Lee, James J and Benjamin, Daniel J and Cesarini, David and Koellinger, Philipp D and den Hoed, Marcel and Snieder, Harold and Mills, Melinda C (2016) Genome-wide analysis identifies 12 loci influencing human reproductive behavior. Nature Genetics, 48 (12). pp. 1462-1472. DOI https://doi.org/10.1038/ng.3698

Baselmans, Bart ML and Jansen, Rick and Ip, Hill F and van Dongen, Jenny and Abdellaoui, Abdel and van de Weijer, Margot P and Bao, Yanchun and Smart, Melissa and Kumari, Meena and Willemsen, Gonneke and Hottenga, Jouke-Jan and Boomsma, Dorret I and de Geus, Eco JC and Nivard, Michel G and Bartels, Meike (2019) Multivariate genome-wide analyses of the well-being spectrum. Nature Genetics, 51 (3). pp. 445-451. DOI https://doi.org/10.1038/s41588-018-0320-8

Beaney, Katherine E and Cooper, Jackie A and McLachlan, Stela and Wannamethee, S Goya and Jefferis, Barbara J and Whincup, Peter and Ben-Shlomo, Yoav and Price, Jacqueline F and Kumari, Meena and Wong, Andrew and Ong, Ken and Hardy, Rebecca and Kuh, Diana and Kivimaki, Mika and Kangas, Antti J and Soininen, Pasi and Ala-Korpela, Mika and Drenos, Fotios and Humphries, Steve E (2016) Variant rs10911021 that associates with coronary heart disease in type 2 diabetes, is associated with lower concentrations of circulating HDL cholesterol and large HDL particles but not with amino acids. Cardiovascular Diabetology, 15 (1). 115-. DOI https://doi.org/10.1186/s12933-016-0435-0

Bechtold, Ulrike and Albihlal, Waleed S and Lawson, Tracy and Fryer, Michael J and Sparrow, Penelope AC and Richard, François and Persad, Ramona and Bowden, Laura and Hickman, Richard and Martin, Cathie and Beynon, Jim L and Buchanan-Wollaston, Vicky and Baker, Neil R and Morison, James IL and Schöffl, Friedrich and Ott, Sascha and Mullineaux, Philip M (2013) Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection. Journal of Experimental Botany, 64 (11). pp. 3467-3481. DOI https://doi.org/10.1093/jxb/ert185

Bell, JT and Loomis, AK and Butcher, LM and Gao, F and Zhang, B and Hyde, CL and Sun, J and Wu, H and Ward, K and Harris, J and Scollen, S and Davies, MN and Schalkwyk, LC and Mill, J and Williams, FMK and Li, N and Deloukas, P and Beck, S and McMahon, SB and Wang, J and John, SL and Spector, TD (2014) Differential methylation of the TRPA1 promoter in pain sensitivity. Nature Communications, 5 (1). 2978-. DOI https://doi.org/10.1038/ncomms3978

Ben Abdelkhalek, Hanaa and Beckers, Anja and Schuster-Gossler, Karin and Pavlova, Maria N and Burkhardt, Hannelore and Lickert, Heiko and Rossant, Janet and Reinhardt, Richard and Schalkwyk, Leonard C and Müller, Ines and Herrmann, Bernhard G and Ceolin, Marcelo and Rivera-Pomar, Rolando and Gossler, Achim (2004) The mouse homeobox gene <i>Not</i> is required for caudal notochord development and affected by the truncate mutation. Genes &amp; Development, 18 (14). pp. 1725-1736. DOI https://doi.org/10.1101/gad.303504

Binder, E and Paya-Cano, JL and Sluyter, F and Schalkwyk, LC (2006) P.1.d.016 The effects of a selective serotonin reuptake inhibitor and a tricyclic antidepressant on the behaviour of chronically stressed 129SvemJ and C57BL/6J mice in the hole board and forced swim test. In: UNSPECIFIED, ? - ?.

Binder, Elke and Malki, Karim and Paya-Cano, Jose L and Fernandes, Cathy and Aitchison, Katherine J and Mathé, Aleksander A and Sluyter, Frans and Schalkwyk, Leonard C (2011) Antidepressants and the resilience to early-life stress in inbred mouse strains. Pharmacogenetics and Genomics, 21 (12). pp. 779-789. DOI https://doi.org/10.1097/fpc.0b013e32834b3f35

Blair, Jessica MA and Bavro, Vassiliy N and Ricci, Vito and Modi, Niraj and Cacciotto, Pierpaolo and Kleinekathӧfer, Ulrich and Ruggerone, Paolo and Vargiu, Attilio V and Baylay, Alison J and Smith, Helen E and Brandon, Yvonne and Galloway, David and Piddock, Laura JV (2015) AcrB drug-binding pocket substitution confers clinically relevant resistance and altered substrate specificity. Proceedings of the National Academy of Sciences, 112 (11). pp. 3511-3516. DOI https://doi.org/10.1073/pnas.1419939112

Boks, Marco P and Mierlo, Hans C van and Rutten, Bart PF and Radstake, Timothy RDJ and De Witte, Lot and Geuze, Elbert and Horvath, Steve and Schalkwyk, Leonard C and Vinkers, Christiaan H and Broen, Jasper CA and Vermetten, Eric (2015) Longitudinal changes of telomere length and epigenetic age related to traumatic stress and post-traumatic stress disorder. Psychoneuroendocrinology, 51. pp. 506-512. DOI https://doi.org/10.1016/j.psyneuen.2014.07.011

Bottani, S and Zabet, NR and Wendel, JF and Veitia, RA (2018) Gene expression dominance in allopolyploids: hypotheses and models. Trends in Plant Science, 23 (5). pp. 393-402. DOI https://doi.org/10.1016/j.tplants.2018.01.002

Bowles, Alexander MC (2021) Major transitions in the plant tree of life: insights from genes, genomes and traits. PhD thesis, University of Essex.

Breen, M and Deakin, L and Macdonald, B and Miller, S and Sibson, R and Tarttelin, E and Avner, P and Bourgade, F and Guenet, JL and Montagutelli, X and Poirier, C and Simon, D and Tailor, D and Bishop, M and Kelly, M and Rysavy, F and Rastan, S and Norris, D and Shepherd, D and Abbott, C and Pilz, A and Hodge, S and Jackson, I and Boyd, Y and Blair, H and Maslen, G and Todd, JA and Reed, PW and Stoye, J and Ashworth, A and McCarthy, L and Cox, R and Schalkwyk, LC and Lehrach, H and Klose, J and Gangadharan, U and Brown, S (1994) Towards high resolution maps of the mouse and human genomes?a facility for ordering markers to 0.1 cM resolution. Human Molecular Genetics, 3 (4). pp. 621-627. DOI https://doi.org/10.1093/hmg/3.4.621

Breen, M and Deakln, L and Macdonald, B and Miller, S and Sibson, R and Tarttelln, E and Avner, P and Bourgade, F and Guenet, JL and Montagutelli, X and Polrier, C and Simon, D and Tailor, D and Bishop, M and Kelly, M and Rysavy, F and Rastan, S and Norris, D and Shepherd, D and Abbott, C and Pllz, A and Hodge, S and Jackson, I and Boyd, Y and Blair, H and Maslen, G and A.todd, J and W.reed, P and Stoye, J and Ashworth, A and Mccarthy, L and Cox, R and Schalkwyk, L and Lehrach, H and Klose, J and Gangadharan, U and Brown, S (1994) Towards high resolution maps of the mouse and human genomes - a facility for ordering markers to 0.1 cm resolution. Human Molecular Genetics, 3 (4). 621 - 627. DOI https://doi.org/10.1093/hmg/3.4.621

Buitkamp, J and Ewald, D and Schalkwyk, L and Weiher, M and Masabanda, J and Sazanov, A and Lehrach, H and Fries, R (1998) Construction and characterisation of a gridded chicken cosmid library with four‐fold genomic coverage. Animal Genetics, 29 (4). pp. 295-301. DOI https://doi.org/10.1046/j.1365-2052.1998.00331.x

Butcher, LM and Meaburn, E and Dale, PS and Sham, P and Schalkwyk, LC and Craig, IW and Plomin, R (2005) Association analysis of mild mental impairment using DNA pooling to screen 432 brain-expressed single-nucleotide polymorphisms. Molecular Psychiatry, 10 (4). pp. 384-392. DOI https://doi.org/10.1038/sj.mp.4001589

Butcher, LM and Meaburn, E and Knight, J and Sham, PC and Schalkwyk, LC and Craig, IW and Plomin, R (2005) Allelotyping over 10,000 SNPs using DNA pools and microarrays nominates four SNPs associated with mild mental impairment. In: UNSPECIFIED, ? - ?.

Butcher, LM and Meaburn, E and Knight, J and Sham, PC and Schalkwyk, LC and Craig, IW and Plomin, R (2005) SNPs, microarrays, and pooled DNA: Identification of four loci associated with mild mental impairment in a sample of 6000 children. In: UNSPECIFIED, ? - ?.

Butcher, LM and Meaburn, EL and Craig, IW and Schalkwyk, LC and Plomin, R (2006) A genomewide association scan for GE interplay in childhood. In: XIV World Congress on Psychiatric Genetics, 2006-10-28 - 2006-11-01, Cagliari, Italy.

Butcher, Lee M and Meaburn, Emma and Knight, Jo and Sham, Pak C and Schalkwyk, Leonard C and Craig, Ian W and Plomin, Robert (2005) SNPs, microarrays and pooled DNA: identification of four loci associated with mild mental impairment in a sample of 6000 children. Human Molecular Genetics, 14 (10). pp. 1315-1325. DOI https://doi.org/10.1093/hmg/ddi142

C

Cai, Li and Schalkwyk, Leonard C and Schoeberlein-Stehli, Andreina and Zee, Robert YL and Smith, Avrial and Haaf, Thomas and Georges, Michel and Lehrach, Hans and Lindpaintner, Klaus (1997) Construction and Characterization of a 10-Genome Equivalent Yeast Artificial Chromosome Library for the Laboratory Rat,Rattus norvegicus. Genomics, 39 (3). pp. 385-392. DOI https://doi.org/10.1006/geno.1996.4494

Caspi, Avshalom and Williams, Benjamin and Kim-Cohen, Julia and Craig, Ian W and Milne, Barry J and Poulton, Richie and Schalkwyk, Leonard C and Taylor, Alan and Werts, Helen and Moffitt, Terrie E (2007) Moderation of breastfeeding effects on the IQ by genetic variation in fatty acid metabolism. Proceedings of the National Academy of Sciences, 104 (47). pp. 18860-18865. DOI https://doi.org/10.1073/pnas.0704292104

Catoni, M and Tsang, JMF and Greco, AP and Zabet, NR (2018) DMRcaller: a versatile R/Bioconductor package for detection and visualization of differentially methylated regions in CpG and non-CpG contexts. Nucleic Acids Research, 46 (19). e114-. DOI https://doi.org/10.1093/nar/gky602

Catoni, Marco and Griffiths, Jayne and Becker, Claude and Zabet, Nicolae Radu and Bayon, Carlos and Dapp, Mélanie and Lieberman‐Lazarovich, Michal and Weigel, Detlef and Paszkowski, Jerzy (2017) <scp>DNA</scp> sequence properties that predict susceptibility to epiallelic switching. The EMBO Journal, 36 (5). pp. 617-628. DOI https://doi.org/10.15252/embj.201695602

Charlebois, Robert L and Hofman, Jason D and Schalkwyk, Leonard C and Lam, Wan L and Doolittle, W Ford (1989) Genome mapping in halobacteria. Canadian Journal of Microbiology, 35 (1). pp. 21-29. DOI https://doi.org/10.1139/m89-004

Charlebois, Robert L and Schalkwyk, Leonard C and Hofman, Jason D and Doolittle, W Ford (1991) Detailed physical map and set of overlapping clones covering the genome of the archaebacterium Haloferax volcanii DS2. Journal of Molecular Biology, 222 (3). pp. 509-524. DOI https://doi.org/10.1016/0022-2836(91)90493-p

Chen, Dijun and Fu, Liang-Yu and Zhang, Zhao and Li, Guoliang and Zhang, Hang and Jiang, Li and Harrison, Andrew P and Shanahan, Hugh P and Klukas, Christian and Zhang, Hong-Yu and Ruan, Yijun and Chen, Ling-Ling and Chen, Ming (2014) Dissecting the chromatin interactome of microRNA genes. Nucleic Acids Research, 42 (5). pp. 3028-3043. DOI https://doi.org/10.1093/nar/gkt1294

Chu, Dominique and Zabet, Nicolae Radu and Mitavskiy, Boris (2009) Models of transcription factor binding: Sensitivity of activation functions to model assumptions. Journal of Theoretical Biology, 257 (3). pp. 419-429. DOI https://doi.org/10.1016/j.jtbi.2008.11.026

Chu, Dominique F and Zabet, Nicolae Radu and Hone, Andrew NW (2011) Optimal parameter settings for information processing in gene regulatory networks. Biosystems, 104 (2-3). pp. 99-108. DOI https://doi.org/10.1016/j.biosystems.2011.01.006

Churchill, GA and Airey, DC and Allayee, H and Angel, JM and Attie, AD and Beatty, J and Beavis, WD and Belknap, JK and Bennett, B and Berrettini, W and Bleich, A and Bogue, M and Broman, KW and Buck, KJ and Buckler, E and Burmeister, M and Chesler, EJ and Cheverud, JM and Clapcote, S and Cook, MN and Cox, RD and Crabbe, JC and Crusio, WE and Darvasi, A and Deschepper, CF and Doerge, RW and Farber, CR and Forejt, J and Gaile, D and Garlow, SJ and Geiger, H and Gershenfeld, H and Gordon, T and Gu, J and Gu, W and de Haan, G and Hayes, NL and Heller, C and Himmelbauer, H and Hitzemann, R and Hunter, K and Hsu, HC and Iraqi, FA and Ivandic, B and Jacob, HJ and Jansen, RC and Jepsen, KJ and Johnson, DK and Johnson, TE and Kempermann, G and Kendziorski, C and Kotb, M and Kooy, RF and Llamas, B and Lammert, F and Lassalle, JM and Lowenstein, PR and Lu, L and Lusis, A and Manly, KF and Marcucio, R and Matthews, D and Medrano, JF and Miller, DR and Mittleman, G and Mock, BA and Mogil, JS and Montagutelli, X and Morahan, G and Morris, DG and Mott, R and Nadeau, JH and Nagase, H and Nowakowski, RS and O'Hara, BF and Osadchuk, AV and Page, GP and Paigen, B and Paigen, K and Palmer, AA and Pan, HJ and Peltonen-Palotie, L and Peirce, J and Pomp, D and Pravenec, M and Prows, DR and Qi, Z and Reeves, RH and Roder, J and Rosen, GD and Schadt, EE and Schalkwyk, LC and Seltzer, Z and Shimomura, K and Shou, S and Sillanpää, MJ and Siracusa, LD and Snoeck, HW and Spearow, JL and Svenson, K (2004) The Collaborative Cross, a community resource for the genetic analysis of complex traits. Nature Genetics, 36 (11). pp. 1133-1137. DOI https://doi.org/10.1038/ng1104-1133

Cil, Emine (2022) Investigating the Role of Androgen Receptor Signalling in Oestrogen Receptor Positive Breast Cancer. PhD thesis, University of Essex.

Ciuta, Isabella (2024) Chromatin reorganisation and differential transcription factor binding in breast cancer. Masters thesis, University of Essex.

Clifton, BD and Librado, P and Yeh, S and Solares, E and Real, D and Jayasekera, S and Zhang, W and Shi, M and Park, R and Magie, R and Ma, H and Xia, X and Marco, A and Rozas, J and Ranz, JM (2017) Rapid Functional And Sequence Differentiation of a Tandemly-Repeated Species-Specific Multigene Family in Drosophila. Molecular Biology and Evolution, 34 (1). pp. 51-65. DOI https://doi.org/10.1093/molbev/msw212

Cline, SW and Schalkwyk, LC and Doolittle, WF (1989) Transformation of the archaebacterium Halobacterium volcanii with genomic DNA. Journal of Bacteriology, 171 (9). pp. 4987-4991. DOI https://doi.org/10.1128/jb.171.9.4987-4991.1989

Cline, Steven W and Lam, Wan L and Charlebois, Robert L and Schalkwyk, Leonard C and Doolittle, W Ford (1989) Transformation methods for halophilic archaebacteria. Canadian Journal of Microbiology, 35 (1). pp. 148-152. DOI https://doi.org/10.1139/m89-022

Cohen, A and Lam, WL and Charlebois, RL and Doolittle, WF and Schalkwyk, LC (1992) Localizing genes on the map of the genome of Haloferax volcanii, one of the Archaea. Proceedings of the National Academy of Sciences, 89 (5). pp. 1602-1606. DOI https://doi.org/10.1073/pnas.89.5.1602

Condliffe, Daniel and Wong, Andrew and Troakes, Claire and Proitsi, Petroula and Patel, Yogen and Chouliaras, Leonidas and Fernandes, Cathy and Cooper, Jonathan and Lovestone, Simon and Schalkwyk, Leonard and Mill, Jonathan and Lunnon, Katie (2014) Cross-region reduction in 5-hydroxymethylcytosine in Alzheimer's disease brain. Neurobiology of Aging, 35 (8). pp. 1850-1854. DOI https://doi.org/10.1016/j.neurobiolaging.2014.02.002

Corpas, Manuel and Valdivia-Granda, Willy and Torres, Nazareth and Greshake, Bastian and Coletta, Alain and Knaus, Alexej and Harrison, Andrew P and Cariaso, Mike and Moran, Federico and Nielsen, Fiona and Swan, Daniel and Weiss Solís, David Y and Krawitz, Peter and Schacherer, Frank and Schols, Peter and Yang, Huangming and Borry, Pascal and Glusman, Gustavo and Robinson, Peter N (2015) Crowdsourced direct-to-consumer genomic analysis of a family quartet. BMC Genomics, 16 (1). 910-. DOI https://doi.org/10.1186/s12864-015-1973-7

Correa, Clark (2024) Nucleosome repositioning in Glioblastoma Multiforme. Masters thesis, University of Essex.

Craig, Ian W and Mill, Jonathan and Craig, Gavin M and Loat, Caroline and Schalkwyk, Leonard C (2004) Application of microarrays to the analysis of the inactivation status of human X-linked genes expressed in lymphocytes. European Journal of Human Genetics, 12 (8). pp. 639-646. DOI https://doi.org/10.1038/sj.ejhg.5201212

Crnogorac-Jurcevic, T and Brown, JR and Lehrach, H and Schalkwyk, LC (1997) Tetraodon fluviatilis,a New Puffer Fish Model for Genome Studies. Genomics, 41 (2). pp. 177-184. DOI https://doi.org/10.1006/geno.1997.4646

Crombie, AT and Emery, H and McGenity, TJ and Murrell, JC (2017) Draft Genome Sequences of Three Terrestrial Isoprene-Degrading Rhodococcus Strains. Genome Announcements, 5 (45). e01256-e01217. DOI https://doi.org/10.1128/genomeA.01256-17

D

D'Souza, U and Sugden, K and Aitchison, KJ and Schalkwyk, LC and McGuffin, P and Pariante, M (2006) S.16.02 Depression: the GENDEP study. European Neuropsychopharmacology, 16. S187-S187. DOI https://doi.org/10.1016/s0924-977x(06)70079-7

D'Souza, UM and Sugden, K and Pariante, CM and Byers, H and Ward, M and Schalkwyk, LC and McGuffin, P and Aitchison, KJ (2006) Effects of antidepressant treatment on gene expression in mouse cultured cells. In: XIV World Congress on Psychiatric Genetics, 2006-10-28 - 2006-11-01, Cagliari, Italy.

Davies, MN and Meaburn, EL and Schalkwyk, LC (2010) Gene set enrichment; a problem of pathways. Briefings in Functional Genomics, 9 (5-6). pp. 385-390. DOI https://doi.org/10.1093/bfgp/elq021

Davies, MN and Volta, M and Pidsley, R and Lunnon, K and Dixit, A and Lovestone, S and Coarfa, C and Harris, RA and Milosavljevic, A and Troakes, C and Al-Sarraj, S and Dobson, R and Schalkwyk, LC and Mill, J (2012) Functional annotation of the human brain methylome identifies tissue-specific epigenetic variation across brain and blood. Genome Biology, 13 (6). R43-. DOI https://doi.org/10.1186/gb-2012-13-6-r43

Davis, OSP and Band, G and Pirinen, M and Haworth, CMA and Meaburn, EL and Kovas, Y and Harlaar, N and Docherty, SJ and Hanscombe, KB and Trzaskowski, M and Curtis, CJC and Strange, A and Freeman, C and Bellenguez, C and Su, Z and Pearson, R and Vukcevic, D and Langford, C and Deloukas, P and Hunt, S and Gray, E and Dronov, S and Potter, SC and Tashakkori-Ghanbaria, A and Edkins, S and Bumpstead, SJ and Blackwell, JM and Bramon, E and Brown, MA and Casas, JP and Corvin, A and Duncanson, A and Jankowski, JAZ and Markus, HS and Mathew, CG and Palmer, CNA and Rautanen, A and Sawcer, SJ and Trembath, RC and Viswanathan, AC and Wood, NW and Barroso, I and Peltonen, L and Dale, PS and Petrill, SA and Schalkwyk, LC and Craig, IW and Lewis, CM and Price, TS and Donnelly, P and Plomin, R and Spencer, CCA (2014) The correlation between reading and mathematics ability at age twelve has a substantial genetic component. Nature Communications, 5 (1). creators-Schalkwyk=3ALeonard_C=3A=3A. DOI https://doi.org/10.1038/ncomms5204

Davis, Oliver SP and Butcher, Lee M and Docherty, Sophia J and Meaburn, Emma L and Curtis, Charles JC and Simpson, Michael A and Schalkwyk, Leonard C and Plomin, Robert (2010) A Three-Stage Genome-Wide Association Study of General Cognitive Ability: Hunting the Small Effects. Behavior Genetics, 40 (6). pp. 759-767. DOI https://doi.org/10.1007/s10519-010-9350-4

Davis, Oliver SP and Plomin, Robert and Schalkwyk, Leonard C (2009) The SNPMaP package for R: a framework for genome-wide association using DNA pooling on microarrays. Bioinformatics, 25 (2). pp. 281-283. DOI https://doi.org/10.1093/bioinformatics/btn587

De Jager, Philip L and Srivastava, Gyan and Lunnon, Katie and Burgess, Jeremy and Schalkwyk, Leonard C and Yu, Lei and Eaton, Matthew L and Keenan, Brendan T and Ernst, Jason and McCabe, Cristin and Tang, Anna and Raj, Towfique and Replogle, Joseph and Brodeur, Wendy and Gabriel, Stacey and Chai, High S and Younkin, Curtis and Younkin, Steven G and Zou, Fanggeng and Szyf, Moshe and Epstein, Charles B and Schneider, Julie A and Bernstein, Bradley E and Meissner, Alex and Ertekin-Taner, Nilufer and Chibnik, Lori B and Kellis, Manolis and Mill, Jonathan and Bennett, David A (2014) Alzheimer's disease: early alterations in brain DNA methylation at ANK1, BIN1, RHBDF2 and other loci. Nature Neuroscience, 17 (9). pp. 1156-1163. DOI https://doi.org/10.1038/nn.3786

Dempster, Emma L and Pidsley, Ruth and Schalkwyk, Leonard C and Owens, Sheena and Georgiades, Anna and Kane, Fergus and Kalidindi, Sridevi and Picchioni, Marco and Kravariti, Eugenia and Toulopoulou, Timothea and Murray, Robin M and Mill, Jonathan (2011) Disease-associated epigenetic changes in monozygotic twins discordant for schizophrenia and bipolar disorder. Human Molecular Genetics, 20 (24). pp. 4786-4796. DOI https://doi.org/10.1093/hmg/ddr416

Docherty, SJ and Butcher, LM and Schalkwyk, LC and Plomin, R (2007) Applicability of DNA pools on 500 KSNP microarrays for cost-effective initial screens in genomewide association studies. BMC Genomics, 8 (1). p. 214. DOI https://doi.org/10.1186/1471-2164-8-214

Docherty, SJ and Davis, OSP and Kovas, Y and Meaburn, EL and Dale, PS and Petrill, SA and Schalkwyk, LC and Plomin, R (2010) A genome‐wide association study identifies multiple loci associated with mathematics ability and disability. Genes, Brain and Behavior, 9 (2). pp. 234-247. DOI https://doi.org/10.1111/j.1601-183x.2009.00553.x

Don, Nicola (2015) A single molecule approach to investigate how AP1 transcriptional regulators find their target sites on DNA. PhD thesis, University of Essex.

Doolittle, WF and Lam, WL and Schalkwyk, LC and Charlebois, RL and Cline, SW and Cohen, A (1992) Progress in developing the genetics of the halobacteria. Biochemical Society symposium, 58 (58). pp. 73-78.

Dumitrana, A M (2020) Modelling transcription factors diffusion in 3D using Hi-C data. Masters thesis, University of Essex.

Dumitrana, Ana Maria (2023) Computational Design of DNAzymes. Doctoral thesis, University of Essex.

de Lima Alves, Flávia and Stevenson, Andrew and Baxter, Esther and Gillion, Jenny LM and Hejazi, Fakhrossadat and Hayes, Sandra and Morrison, Ian EG and Prior, Bernard A and McGenity, Terry J and Rangel, Drauzio EN and Magan, Naresh and Timmis, Kenneth N and Hallsworth, John E (2015) Concomitant osmotic and chaotropicity-induced stresses in Aspergillus wentii: compatible solutes determine the biotic window. Current Genetics, 61 (3). pp. 457-477. DOI https://doi.org/10.1007/s00294-015-0496-8

E

Einsiedel, Edna and Allansdottir, Agnes and Allum, Nick and Bauer, Martin W and Berthomier, Anne and Chatjouli, Aigli and de Cheveigné, Suzanne and Downey, Robin and Gutteling, Jan M and Kohring, Mattias and others (2002) Brave new sheep the clone named Dolly. In: UNSPECIFIED Cambridge University Press. ISBN 9780521774390.

El Khoury, Louis and Ribbans, William J and Raleigh, Stuart M (2016) MMP3 and TIMP2 gene variants as predisposing factors for Achilles tendon pathologies: Attempted replication study in a British case–control cohort. Meta Gene, 9. pp. 52-55. DOI https://doi.org/10.1016/j.mgene.2016.03.007

Elbishbishy, Mohab Helmy (2019) Cell Signalling and MicroRNAs: Regulation and Evolution. PhD thesis, University of Essex.

Erezyilmaz, Deniz F and Hayward, Alex and Huang, Yan and Paps, Jordi and Acs, Zoltan and Delgado, Juan A and Collantes, Francisco and Kathirithamby, Jeyaraney (2014) Expression of the Pupal Determinant broad during Metamorphic and Neotenic Development of the Strepsipteran Xenos vesparum Rossi. PLoS ONE, 9 (4). e93614-e93614. DOI https://doi.org/10.1371/journal.pone.0093614

Exposito-Rodriguez, M and Laissue, PP and Littlejohn, GR and Smirnoff, N and Mullineaux, PM (2013) The Use of HyPer to Examine Spatial and Temporal Changes in H₂O₂ in High Light-Exposed Plants. In: Methods in Enzymology (Vol. 527). Elsevier, pp. 185-201. ISBN 9780124058828. Official URL: https://doi.org/10.1016/B978-0-12-405882-8.00010-6

Ezer, Daphne and Zabet, Nicolae Radu and Adryan, Boris (2014) Homotypic clusters of transcription factor binding sites: A model system for understanding the physical mechanics of gene expression. Computational and Structural Biotechnology Journal, 10 (17). pp. 63-69. DOI https://doi.org/10.1016/j.csbj.2014.07.005

Ezer, Daphne and Zabet, Nicolae Radu and Adryan, Boris (2014) Physical constraints determine the logic of bacterial promoter architectures. Nucleic Acids Research, 42 (7). pp. 4196-4207. DOI https://doi.org/10.1093/nar/gku078

F

Fei, P and Zekavati, A and Nasir, A and Alcaraz, A and Aldrovandi, M and Marsh, P and Norton, JD and Murphy, JJ (2014) Post-Transcriptional Regulation of BCL2 mRNA by the RNA-Binding Protein ZFP36L1 in Malignant B Cells. PloS One, 9 (7). creators-Norton=3AJohn_D=3A=3A.

Ferdous, Moshina M and Bao, Yanchun and Vinciotti, Veronica and Liu, Xiaohui and Wilson, Paul (2018) Predicting gene expression from genome wide protein binding profiles. Neurocomputing, 275. pp. 1490-1499. DOI https://doi.org/10.1016/j.neucom.2017.09.094

Ferguson, John N (2017) Natural variation of water use and water productivity in Arabidopsis thaliana. PhD thesis, University of Essex.

Fernandes, C and Hoyle, E and Dempster, E and Schalkwyk, LC and Collier, DA (2006) Performance deficit of α7 nicotinic receptor knockout mice in a delayed matching‐to‐place task suggests a mild impairment of working/episodic‐like memory. Genes, Brain and Behavior, 5 (6). pp. 433-440. DOI https://doi.org/10.1111/j.1601-183x.2005.00176.x

Fernandes, C and Liu, L and Paya-Cano, JL and Whatley, SA and Schalkwyk, LC (2004) Correlating behaviour with gene expression: Identifying genes for anxiety and cognition in the mouse. In: UNSPECIFIED, ? - ?.

Fernandes, Cathy and Liu, Lin and Paya-Cano, Jos L and Gregorov�, So A and Forejt, Ji and Schalkwyk, Leonard C (2004) Behavioral Characterization of Wild Derived Male Mice (Mus musculus musculus) of the PWD/Ph Inbred Strain: High Exploration Compared to C57BL/6J. Behavior Genetics, 34 (6). pp. 621-630. DOI https://doi.org/10.1007/s10519-004-5589-y

Fernandes, Cathy and Paya‐Cano, Jose L and Sluyter, Frans and D'Souza, Ursula and Plomin, Robert and Schalkwyk, Leonard C (2004) Hippocampal gene expression profiling across eight mouse inbred strains: towards understanding the molecular basis for behaviour. European Journal of Neuroscience, 19 (9). pp. 2576-2582. DOI https://doi.org/10.1111/j.0953-816x.2004.03358.x

Finer, S and Iqbal, MS and Lowe, R and Ogunkolade, BW and Pervin, S and Mathews, C and Smart, M and Alam, DS and Hitman, GA (2016) Is famine exposure during developmental life in rural Bangladesh associated with a metabolic and epigenetic signature in young adulthood? A historical cohort study. BMJ Open, 6 (11). e011768-e011768. DOI https://doi.org/10.1136/bmjopen-2016-011768

Freeman, Howard (2023) What Makes a Habitat a Home: Understanding Settlement and Recruitment Variation in European Sea Bass, Dicentrarchus labrax. Doctoral thesis, University of Essex.

G

Galsworthy, Michael J and Paya-Cano, Jose L and Liu, Lin and Monleón, Santiago and Gregoryan, Gregory and Fernandes, Cathy and Schalkwyk, Leonard C and Plomin, Robert (2005) Assessing Reliability, Heritability and General Cognitive Ability in a Battery of Cognitive Tasks for Laboratory Mice. Behavior Genetics, 35 (5). pp. 675-692. DOI https://doi.org/10.1007/s10519-005-3423-9

Garfield, Victoria and Fatemifar, Ghazaleh and Dale, Caroline and Smart, Melissa and Bao, Yanchun and Llewellyn, Clare H and Steptoe, Andrew and Zabaneh, Delilah and Kumari, Meena (2019) Assessing potential shared genetic aetiology between body mass index and sleep duration in 142,209 individuals. Genetic Epidemiology, 43 (2). pp. 207-214. DOI https://doi.org/10.1002/gepi.22174

Gaskell, George and Thompson, Paul and Allum, Nick (2002) Worlds apart? Public opinion in Europe and the USA. In: UNSPECIFIED Cambridge Univ Pr, p. 351. ISBN 9780521774390.

González-Estévez, Cristina and Felix, Daniel A and Smith, Matthew D and Paps, Jordi and Morley, Simon J and James, Victoria and Sharp, Tyson V and Aboobaker, A Aziz (2012) SMG-1 and mTORC1 Act Antagonistically to Regulate Response to Injury and Growth in Planarians. PLoS Genetics, 8 (3). e1002619-e1002619. DOI https://doi.org/10.1371/journal.pgen.1002619

Gordon, Jessica D (2023) Population and Seascape Genomics of the Deep-sea Octocoral Acanella arbuscula. Doctoral thesis, University of Essex.

Gorrie-Stone, TJ and Smart, MC and Saffari, A and Malki, K and Hannon, E and Burrage, J and Mill, J and Kumari, M and Schalkwyk, LC (2019) Bigmelon: tools for analysing large DNA methylation datasets. Bioinformatics, 35 (6). pp. 981-986. DOI https://doi.org/10.1093/bioinformatics/bty713

Gorrie-Stone, Tyler James (2019) DNA Methylation: Methods and Analyses. PhD thesis, University of Essex.

Graff, Mario and Poli, Riccardo (2010) Practical performance models of algorithms in evolutionary program induction and other domains. Artificial Intelligence, 174 (15). pp. 1254-1276. DOI https://doi.org/10.1016/j.artint.2010.07.005

Greenwood, Bethan N (2021) Corals at the extreme: partitioning the response of coral holobionts to marginal habitats. PhD thesis, University of Essex.

Guijarro, Cristina (2020) Unravelling the Origins and Evolution of the Animal Kingdom using Genomics. PhD thesis, University of Essex.

Gupta, Nikhil and Madapura, M Pradeepa and Bhat, U Anayat and Rao, MR Satyanarayana (2015) Mapping of Post-translational Modifications of Transition Proteins, TP1 and TP2, and Identification of Protein Arginine Methyltransferase 4 and Lysine Methyltransferase 7 as Methyltransferase for TP2. Journal of Biological Chemistry, 290 (19). pp. 12101-12122. DOI https://doi.org/10.1074/jbc.m114.620443

Gösele, Claudia and Hong, Liu and Kreitler, Thomas and Rossmann, Marlies and Hieke, Brigitte and Groß, Uwe and Kramer, Markus and Himmelbauer, Heinz and Bihoreau, Marie-Thérese and Kwitek-Black, Anne E and Twigger, Simon and Tonellato, Peter J and Jacob, Howard J and Schalkwyk, Leonard C and Lindpaintner, Klaus and Ganten, Detlev and Lehrach, Hans and Knoblauch, Margit (2000) High-Throughput Scanning of the Rat Genome Using Interspersed Repetitive Sequence-PCR Markers. Genomics, 69 (3). pp. 287-294. DOI https://doi.org/10.1006/geno.2000.6352

H

Hannon, Eilis and Dempster, Emma and Viana, Joana and Burrage, Joe and Smith, Adam R and Macdonald, Ruby and St Clair, David and Mustard, Colette and Breen, Gerome and Therman, Sebastian and Kaprio, Jaakko and Toulopoulou, Timothea and Pol, Hilleke E Hulshoff and Bohlken, Marc M and Kahn, Rene S and Nenadic, Igor and Hultman, Christina M and Murray, Robin M and Collier, David A and Bass, Nick and Gurling, Hugh and McQuillin, Andrew and Schalkwyk, Leonard and Mill, Jonathan (2016) An integrated genetic-epigenetic analysis of schizophrenia: evidence for co-localization of genetic associations and differential DNA methylation. Genome Biology, 17 (1). 176-. DOI https://doi.org/10.1186/s13059-016-1041-x

Hannon, Eilis and Lunnon, Katie and Schalkwyk, Leonard and Mill, Jonathan (2015) Interindividual methylomic variation across blood, cortex, and cerebellum: implications for epigenetic studies of neurological and neuropsychiatric phenotypes. Epigenetics, 10 (11). pp. 1024-1032. DOI https://doi.org/10.1080/15592294.2015.1100786

Hannon, Eilis and Marzi, Sarah J and Schalkwyk, Leonard S and Mill, Jonathan (2019) Genetic risk variants for brain disorders are enriched in cortical H3K27ac domains. Molecular Brain, 12 (1). 7-. DOI https://doi.org/10.1186/s13041-019-0429-4

Hannon, Eilis and Spiers, Helen and Viana, Joana and Pidsley, Ruth and Burrage, Joe and Murphy, Therese M and Troakes, Claire and Turecki, Gustavo and O'Donovan, Michael C and Schalkwyk, Leonard C and Bray, Nicholas J and Mill, Jonathan (2016) Methylation QTLs in the developing brain and their enrichment in schizophrenia risk loci. Nature Neuroscience, 19 (1). pp. 48-54. DOI https://doi.org/10.1038/nn.4182

Hannon, Ellis and Gorrie-Stone, Tyler J and Smart, Melissa C and Burrage, Joe and Hughes, Amanda and Bao, Yanchun and Kumari, Meena and Schalkwyk, Leonard C and Mill, Jonathan (2018) Leveraging DNA-Methylation Quantitative-Trait Loci to Characterize the Relationship between Methylomic Variation, Gene Expression, and Complex Traits. The American Journal of Human Genetics, 103 (5). pp. 654-665. DOI https://doi.org/10.1016/j.ajhg.2018.09.007

Harrison, Andrew and Shanahan, Hugh (2014) An Overview of Gene Regulation. In: Approaches in Integrative Bioinformatics. Springer Berlin Heidelberg, pp. 21-69. ISBN 9783642412806. Official URL: http://dx.doi.org/10.1007/978-3-642-41281-3_2

Harrison, Andrew P and Rowsell, Joanna and Camargo, Renata da Silva and Langdon, William B and Stalteri, Maria and Upton, Graham JG and Arteaga-Salas, Jose M (2008) The use of Affymetrix GeneChips as a tool for studying alternative forms of RNA. Biochemical Society Transactions, 36 (3). pp. 511-513. DOI https://doi.org/10.1042/bst0360511

Hills, David and Tracey, Simon and Masabanda, Julio and Fries, Ruedi and Schalkwyk, Leonard C and Lehrach, Hans and Miller, J Ross and Williams, John L (1999) A bovine YAC library containing four- to five-fold genome equivalents. Mammalian Genome, 10 (8). pp. 837-838. DOI https://doi.org/10.1007/s003359901100

Himmelbauer, Heinz and Wedemeyer, Niels and Haaf, Thomas and Wanker, Erich E and Schalkwyk, Leonard C and Lehrach, Hans (1998) IRS-PCR-based genetic mapping of the huntingtin interacting protein gene (HIP1) on mouse Chromosome 5. Mammalian Genome, 9 (1). pp. 26-31. DOI https://doi.org/10.1007/s003359900674

Hofman, Jason D and Schalkwyk, Leonard C and Doolittle, W Ford (1986) ISH51: a large, degenerate family of insertion sequence-like elements in the genome of the archaehacterium,<i>Halobacterium volcanii</i>. Nucleic Acids Research, 14 (17). pp. 6983-7000. DOI https://doi.org/10.1093/nar/14.17.6983

Hoheisel, J (1993) High resolution cosmid and P1 maps spanning the 14 Mb genome of the fission yeast S. pombe. Cell, 73 (1). pp. 109-120. DOI https://doi.org/10.1016/0092-8674(93)90164-l

Holland, Peter WH and Marlétaz, Ferdinand and Maeso, Ignacio and Dunwell, Thomas L and Paps, Jordi (2017) New genes from old: asymmetric divergence of gene duplicates and the evolution of development. Philosophical Transactions of the Royal Society B: Biological Sciences, 372 (1713). p. 20150480. DOI https://doi.org/10.1098/rstb.2015.0480

Huezo-Diaz, Patricia and Williamson, R and Nash, MW and Sim, SC and Alhberg, S and Hoda, F and Rietschel, M and Schmal, C and Farmer, A and Schulze, T and Hauser, J and Henigsberg, N and Maier, W and Zobel, A and Larsen, ER and Mors, O and Mendelewicz, J and Marusic, A and Perez, J and Schalkwyk, L and McGuffin, P and Craig, I and Ingelman-Sundberg, M and Aitchison, KJ (2006) CYP2D6 and CYP2C19 association data from GENDEP, a multicentre European study. In: UNSPECIFIED, ? - ?.

Hughes, Amanda and Smart, Melissa and Gorrie-Stone, Tyler and Hannon, Eilis and Mill, Jonathan and Bao, Yanchun and Burrage, Joe and Schalkwyk, Leo and Kumari, Meena (2018) Socioeconomic Position and DNA Methylation Age Acceleration across the Lifecourse. American Journal of Epidemiology, 187 (11). pp. 2346-2354. DOI https://doi.org/10.1093/aje/kwy155

Hunter, KW and Riba, L and Schalkwyk, L and Clark, M and Resenchuk, S and Beeghly, A and Su, J and Tinkov, F and Lee, P and Ramu, E and Lehrach, H and Housman, D (1996) Toward the construction of integrated physical and genetic maps of the mouse genome using interspersed repetitive sequence PCR (IRS-PCR) genomics. Genome Research, 6 (4). pp. 290-299. DOI https://doi.org/10.1101/gr.6.4.290

I

Illingworth, Robert S and Moffat, Michael and Mann, Abigail R and Read, David and Hunter, Chris J and Pradeepa, Madapura M and Adams, Ian R and Bickmore, Wendy A (2015) The E3 ubiquitin ligase activity of RING1B is not essential for early mouse development. Genes &amp; Development, 29 (18). pp. 1897-1902. DOI https://doi.org/10.1101/gad.268151.115

Ilott, NE and Schneider, T and Mill, J and Schalkwyk, LC and Brolese, G and Bizarro, L and Stolerman, IP and Dempster, E and Asherson, P (2014) Long-term effects of gestational nicotine exposure and food-restriction on gene expression in the striatum of adolescent rats. PloS One, 9 (2). creators-Schalkwyk=3ALeonard_C=3A=3A. DOI https://doi.org/10.1371/journal.pone.0088896

J

Janecka, M and Marzi, SJ and Parsons, MJ and Liu, L and Paya-Cano, JL and Smith, RG and Fernandes, C and Schalkwyk, LC (2017) Genetic polymorphisms and their association with brain and behavioural measures in heterogeneous stock mice. Scientific Reports, 7 (1). 41204-. DOI https://doi.org/10.1038/srep41204

Janecka, M and Mill, J and Basson, MA and Goriely, A and Spiers, H and Reichenberg, A and Schalkwyk, LC and Fernandes, C (2017) Advanced paternal age effects in neurodevelopmental disorders?review of potential underlying mechanisms. Translational Psychiatry, 7 (1). e1019-e1019. DOI https://doi.org/10.1038/tp.2016.294

Jeffries, Aaron R and Perfect, Leo W and Ledderose, Julia and Schalkwyk, Leonard C and Bray, Nicholas J and Mill, Jonathan and Price, Jack (2012) Stochastic Choice of Allelic Expression in Human Neural Stem Cells. Stem Cells, 30 (9). pp. 1938-1947. DOI https://doi.org/10.1002/stem.1155

Jimenez-Guri, Eva and Paps, Jordi and Garcia-Fernandez, Jordi and Salo, Emili (2006) Hox and ParaHox genes in Nemertodermatida, a basal bilaterian clade. The International Journal of Developmental Biology, 50 (8). pp. 675-679. DOI https://doi.org/10.1387/ijdb.062167ej

K

Karasawa, M and Zwacka, RM and Reuter, A and Fink, T and Hsieh, CL and Lichter, P and Francke, U and Welher, H (1993) The human homolog of the glomerulosclerosis gene Mpv17: structure and genomic organization. Human Molecular Genetics, 2 (11). pp. 1829-1834. DOI https://doi.org/10.1093/hmg/2.11.1829

Karlsson Linnér, Richard and Biroli, Pietro and Kong, Edward and Meddens, S Fleur W and Wedow, Robbee and Fontana, Mark Alan and Lebreton, Maël and Tino, Stephen P and Abdellaoui, Abdel and Hammerschlag, Anke R and Nivard, Michel G and Okbay, Aysu and Rietveld, Cornelius A and Timshel, Pascal N and Trzaskowski, Maciej and Vlaming, Ronald de and Zünd, Christian L and Bao, Yanchun and Buzdugan, Laura and Caplin, Ann H and Chen, Chia-Yen and Eibich, Peter and Fontanillas, Pierre and Gonzalez, Juan R and Joshi, Peter K and Karhunen, Ville and Kleinman, Aaron and Levin, Remy Z and Lill, Christina M and Meddens, Gerardus A and Muntané, Gerard and Sanchez-Roige, Sandra and Rooij, Frank J van and Taskesen, Erdogan and Wu, Yang and Zhang, Futao and Auton, Adam and Boardman, Jason D and Clark, David W and Conlin, Andrew and Dolan, Conor C and Fischbacher, Urs and Groenen, Patrick JF and Harris, Kathleen Mullan and Hasler, Gregor and Hofman, Albert and Ikram, Mohammad A and Jain, Sonia and Karlsson, Robert and Kessler, Ronald C and Kooyman, Maarten and MacKillop, James and Männikkö, Minna and Morcillo-Suarez, Carlos and McQueen, Matthew B and Schmidt, Klaus M and Smart, Melissa C and Sutter, Matthias and Thurik, A Roy and Uitterlinden, André G and White, Jon and Wit, Harriet de and Yang, Jian and Bertram, Lars and Boomsma, Dorret I and Esko, Tõnu and Fehr, Ernst and Hinds, David A and Johannesson, Magnus and Kumari, Meena and Laibson, David and Magnusson, Patrik KE and Meyer, Michelle N and Navarro, Arcadi and Palmer, Abraham A and Pers, Tune H and Posthuma, Danielle and Schunk, Daniel and Stein, Murray B and Svento, Rauli and Tiemeier, Henning and Timmers, Paul RHJ and Turley, Patrick and Ursano, Robert J and Wagner, Gert G and Wilson, James F and Gratten, Jacob and Lee, James J and Cesarini, David and Benjamin, Daniel J and Koellinger, Philipp D and Beauchamp, Jonathan P (2019) Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences. Nature Genomics, 51 (2). pp. 245-257. DOI https://doi.org/10.1038/s41588-018-0309-3

Kas, MJH and Fernandes, C and Schalkwyk, LC and Collier, DA (2007) Genetics of behavioural domains across the neuropsychiatric spectrum; of mice and men. Molecular Psychiatry, 12 (4). pp. 324-330. DOI https://doi.org/10.1038/sj.mp.4001979

Kas, MJH and Gelegen, C and Schalkwyk, LC and Collier, DA (2009) Interspecies Comparisons of Functional Genetic Variations and Their Implications in Neuropsychiatry. American Journal of Medical Genetics Part B-Neuropsychiatric Genetics, 150B (3). pp. 309-317. DOI https://doi.org/10.1002/ajmg.b.30815

Keers, R and Pedroso, I and Breen, G and Aitchison, KJ and Nolan, PM and Cichon, S and Nothen, MM and Rietschel, M and Schalkwyk, LC and Fernandes, C (2012) Reduced Anxiety and Depression-Like Behaviours in the Circadian Period Mutant Mouse Afterhours. PloS One, 7 (6). creators-Schalkwyk=3ALeonard_C=3A=3A. DOI https://doi.org/10.1371/journal.pone.0038263

Kember, RL and Dempster, EL and Lee, THA and Schalkwyk, LC and Mill, J and Fernandes, C (2012) Maternal separation is associated with strain‐specific responses to stress and epigenetic alterations to <i>Nr3c1</i>,<i> Avp</i>, and <i>Nr4a1</i> in mouse. Brain and Behavior, 2 (4). pp. 455-467. DOI https://doi.org/10.1002/brb3.69

Kenny, Nathan J and Sin, Yung Wa and Hayward, Alexander and Paps, Jordi and Chu, Ka Hou and Hui, Jerome HL (2015) The phylogenetic utility and functional constraint of microRNA flanking sequences. Proceedings of the Royal Society B: Biological Sciences, 282 (1803). p. 20142983. DOI https://doi.org/10.1098/rspb.2014.2983

Kheniche, A and Salhi, A and Harrison, A and Dowden, JM (2008) A deterministic algorithm for DNA sequence comparison. In: UNSPECIFIED, ? - ?.

Knoblauch, M and Gösele, C and Zimdahl, H and Hieke, B and Himmelbauer, H and Schalkwyk, L and Lindpaintner, K and Ganten, D and Lehrach, H (2000) New tools for the high throughput characterization of rat genomic DNA samples. Journal of Experimental Animal Science, 41 (1-2). pp. 35-37. DOI https://doi.org/10.1016/s0939-8600(00)80024-3

Kolthur-Seetharam, Ullas and Pradeepa, Madapura M and Gupta, Nikhil and Narayanaswamy, Rammohan and Rao, Manchanahalli R Satyanarayana (2009) Spatiotemporal Organization of AT- and GC-rich DNA and Their Association With Transition Proteins TP1 and TP2 in Rat Condensing Spermatids. Journal of Histochemistry &amp; Cytochemistry, 57 (10). pp. 951-962. DOI https://doi.org/10.1369/jhc.2009.953414

Koohy, H and Bolland, DJ and Matheson, LS and Schoenfelder, S and Stellato, C and Dimond, A and Várnai, C and Chovanec, P and Chessa, T and Denizot, J and Garcia, RM and Wingett, SW and Freire-Pritchett, P and Nagano, T and Hawkins, P and Stephens, L and Elderkin, S and Spivakov, M and Fraser, P and Corcoran, AE and Varga-Weisz, PD (2018) Genome organization and chromatin analysis identify transcriptional downregulation of insulin-like growth factor signaling as a hallmark of aging in developing B cells. Genome Biology, 19 (1). 126-. DOI https://doi.org/10.1186/s13059-018-1489-y

Kõks, S and Soomets, U and Paya-Cano, JL and Fernandes, C and Luuk, H and Plaas, M and Terasmaa, A and Tillmann, V and Noormets, K and Vasar, E and Schalkwyk, LC (2009) Wfs1 gene deletion causes growth retardation in mice and interferes with the growth hormone pathway. Physiological Genomics, 37 (3). pp. 249-259. DOI https://doi.org/10.1152/physiolgenomics.90407.2008

Kõks, S and Velthut, A and Sarapik, A and Altmäe, S and Reinmaa, E and Schalkwyk, LC and Fernandes, C and Lad, HV and Soomets, U and Jaakma, Ü and Salumets, A (2010) The differential transcriptome and ontology profiles of floating and cumulus granulosa cells in stimulated human antral follicles. MHR: Basic science of reproductive medicine, 16 (4). pp. 229-240. DOI https://doi.org/10.1093/molehr/gap103

Kõks, Sulev and Fernandes, Cathy and Kurrikoff, Kaido and Vasar, Eero and Schalkwyk, Leonard C (2008) Gene expression profiling reveals upregulation of Tlr4 receptors in Cckb receptor deficient mice. Behavioural Brain Research, 188 (1). pp. 62-70. DOI https://doi.org/10.1016/j.bbr.2007.10.020

Kõks, Sulev and Overall, Rupert W and Ivask, Marilin and Soomets, Ursel and Guha, Mithu and Vasar, Eero and Fernandes, Cathy and Schalkwyk, Leo C (2013) Silencing of the<i>WFS1</i>gene in HEK cells induces pathways related to neurodegeneration and mitochondrial damage. Physiological Genomics, 45 (5). pp. 182-190. DOI https://doi.org/10.1152/physiolgenomics.00122.2012

Kõks, Sulev and Soomets, Ursel and Plaas, Mario and Terasmaa, Anton and Noormets, Klari and Tillmann, Vallo and Vasar, Eero and Fernandes, Cathy and Schalkwyk, Leonard C (2011) Hypothalamic gene expression profile indicates a reduction in G protein signaling in the <i>Wfs1</i> mutant mice. Physiological Genomics, 43 (24). pp. 1351-1358. DOI https://doi.org/10.1152/physiolgenomics.00117.2011

L

Labrum, RW and Rajakulendran, S and Graves, TD and Eunson, LH and Bevan, R and Sweeney, MG and Hammans, SR and Tubridy, N and Britton, T and Carr, LJ and Ostergaard, JR and Kennedy, CR and Al-Memar, A and Kullmann, DM and Schorge, S and Temple, K and Davis, MB and Hanna, MG (2009) Large scale calcium channel gene rearrangements in episodic ataxia and hemiplegic migraine: implications for diagnostic testing. Journal of Medical Genetics, 46 (11). pp. 786-791. DOI https://doi.org/10.1136/jmg.2009.067967

Lad, Heena V and Liu, Lin and Payá-Cano, José L and Fernandes, Cathy and Schalkwyk, Leonard C (2007) Quantitative traits for the tail suspension test: automation, optimization, and BXD RI mapping. Mammalian Genome, 18 (6-7). pp. 482-491. DOI https://doi.org/10.1007/s00335-007-9029-1

Lad, Heena Vanmalibhai and Liu, Lin and Paya-Cano, Jose Luis and Parsons, Michael James and Kember, Rachel and Fernandes, Cathy and Schalkwyk, Leonard Cornelis (2010) Behavioural battery testing: Evaluation and behavioural outcomes in 8 inbred mouse strains. Physiology &amp; Behavior, 99 (3). pp. 301-316. DOI https://doi.org/10.1016/j.physbeh.2009.11.007

Langdon, WB and Harrison, AP (2009) Evolving DNA motifs to predict GeneChip probe performance. Algorithms for Molecular Biology, 4 (1). 6-. DOI https://doi.org/10.1186/1748-7188-4-6

Langdon, WB and Upton, GJG and Harrison, AP (2009) Probes containing runs of guanines provide insights into the biophysics and bioinformatics of Affymetrix GeneChips. Briefings in Bioinformatics, 10 (3). pp. 259-277. DOI https://doi.org/10.1093/bib/bbp018

Langdon, WB and Upton, GJG and da Silva Camargo, R and Harrison, AP (2010) A Survey of Spatial Defects in Homo Sapiens Affymetrix GeneChips. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 7 (4). pp. 647-653. DOI https://doi.org/10.1109/tcbb.2008.108

Langdon, William B and Harrison, Andrew P (2008) Evolving Regular Expressions for GeneChip Probe Performance Prediction. In: UNSPECIFIED, ? - ?.

Lee, James J and Wedow, Robbee and Okbay, Aysu and Kong, Edward and Maghzian, Omeed and Zacher, Meghan and Nguyen-Viet, Tuan Anh and Bowers, Peter and Sidorenko, Julia and Karlsson Linnér, Richard and Fontana, Mark Alan and Kundu, Tushar and Lee, Chanwook and Li, Hui and Li, Ruoxi and Royer, Rebecca and Timshel, Pascal N and Walters, Raymond K and Willoughby, Emily A and Yengo, Loïc and Alver, Maris and Bao, Yanchun and Clark, David W and Day, Felix R and Furlotte, Nicholas A and Joshi, Peter K and Kemper, Kathryn E and Kleinman, Aaron and Langenberg, Claudia and Mägi, Reedik and Trampush, Joey W and Verma, Shefali Setia and Wu, Yang and Lam, Max and Zhao, Jing Hua and Zheng, Zhili and Boardman, Jason D and Campbell, Harry and Freese, Jeremy and Harris, Kathleen Mullan and Hayward, Caroline and Herd, Pamela and Kumari, Meena and Lencz, Todd and Luan, Jian an and Malhotra, Anil K and Metspalu, Andres and Milani, Lili and Ong, Ken K and Perry, John RB and Porteous, David J and Ritchie, Marylyn D and Smart, Melissa C and Smith, Blair H and Tung, Joyce Y and Wareham, Nicholas J and Wilson, James F and Beauchamp, Jonathan P and Conley, Dalton C and Esko, Tõnu and Lehrer, Steven F and Magnusson, Patrik KE and Oskarsson, Sven and Pers, Tune H and Robinson, Matthew R and Thom, Kevin and Watson, Chelsea and Chabris, Christopher F and Meyer, Michelle N and Laibson, David I and Yang, Jian and Johannesson, Magnus and Koellinger, Philipp D and Turley, Patrick and Visscher, Peter M and Benjamin, Daniel J and Cesarini, David (2018) Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals. Nature Genetics, 50 (8). pp. 1112-1121. DOI https://doi.org/10.1038/s41588-018-0147-3

Lill, M and Kõks, S and Soomets, U and Schalkwyk, LC and Fernandes, C and Lutsar, I and Taba, P (2013) Peripheral blood RNA gene expression profiling in patients with bacterial meningitis. Frontiers in Neuroscience, 7 (7). 33-. DOI https://doi.org/10.3389/fnins.2013.00033

Liu, L and Fernandes, C and Brookes, K and Paya-Capo, J and Asherson, P and Schalkwyk, LC (2005) P.2.07 Selecting over-active extremes in outbred heterogeneous stock (HS) mice for gene expression profiling: nominating novel candidate genes for over-activity. In: UNSPECIFIED, ? - ?.

Ludeman, Danielle A and Farrar, Nathan and Riesgo, Ana and Paps, Jordi and Leys, Sally P (2014) Evolutionary origins of sensation in metazoans: functional evidence for a new sensory organ in sponges. BMC Evolutionary Biology, 14 (1). 3-. DOI https://doi.org/10.1186/1471-2148-14-3

Lunnon, Katie and Hannon, Eilis and Smith, Rebecca G and Dempster, Emma and Wong, Chloe and Burrage, Joe and Troakes, Claire and Al-Sarraj, Safa and Kepa, Agnieszka and Schalkwyk, Leonard and Mill, Jonathan (2016) Variation in 5-hydroxymethylcytosine across human cortex and cerebellum. Genome Biology, 17 (1). 27-. DOI https://doi.org/10.1186/s13059-016-0871-x

Lunnon, Katie and Keohane, Aoife and Pidsley, Ruth and Newhouse, Stephen and Riddoch-Contreras, Joanna and Thubron, Elisabeth B and Devall, Matthew and Soininen, Hikka and Kłoszewska, Iwona and Mecocci, Patrizia and Tsolaki, Magda and Vellas, Bruno and Schalkwyk, Leonard and Dobson, Richard and Malik, Afshan N and Powell, John and Lovestone, Simon and Hodges, Angela (2017) Mitochondrial genes are altered in blood early in Alzheimer's disease. Neurobiology of Aging, 53. pp. 36-47. DOI https://doi.org/10.1016/j.neurobiolaging.2016.12.029

Lunnon, Katie and Smith, Rebecca and Hannon, Eilis and De Jager, Philip L and Srivastava, Gyan and Volta, Manuela and Troakes, Claire and Al-Sarraj, Safa and Burrage, Joe and Macdonald, Ruby and Condliffe, Daniel and Harries, Lorna W and Katsel, Pavel and Haroutunian, Vahram and Kaminsky, Zachary and Joachim, Catharine and Powell, John and Lovestone, Simon and Bennett, David A and Schalkwyk, Leonard C and Mill, Jonathan (2014) Methylomic profiling implicates cortical deregulation of ANK1 in Alzheimer's disease. Nature Neuroscience, 17 (9). pp. 1164-1170. DOI https://doi.org/10.1038/nn.3782

M

Mahmoud, Osama and Harrison, Andrew and Gul, Asma and Khan, Zardad and Metodiev, Metodi V and Lausen, Berthold (2016) Minimizing Redundancy Among Genes Selected Based on the Overlapping Analysis. In: UNSPECIFIED, ? - ?.

Mahmoud, Osama and Harrison, Andrew and Perperoglou, Aris and Gul, Asma and Khan, Zardad and Metodiev, Metodi V and Lausen, Berthold (2014) A feature selection method for classification within functional genomics experiments based on the proportional overlapping score. BMC Bioinformatics, 15 (1). 274-. DOI https://doi.org/10.1186/1471-2105-15-274

Malki, K and Keers, R and Tosto, MG and Lourdusamy, A and Carboni, L and Domenici, E and Uher, R and McGuffin, P and Schalkwyk, LC (2014) The endogenous and reactive depression subtypes revisited: integrative animal and human studies implicate multiple distinct molecular mechanisms underlying major depressive disorder. BMC Medicine, 12 (1). 73-. DOI https://doi.org/10.1186/1741-7015-12-73

Malki, K and Tosto, MG and Pain, O and Sluyter, F and Mineur, YS and Crusio, WE and de Boer, S and Sandnabba, KN and Kesserwani, J and Robinson, E and Schalkwyk, LC and Asherson, P (2016) Comparative mRNA analysis of behavioral and genetic mouse models of aggression. American Journal of Medical Genetics Part B-Neuropsychiatric Genetics, 171 (3). pp. 427-436. DOI https://doi.org/10.1002/ajmg.b.32424

Malki, Karim and Campbell, James and Davies, Matthew and Keers, Robert and Uher, Rudolf and Ward, Malcolm and Paya‐Cano, Jose and Aitchinson, Katherine J and Binder, Elke and Sluyter, Frans and Kuhn, Karsten and Selzer, Stefan and Craig, Ian and McGuffin, Peter and Schalkwyk, Leonard C (2012) Pharmacoproteomic investigation into antidepressant response in two mouse inbred strains. PROTEOMICS, 12 (14). pp. 2355-2365. DOI https://doi.org/10.1002/pmic.201100306

Malki, Karim and Du Rietz, Ebba and Crusio, Wim E and Pain, Oliver and Paya‐Cano, Jose and Karadaghi, Rezhaw L and Sluyter, Frans and de Boer, Sietse F and Sandnabba, Kenneth and Schalkwyk, Leonard C and Asherson, Philip and Tosto, Maria Grazia (2016) Transcriptome analysis of genes and gene networks involved in aggressive behavior in mouse and zebrafish. American Journal of Medical Genetics Part B: Neuropsychiatric Genetics, 171 (6). pp. 827-838. DOI https://doi.org/10.1002/ajmg.b.32451

Malki, Karim and Lourdusamy, Anbarasu and Binder, Elke and Payá-Cano, Jose and Sluyter, Frans and Craig, Ian and Keers, Robert and McGuffin, Peter and Uher, Rudolf and Schalkwyk, Leonard C (2012) Antidepressant-dependent mRNA changes in mouse associated with hippocampal neurogenesis in a mouse model of depression. Pharmacogenetics and Genomics, 22 (11). pp. 765-776. DOI https://doi.org/10.1097/fpc.0b013e328356fa90

Malki, Karim and Mineur, Yann S and Tosto, Maria Grazia and Campbell, James and Karia, Priya and Jumabhoy, Irfan and Sluyter, Frans and Crusio, Wim E and Schalkwyk, Leonard C (2015) Pervasive and opposing effects of Unpredictable Chronic Mild Stress (UCMS) on hippocampal gene expression in BALB/cJ and C57BL/6J mouse strains. BMC Genomics, 16 (1). 262-. DOI https://doi.org/10.1186/s12864-015-1431-6

Malki, Karim and Pain, Oliver and Du Rietz, Ebba and Tosto, Maria Grazia and Paya-Cano, Jose and Sandnabba, Kenneth N and de Boer, Sietse and Schalkwyk, Leonard C and Sluyter, Frans (2014) Genes and Gene Networks Implicated in Aggression Related Behaviour. neurogenetics, 15 (4). pp. 255-266. DOI https://doi.org/10.1007/s10048-014-0417-x

Malki, Karim and Tosto, Maria Grazia and Jumabhoy, Irfan and Lourdusamy, Anbarasu and Sluyter, Frans and Craig, Ian and Uher, Rudolf and McGuffin, Peter and Schalkwyk, Leonard C (2013) Integrative Mouse and Human mRNA Studies Using WGCNA Nominates Novel Candidate Genes Involved in the Pathogenesis of Major Depressive Disorder. Pharmacogenomics, 14 (16). pp. 1979-1990. DOI https://doi.org/10.2217/pgs.13.154

Malki, Karim and Tosto, Maria Grazia and Mouriño‐Talín, Héctor and Rodríguez‐Lorenzo, Sabela and Pain, Oliver and Jumhaboy, Irfan and Liu, Tina and Parpas, Panos and Newman, Stuart and Malykh, Artem and Carboni, Lucia and Uher, Rudolf and McGuffin, Peter and Schalkwyk, Leonard C and Bryson, Kevin and Herbster, Mark (2017) Highly polygenic architecture of antidepressant treatment response: Comparative analysis of SSRI and NRI treatment in an animal model of depression. American Journal of Medical Genetics Part B: Neuropsychiatric Genetics, 174 (3). pp. 235-250. DOI https://doi.org/10.1002/ajmg.b.32494

Malki, Karim and Uher, Rudolf and Paya-Cano, Jose and Binder, Elke and Rietschel, Marcella and Zobel, Astrid and Mors, Ole and Hauser, Joanna and Henigsberg, Neven and Jerman, Borut and Souery, Daniel and Placentino, Anna and Ng, Mandy Y and Cohen-Woods, Sarah and Sluyter, Frans and Farmer, Anne and Aitchison, Katherine J and Craig, Ian W and Lewis, Cathryn M and McGuffin, Peter and Schalkwyk, Leonard C (2011) Convergent Animal and Human Evidence Suggests a Role of PPM1A Gene in Response to Antidepressants. Biological Psychiatry, 69 (4). pp. 360-365. DOI https://doi.org/10.1016/j.biopsych.2010.08.011

Marco, A (2017) Clearance of Maternal RNAs: Not a Mummy's Embryo Anymore. In: Zygotic Genome Activation. Methods in Molecular Biology . Springer, pp. 1-10. ISBN 9781493969869. Official URL: http://dx.doi.org/10.1007/978-1-4939-6988-3_1

Marco, A (2017) The Origin and Evolution of Maternal Genes. In: Oocytes. Results and Problems in Cell Differentiation, 63 . Springer, pp. 483-494. ISBN 978-3-319-60854-9. Official URL: https://doi.org/10.1007/978-3-319-60855-6_20

Marco, Antonio (2015) Selection Against Maternal microRNA Target Sites in Maternal Transcripts. G3 Genes|Genomes|Genetics, 5 (10). pp. 2199-2207. DOI https://doi.org/10.1534/g3.115.019497

Marco, Antonio (2014) Sex-biased expression of microRNAs in<i>Drosophila melanogaster</i>. Open Biology, 4 (4). p. 140024. DOI https://doi.org/10.1098/rsob.140024

Marin, R and Cortez, D and Lamanna, F and Pradeepa, MM and Leushkin, E and Julien, P and Liechti, A and Halbert, J and Brüning, T and Mössinger, K and Trefzer, T and Conrad, C and Kerver, HN and Wade, J and Tschopp, P and Kaessmann, H (2017) Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage. Genome Research, 27 (12). pp. 1974-1987. DOI https://doi.org/10.1101/gr.223727.117

Marlétaz, Ferdinand and Paps, Jordi and Maeso, Ignacio and Holland, Peter WH (2014) Discovery and Classification of Homeobox Genes in Animal Genomes. Methods in Molecular Biology, 1196. pp. 3-18. DOI https://doi.org/10.1007/978-1-4939-1242-1_1

Martin, Charlotte and Tansey, Katherine E and Schalkwyk, Leonard C and Powell, Timothy R (2015) The inflammatory cytokines: molecular biomarkers for major depressive disorder? Biomarkers in Medicine, 9 (2). pp. 169-180. DOI https://doi.org/10.2217/bmm.14.29

Martin, Patrick C N (2020) Dissecting the binding mechanisms of transcription factors to DNA using a statistical thermodynamics framework. PhD thesis, University of Essex.

Marzi, Sarah J and Leung, Szi Kay and Ribarska, Teodora and Hannon, Eilis and Smith, Adam R and Pishva, Ehsan and Poschmann, Jeremie and Moore, Karen and Troakes, Claire and Al-Sarraj, Safa and Beck, Stephan and Newman, Stuart and Lunnon, Katie and Schalkwyk, Leonard C and Mill, Jonathan (2018) A histone acetylome-wide association study of Alzheimer’s disease identifies disease-associated H3K27ac differences in the entorhinal cortex. Nature Neuroscience, 21 (11). pp. 1618-1627. DOI https://doi.org/10.1038/s41593-018-0253-7

Marzi, Sarah J and Meaburn, Emma L and Dempster, Emma L and Lunnon, Katie and Paya-Cano, Jose L and Smith, Rebecca G and Volta, Manuela and Troakes, Claire and Schalkwyk, Leonard C and Mill, Jonathan (2016) Tissue-specific patterns of allelically-skewed DNA methylation. Epigenetics, 11 (1). pp. 24-35. DOI https://doi.org/10.1080/15592294.2015.1127479

McCarthy, L and Hunter, K and Schalkwyk, L and Riba, L and Anson, S and Mott, R and Newell, W and Bruley, C and Bar, I and Ramu, E (1995) Efficient high-resolution genetic mapping of mouse interspersed repetitive sequence PCR products, toward integrated genetic and physical mapping of the mouse genome. Proceedings of the National Academy of Sciences, 92 (12). pp. 5302-5306. DOI https://doi.org/10.1073/pnas.92.12.5302

Meaburn, EL and Butcher, LM and Knight, J and Craig, I and Schalkwyk, LC and Plomin, R (2005) QTLs for reading disability at 7 years: Genotyping pooled DNA on 100K SNP microarrays. In: UNSPECIFIED, ? - ?.

Meaburn, EL and Butcher, LM and Liu, L and Fernandes, C and Hansen, V and Al-Chalabi, A and Plomin, R and Craig, IW and Schalkwyk, LC (2005) Genotyping DNA pools on microarrays: Tackling the QTL problem of large samples and large numbers of SNPs. BMC Genomics, 6 (1). creators-Schalkwyk=3ALeonard_C=3A=3A. DOI https://doi.org/10.1186/1471-2164-6-52

Meaburn, EL and Butcher, LM and Schalkwyk, LC and Plomin, R (2006) Genotyping pooled DNA using 100K SNP microarrays: a step towards genomewide association scans. Nucleic acids research, 34 (4). creators-Schalkwyk=3ALeonard_C=3A=3A. DOI https://doi.org/10.1093/nar/gnj027

Meaburn, EL and Butcher, ML and Liu, L and Fernandes, C and Sham, P and Plomin, R and Craig, I and Schalkwyk, L (2004) DNA pools on 10K genechips: Solving the QTL problem of large samples and large numbers of SNPS. In: UNSPECIFIED, ? - ?.

Meaburn, EL and Fernandes, C and Craig, IW and Plomin, R and Schalkwyk, LC (2009) Assessing Individual Differences in Genome-Wide Gene Expression in Human Whole Blood: Reliability Over Four Hours and Stability Over 10 Months. Twin Research and Human Genetics, 12 (4). pp. 372-380. DOI https://doi.org/10.1375/twin.12.4.372

Meaburn, EL and Harlaar, N and Craig, IW and Schalkwyk, LC and Plomin, R (2008) Quantitative trait locus association scan of early reading disability and ability using pooled DNA and 100K SNP microarrays in a sample of 5760 children. Molecular Psychiatry, 13 (7). pp. 729-740. DOI https://doi.org/10.1038/sj.mp.4002063

Meaburn, Emma and Butcher, Lee M and Harlaar, Nicole and Curtis, Charles and Craig, Ian W and Schalkwyk, Leonard C and Plomin, Robert (2006) An association scan using pooled DNA and 100k SNPS identifies a 'SNP set' for early reading. In: UNSPECIFIED, ? - ?.

Meaburn, Emma and Harlaar, Nicole and Craig, Ian W and Schalkwyk, Leonard C and Plomin, Robert (2007) Genomewide gene expression profiles as a biological basis for non-shared environment: MZ twins discordant for reading ability. In: UNSPECIFIED, ? - ?.

Meaburn, Emma L and Schalkwyk, Leonard C and Mill, Jonathan (2010) Allele-specific methylation in the human genome. Epigenetics, 5 (7). pp. 578-582. DOI https://doi.org/10.4161/epi.5.7.12960

Memon, FN and Owen, AM and Sanchez-Graillet, O and Upton, GJG and Harrison, AP (2010) Identifying the impact of G-quadruplexes on Affymetrix 3' arrays using cloud computing. Journal of integrative bioinformatics, 7 (2). 111-. DOI https://doi.org/10.1515/jib-2010-111

Memon, Farhat Naureen and Upton, Graham JG and Harrison, Andrew P (2010) A Comparative Study of the Impact of G‐Stack Probes on Various Affymetrix GeneChips of Mammalia. Journal of Nucleic Acids, 2010 (1). pp. 1-6. DOI https://doi.org/10.4061/2010/489736

Miettinen, ME and Smart, MC and Kinnunen, L and Harjutsalo, V and Reinert-Hartwall, L and Ylivinkka, I and Surcel, HM and Lamberg-Allardt, C and Hitman, GA and Tuomilehto, J (2017) Genetic determinants of serum 25-hydroxyvitamin D concentration during pregnancy and type 1 diabetes in the child. PLoS ONE, 12 (10). e0184942-e0184942. DOI https://doi.org/10.1371/journal.pone.0184942

Mikheeva, Liudmila (2022) A Novel Statistical Framework to Detect Complex 3D Genome Organisation Patterns into Topologically Associated Domains. PhD thesis, University of Essex.

Mill, J and Galsworthy, MJ and Paya‐Cano, JL and Sluyter, F and Schalkwyk, LC and Plomin, R and Asherson, P (2002) Home‐cage activity in heterogeneous stock (HS) mice as a model of baseline activity. Genes, Brain and Behavior, 1 (3). pp. 166-173. DOI https://doi.org/10.1034/j.1601-183x.2002.10304.x

Munnoch, JT and Martinez, MTP and Svistunenko, DA and Crack, JC and Le Brun, NE and Hutchings, MI (2016) Characterization of a putative NsrR homologue in Streptomyces venezuelae reveals a new member of the Rrf2 superfamily. Scientific Reports, 6 (1). 31597-. DOI https://doi.org/10.1038/srep31597

Müller, Marcus and Smolders, Jean WT and Meyer zum Gottesberge, Angela M and Reuter, Alexander and Zwacka, Ralf M and Weiher, Hans and Klinke, Rainer (1997) Loss of auditory function in transgenic Mpv17-deficient mice. Hearing Research, 114 (1-2). pp. 259-263. DOI https://doi.org/10.1016/s0378-5955(97)00175-5

N

Navarrete, K and Pedroso, I and De Jong, S and Stefansson, H and Steinberg, S and Stefansson, K and Ophoff, RA and Schalkwyk, LC and Collier, DA (2013) TCF4 (e2-2; ITF2): a schizophrenia-associated gene with pleiotropic effects on human disease. American Journal of Medical Genetics Part B-Neuropsychiatric Genetics, 162 (1). pp. 1-16. DOI https://doi.org/10.1002/ajmg.b.32109

Nock, Christina and Gauss, Christine and Schalkwyk, Leonard C and Klose, Joachim and Lehrach, Hans and Himmelbauer, Heinz (1999) Technology development at the interface of proteome research and genomics: Mapping nonpolymorphic proteins on the physical map of mouse chromosomes. Electrophoresis, 20 (4-5). pp. 1027-1032. DOI https://doi.org/10.1002/(sici)1522-2683(19990101)20:4/5<1027::aid-elps1027>3.0.co;2-i

Nyberg, J and Sandnabba, K and Schalkwyk, L and Sluyter, F (2004) Genetic and environmental (inter)actions in male mouse lines selected for aggressive and nonaggressive behavior. Genes, Brain and Behavior, 3 (2). pp. 101-109. DOI https://doi.org/10.1111/j.1601-183x.2003.0056.x

O

Okbay, Aysu and Baselmans, Bart ML and De Neve, Jan-Emmanuel and Turley, Patrick and Nivard, Michel G and Fontana, Mark Alan and Meddens, S Fleur W and Linnér, Richard Karlsson and Rietveld, Cornelius A and Derringer, Jaime and Gratten, Jacob and Lee, James J and Liu, Jimmy Z and de Vlaming, Ronald and Ahluwalia, Tarunveer S and Buchwald, Jadwiga and Cavadino, Alana and Frazier-Wood, Alexis C and Furlotte, Nicholas A and Garfield, Victoria and Geisel, Marie Henrike and Gonzalez, Juan R and Haitjema, Saskia and Karlsson, Robert and van der Laan, Sander W and Ladwig, Karl-Heinz and Lahti, Jari and van der Lee, Sven J and Lind, Penelope A and Liu, Tian and Matteson, Lindsay and Mihailov, Evelin and Miller, Michael B and Minica, Camelia C and Nolte, Ilja M and Mook-Kanamori, Dennis and van der Most, Peter J and Oldmeadow, Christopher and Qian, Yong and Raitakari, Olli and Rawal, Rajesh and Realo, Anu and Rueedi, Rico and Schmidt, Börge and Smith, Albert V and Stergiakouli, Evie and Tanaka, Toshiko and Taylor, Kent and Thorleifsson, Gudmar and Wedenoja, Juho and Wellmann, Juergen and Westra, Harm-Jan and Willems, Sara M and Zhao, Wei and Amin, Najaf and Bakshi, Andrew and Bergmann, Sven and Bjornsdottir, Gyda and Boyle, Patricia A and Cherney, Samantha and Cox, Simon R and Davies, Gail and Davis, Oliver SP and Ding, Jun and Direk, Nese and Eibich, Peter and Emeny, Rebecca T and Fatemifar, Ghazaleh and Faul, Jessica D and Ferrucci, Luigi and Forstner, Andreas J and Gieger, Christian and Gupta, Richa and Harris, Tamara B and Harris, Juliette M and Holliday, Elizabeth G and Hottenga, Jouke-Jan and De Jager, Philip L and Kaakinen, Marika A and Kajantie, Eero and Karhunen, Ville and Kolcic, Ivana and Kumari, Meena and Launer, Lenore J and Franke, Lude and Li-Gao, Ruifang and Liewald, David C and Koini, Marisa and Loukola, Anu and Marques-Vidal, Pedro and Montgomery, Grant W and Mosing, Miriam A and Paternoster, Lavinia and Pattie, Alison and Petrovic, Katja E and Pulkki-Råback, Laura and Quaye, Lydia and Räikkönen, Katri and Rudan, Igor and Scott, Rodney J and Smith, Jennifer A and Sutin, Angelina R and Trzaskowski, Maciej and Vinkhuyzen, Anna E and Yu, Lei and Zabaneh, Delilah and Attia, John R and Bennett, David A and Berger, Klaus and Bertram, Lars and Boomsma, Dorret I and Snieder, Harold and Chang, Shun-Chiao and Cucca, Francesco and Deary, Ian J and van Duijn, Cornelia M and Eriksson, Johan G and Bültmann, Ute and de Geus, Eco JC and Groenen, Patrick JF and Gudnason, Vilmundur and Hansen, Torben and Hartman, Catharine A and Haworth, Claire MA and Hayward, Caroline and Heath, Andrew C and Hinds, David A and Hyppönen, Elina and Iacono, William G and Järvelin, Marjo-Riitta and Jöckel, Karl-Heinz and Kaprio, Jaakko and Kardia, Sharon LR and Keltikangas-Järvinen, Liisa and Kraft, Peter and Kubzansky, Laura D and Lehtimäki, Terho and Magnusson, Patrik KE and Martin, Nicholas G and McGue, Matt and Metspalu, Andres and Mills, Melinda and de Mutsert, Renée and Oldehinkel, Albertine J and Pasterkamp, Gerard and Pedersen, Nancy L and Plomin, Robert and Polasek, Ozren and Power, Christine and Rich, Stephen S and Rosendaal, Frits R and den Ruijter, Hester M and Schlessinger, David and Schmidt, Helena and Svento, Rauli and Schmidt, Reinhold and Alizadeh, Behrooz Z and Sørensen, Thorkild IA and Spector, Tim D and Starr, John M and Stefansson, Kari and Steptoe, Andrew and Terracciano, Antonio and Thorsteinsdottir, Unnur and Thurik, A Roy and Timpson, Nicholas J and Tiemeier, Henning and Uitterlinden, André G and Vollenweider, Peter and Wagner, Gert G and Weir, David R and Yang, Jian and Conley, Dalton C and Smith, George Davey and Hofman, Albert and Johannesson, Magnus and Laibson, David I and Medland, Sarah E and Meyer, Michelle N and Pickrell, Joseph K and Esko, Tõnu and Krueger, Robert F and Beauchamp, Jonathan P and Koellinger, Philipp D and Benjamin, Daniel J and Bartels, Meike and Cesarini, David (2016) Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses. Nature Genetics, 48 (6). pp. 624-633. DOI https://doi.org/10.1038/ng.3552

O’Brien, Heath E and Hannon, Eilis and Hill, Matthew J and Toste, Carolina C and Robertson, Matthew J and Morgan, Joanne E and McLaughlin, Gemma and Lewis, Cathryn M and Schalkwyk, Leonard C and Hall, Lynsey S and Pardiñas, Antonio F and Owen, Michael J and O’Donovan, Michael C and Mill, Jonathan and Bray, Nicholas J (2018) Expression quantitative trait loci in the developing human brain and their enrichment in neuropsychiatric disorders. Genome Biology, 19 (1). 194-. DOI https://doi.org/10.1186/s13059-018-1567-1

P

Paps, J (2008) Filogènia Molecular dels Bilaterals: una aproximació multigènica. PhD thesis, UNSPECIFIED.

Paps, J and Baguna, J and Riutort, M (2009) Bilaterian Phylogeny: A Broad Sampling of 13 Nuclear Genes Provides a New Lophotrochozoa Phylogeny and Supports a Paraphyletic Basal Acoelomorpha. Molecular Biology and Evolution, 26 (10). pp. 2397-2406. DOI https://doi.org/10.1093/molbev/msp150

Paps, J and Holland, PWH and Shimeld, SM (2012) A genome-wide view of transcription factor gene diversity in chordate evolution: less gene loss in amphioxus? Briefings in Functional Genomics, 11 (2). pp. 177-186. DOI https://doi.org/10.1093/bfgp/els012

Paps, Jordi and Baguñà, Jaume and Riutort, Marta (2009) Lophotrochozoa internal phylogeny: new insights from an up-to-date analysis of nuclear ribosomal genes. Proceedings of the Royal Society B: Biological Sciences, 276 (1660). pp. 1245-1254. DOI https://doi.org/10.1098/rspb.2008.1574

Paps, Jordi and Holland, Peter WH (2018) Reconstruction of the ancestral metazoan genome reveals an increase in genomic novelty. Nature Communications, 9 (1). 1730-. DOI https://doi.org/10.1038/s41467-018-04136-5

Paps, Jordi and Medina-Chacón, Luis A and Marshall, Wyth and Suga, Hiroshi and Ruiz-Trillo, Iñaki (2013) Molecular Phylogeny of Unikonts: New Insights into the Position of Apusomonads and Ancyromonads and the Internal Relationships of Opisthokonts. Protist, 164 (1). pp. 2-12. DOI https://doi.org/10.1016/j.protis.2012.09.002

Paps, Jordi and Riutort, Marta (2012) Molecular phylogeny of the phylum Gastrotricha: New data brings together molecules and morphology. Molecular Phylogenetics and Evolution, 63 (1). pp. 208-212. DOI https://doi.org/10.1016/j.ympev.2011.12.010

Paps, Jordi and Xu, Fei and Zhang, Guofan and Holland, Peter WH (2015) Reinforcing the Egg-Timer: Recruitment of Novel Lophotrochozoa Homeobox Genes to Early and Late Development in the Pacific Oyster. Genome Biology and Evolution, 7 (3). pp. 677-688. DOI https://doi.org/10.1093/gbe/evv018

Parsons, MJ and Grimm, C and Paya-Cano, J and Fernandes, C and Liu, L and Philip, VM and Chesler, EJ and Nietfeld, W and Lehrach, H and Schalkwyk, LC (2012) Genetic variation in hippocampal microRNA expression differences in C57BL/6 J X DBA/2 J (BXD) recombinant inbred mouse strains. BMC Genomics, 13 (1). 476-. DOI https://doi.org/10.1186/1471-2164-13-476

Parsons, Michael J and Grimm, Christina H and Paya-Cano, Jose L and Sugden, Karen and Nietfeld, Wilfried and Lehrach, Hans and Schalkwyk, Leonard C (2008) Using hippocampal microRNA expression differences between mouse inbred strains to characterise miRNA function. Mammalian Genome, 19 (7-8). pp. 552-560. DOI https://doi.org/10.1007/s00335-008-9116-y

Pavlaki, I and Docquier, F and Chernukhin, I and Kita, G and Gretton, S and Clarkson, CT and Teif, VB and Klenova, E (2018) Poly(ADP-ribosyl)ation associated changes in CTCF-chromatin binding and gene expression in breast cells. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 1861 (8). pp. 781-730. DOI https://doi.org/10.1016/j.bbagrm.2018.06.010

Paya-Cano, JL and Sluyter, F and Mineur, YS and Fernandes, C and Crusio, WE and Schalkwyk, LC (2006) P.1.a.015 Strain differences in susceptibility to unpredictable chronic mild stress as assessed by hippocampal gene expression profiling. In: UNSPECIFIED, ? - ?.

Pidsley, R and Fernandes, C and Viana, J and Paya-Cano, JL and Liu, L and Smith, RG and Schalkwyk, LC and Mill, J (2012) DNA methylation at the Igf2/H19 imprinting control region is associated with cerebellum mass in outbred mice. Molecular Brain, 5 (1). 42-. DOI https://doi.org/10.1186/1756-6606-5-42

Pidsley, R and Wong, CCY and Volta, M and Lunnon, K and Mill, J and Schalkwyk, LC (2013) A data-driven approach to preprocessing Illumina 450K methylation array data. BMC Genomics, 14 (1). 293-. DOI https://doi.org/10.1186/1471-2164-14-293

Pine, Angela C (2021) The Development of Gene Therapy by way of DNAzymes, and a Computational Tool that Predicts Efficient DNAzymes. PhD thesis, University of Essex.

Porto, Tatiana V (2015) Structural and kinetic studies of a copper sensor protein in Streptomyces lividans. PhD thesis, University of Essex.

Powell, TR and McGuffin, P and D'Souza, UM and Cohen-Woods, S and Hosang, GM and Martin, C and Matthews, K and Day, RK and Farmer, AE and Tansey, KE and Schalkwyk, LC (2014) Putative transcriptomic biomarkers in the inflammatory cytokine pathway differentiate major depressive disorder patients from control subjects and bipolar disorder patients. PloS One, 9 (3). creators-Schalkwyk=3ALeonard_C=3A=3A. DOI https://doi.org/10.1371/journal.pone.0091076

Powell, TR and Smith, RG and Hackinger, S and Schalkwyk, LC and Uher, R and McGuffin, P and Mill, J and Tansey, KE (2013) DNA methylation in interleukin-11 predicts clinical response to antidepressants in GENDEP. Translational Psychiatry, 3 (9). e300-e300. DOI https://doi.org/10.1038/tp.2013.73

Powell, Timothy R and Powell‐Smith, Georgia and Haddley, Kate and Mcguffin, Peter and Quinn, John and Schalkwyk, Leonard C and Farmer, Anne E and D'Souza, Ursula M (2014) Mood‐stabilizers differentially affect housekeeping gene expression in human cells. International Journal of Methods in Psychiatric Research, 23 (2). pp. 279-288. DOI https://doi.org/10.1002/mpr.1435

Powell, Timothy R and Schalkwyk, Leonard C and Heffernan, Andrew L and Breen, Gerome and Lawrence, Timothy and Price, Tom and Farmer, Anne E and Aitchison, Katherine J and Craig, Ian W and Danese, Andrea and Lewis, Cathryn and McGuffin, Peter and Uher, Rudolf and Tansey, Katherine E and D'Souza, Ursula M (2013) Tumor necrosis factor and its targets in the inflammatory cytokine pathway are identified as putative transcriptomic biomarkers for escitalopram response. European Neuropsychopharmacology, 23 (9). pp. 1105-1114. DOI https://doi.org/10.1016/j.euroneuro.2012.09.009

Powell, Timothy R and Tansey, Katherine E and Breen, Gerome and Farmer, Anne E and Craig, Ian W and Uher, Rudolf and McGuffin, Peter and D’Souza, Ursula M and Schalkwyk, Leonard C (2013) ATP-binding cassette sub-family F member 1 (ABCF1) is identified as a putative therapeutic target of escitalopram in the inflammatory cytokine pathway. Journal of Psychopharmacology, 27 (7). pp. 609-615. DOI https://doi.org/10.1177/0269881113490329

Pradeepa, MM and Manjunatha, S and Sathish, V and Agrawal, Shipra and Rao, MRS (2008) Involvement of Importin-4 in the Transport of Transition Protein 2 into the Spermatid Nucleus. Molecular and Cellular Biology, 28 (13). pp. 4331-4341. DOI https://doi.org/10.1128/mcb.00519-07

Pradeepa, MM and Rao, MR (2007) Chromatin remodeling during mammalian spermatogenesis: role of testis specific histone variants and transition proteins. Society of Reproduction and Fertility supplement, 63. pp. 1-10.

Pradeepa, Madapura M and Grimes, Graeme R and Kumar, Yatendra and Olley, Gabrielle and Taylor, Gillian CA and Schneider, Robert and Bickmore, Wendy A (2016) Histone H3 globular domain acetylation identifies a new class of enhancers. Nature Genetics, 48 (6). pp. 681-686. DOI https://doi.org/10.1038/ng.3550

Pradeepa, Madapura M and Grimes, Graeme R and Taylor, Gillian CA and Sutherland, Heidi G and Bickmore, Wendy A (2014) Psip1/Ledgf p75 restrains<i>Hox</i>gene expression by recruiting both trithorax and polycomb group proteins. Nucleic Acids Research, 42 (14). pp. 9021-9032. DOI https://doi.org/10.1093/nar/gku647

Pradeepa, Madapura M and McKenna, Fionnuala and Taylor, Gillian CA and Bengani, Hemant and Grimes, Graeme R and Wood, Andrew J and Bhatia, Shipra and Bickmore, Wendy A (2017) Psip1/p52 regulates posterior Hoxa genes through activation of lncRNA Hottip. PLOS Genetics, 13 (4). e1006677-e1006677. DOI https://doi.org/10.1371/journal.pgen.1006677

Pradeepa, Madapura M and Nikhil, Gupta and Hari Kishore, Annavarapu and Bharath, Giriyapura N and Kundu, Tapas K and Rao, Manchanahalli R Satyanarayana (2009) Acetylation of Transition Protein 2 (TP2) by KAT3B (p300) Alters Its DNA Condensation Property and Interaction with Putative Histone Chaperone NPM3. Journal of Biological Chemistry, 284 (43). pp. 29956-29967. DOI https://doi.org/10.1074/jbc.m109.052043

Pradeepa, Madapura M and Sutherland, Heidi G and Ule, Jernej and Grimes, Graeme R and Bickmore, Wendy A (2012) Psip1/Ledgf p52 Binds Methylated Histone H3K36 and Splicing Factors and Contributes to the Regulation of Alternative Splicing. PLoS Genetics, 8 (5). e1002717-e1002717. DOI https://doi.org/10.1371/journal.pgen.1002717

Priestley, A (1998) Molecular and biochemical characterisation of DNA-dependent protein kinase-defective rodent mutant irs-20. Nucleic Acids Research, 26 (8). pp. 1965-1973. DOI https://doi.org/10.1093/nar/26.8.1965

Punapart, M and Eltermaa, M and Oflijan, J and Sütt, S and Must, A and Kõks, S and Schalkwyk, LC and Fernandes, C and Vasar, E and Soomets, U and Terasmaa, A (2014) Effect of chronic valproic Acid treatment on hepatic gene expression profile in wfs1 knockout mouse. PPAR Research, 2014. pp. 1-11. DOI https://doi.org/10.1155/2014/349525

R

Rahmioglu, N and Macgregor, S and Drong, AW and Hedman, AK and Harris, HR and Randall, JC and Prokopenko, I and Nyholt, DR and Morris, AP and Montgomery, GW and Missmer, SA and Lindgren, CM and Zondervan, KT (2015) Genome-wide enrichment analysis between endometriosis and obesity-related traits reveals novel susceptibility loci. Human Molecular Genetics, 24 (4). pp. 1185-1199. DOI https://doi.org/10.1093/hmg/ddu516

Rajatileka, Shavanthi and Odd, David and Robinson, Matthew T and Spittle, Alexandra C and Dwomoh, Louis and Williams, Maggie and Harding, David and Wagstaff, Miles and Owen, Marie and Crosby, Charlene and Ching, Jared and Molnár, Elek and Luyt, Karen and Váradi, Anikó (2018) Variants of the EAAT2 Glutamate Transporter Gene Promoter Are Associated with Cerebral Palsy in Preterm Infants. Molecular Neurobiology, 55 (3). pp. 2013-2024. DOI https://doi.org/10.1007/s12035-017-0462-1

Riutort, M and Paps, J and Ruiz-Trillo, I (2014) Bilaterians: The Evolutionary Advantage of Being Two-Sided. In: The Tree of Life. Sinauer Associates Inc. ISBN 978-1-60535-229-9.

Ronald, Angelica and Butcher, Lee M and Docherty, Sophia and Davis, Oliver SP and Schalkwyk, Leonard C and Craig, Ian W and Plomin, Robert (2010) A Genome-Wide Association Study of Social and Non-Social Autistic-Like Traits in the General Population Using Pooled DNA, 500 K SNP Microarrays and Both Community and Diagnosed Autism Replication Samples. Behavior Genetics, 40 (1). pp. 31-45. DOI https://doi.org/10.1007/s10519-009-9308-6

Ronald, Angelica and Butcher, Lee M and Docherty, Sophia J and Davis, Oliver SP and Schalkwyk, Leonard C and Craig, Ian W and Plomin, Robert (2010) Response to comment by Stuart Macgregor. Behavior Genetics, 40 (1). p. 48. DOI https://doi.org/10.1007/s10519-009-9319-3

Rowsell, J and da Silva Camargo, R and Langdon, WB and Stalteri, MA and Harrison, AP (2010) Uncovering the expression patterns of chimeric transcripts using surveys of affymetrix GeneChips. Journal of integrative bioinformatics, 7 (3). DOI https://doi.org/10.1515/jib-2010-137

Ruiz-Trillo, I and Paps, J and Loukota, M and Ribera, C and Jondelius, U and Baguñà, J and Riutort, M (2002) A phylogenetic analysis of myosin heavy chain type II sequences corroborates that Acoela and Nemertodermatida are basal bilaterians. Proceedings of the National Academy of Sciences, 99 (17). pp. 11246-11251. DOI https://doi.org/10.1073/pnas.172390199

S

Salhi, A and Pattas, E (2010) An Evolutionary Approach to Linear Programming. International Journal of Optimization: Theory, Methods and Applications, 2 (2). pp. 138-149.

Salhi, Abdellah and Rodríguez, José Antonio Vázquez and Zhang, Qingfu (2007) An estimation of distribution algorithm with guided mutation for a complex flow shop scheduling problem. In: GECCO07: Genetic and Evolutionary Computation Conference, ? - ?.

Sanchez-Graillet, O and Stalteri, MA and Rowsell, J and Upton, GJG and Harrison, AP (2010) Using surveys of Affymetrix GeneChips to study antisense expression. Journal of integrative bioinformatics, 7 (2). pp. 1662-1668. DOI https://doi.org/10.1515/jib-2010-114

Schalkwyk, LC and Fernandes, C and Nash, MW and Kurrikoff, K and Vasar, E and Kõks, S (2007) Interpretation of knockout experiments: the congenic footprint. Genes, Brain and Behavior, 6 (3). pp. 299-303. DOI https://doi.org/10.1111/j.1601-183x.2007.00304.x

Schalkwyk, LC and Himmelbauer, H and Lehrach, H (1999) Toward the mammalian transcript map. Archiv fur Tierzucht, 42 (6 SUPP). pp. 67-73.

Schalkwyk, Leonard C and Charlebois, Robert L and Doolittle, W Ford (1993) Insertion sequences on plasmid pHV1 of <i>Haloferax volcanii</i>. Canadian Journal of Microbiology, 39 (2). pp. 201-206. DOI https://doi.org/10.1139/m93-028

Schalkwyk, Leonard C and Cusack, Brian and Dunkel, Ilona and Hopp, Martina and Kramer, Markus and Palczewski, Stefanie and Piefke, Jutta and Scheel, Sabine and Weiher, Michael and Wenske, Gunther and Lehrach, Hans and Himmelbauer, Heinz (2001) Advanced Integrated Mouse YAC Map Including BAC Framework. Genome Research, 11 (12). pp. 2142-2150. DOI https://doi.org/10.1101/gr.176201

Schalkwyk, Leonard C and Jung, Martin and Daser, Angelika and Weiher, Michael and Walter, Jörn and Himmelbauer, Heinz and Lehrach, Hans (1999) Panel of Microsatellite Markers for Whole-Genome Scans and Radiation Hybrid Mapping and a Mouse Family Tree. Genome Research, 9 (9). pp. 878-887. DOI https://doi.org/10.1101/gr.9.9.878

Schalkwyk, Leonard C and Meaburn, Emma L and Smith, Rebecca and Dempster, Emma L and Jeffries, Aaron R and Davies, Matthew N and Plomin, Robert and Mill, Jonathan (2010) Allelic Skewing of DNA Methylation Is Widespread across the Genome. The American Journal of Human Genetics, 86 (2). pp. 196-212. DOI https://doi.org/10.1016/j.ajhg.2010.01.014

Schalkwyk, Leonard C and Weiher, Michael and Kirby, Michelle and Cusack, Brian and Himmelbauer, Heinz and Lehrach, Hans (1998) Refined radiation hybrid map of mouse Chromosome 17. Mammalian Genome, 9 (10). pp. 807-811. DOI https://doi.org/10.1007/s003359900871

Schoech, Armin P and Zabet, Nicolae Radu (2014) Facilitated diffusion buffers noise in gene expression. Physical Review E, 90 (3). 032701-. DOI https://doi.org/10.1103/physreve.90.032701

Scotti, John S and Leung, Ivanhoe KH and Ge, Wei and Bentley, Michael A and Paps, Jordi and Kramer, Holger B and Lee, Joongoo and Aik, WeiShen and Choi, Hwanho and Paulsen, Steinar M and Bowman, Lesley AH and Loik, Nikita D and Horita, Shoichiro and Ho, Chia-hua and Kershaw, Nadia J and Tang, Christoph M and Claridge, Timothy DW and Preston, Gail M and McDonough, Michael A and Schofield, Christopher J (2014) Human oxygen sensing may have origins in prokaryotic elongation factor Tu prolyl-hydroxylation. Proceedings of the National Academy of Sciences, 111 (37). pp. 13331-13336. DOI https://doi.org/10.1073/pnas.1409916111

Sikk, Katrin (2011) Peripheral blood RNA expression profiling in illicit methcathinone users reveals effect on immune system. Frontiers in Genetics, 2 (AUG). 42-. DOI https://doi.org/10.3389/fgene.2011.00042

Simons, Michelle and Pollard, Mark R and Hughes, Craig D and Ward, Andrew D and Van Houten, Bennett and Towrie, Mike and Botchway, Stan W and Parker, Anthony W and Kad, Neil M (2015) Directly interrogating single quantum dot labelled UvrA2 molecules on DNA tightropes using an optically trapped nanoprobe. Scientific Reports, 5 (1). 18486-. DOI https://doi.org/10.1038/srep18486

Simpson, CL and Knight, J and Butcher, LM and Hansen, VK and Meaburn, EL and Schalkwyk, LC and Craig, IW and Powell, JF and Sham, PC and Al-Chalabi, A (2005) A central resource for accurate allele frequency estimation from pooled DNA genotyped on DNA microarrays. Nucleic Acids Research, 33 (3). e25-e25. DOI https://doi.org/10.1093/nar/gni028

Sluyter, Frans and Schalkwyk, Leonard C (2003) Aggression across species. Behavior Genetics, 33 (5). pp. 457-460. DOI https://doi.org/10.1023/a:1025744430180

Smith, Adam R and Smith, Rebecca G and Condliffe, Daniel and Hannon, Eilis and Schalkwyk, Leonard and Mill, Jonathan and Lunnon, Katie (2016) Increased DNA methylation near TREM2 is consistently seen in the superior temporal gyrus in Alzheimer's disease brain. Neurobiology of Aging, 47. pp. 35-40. DOI https://doi.org/10.1016/j.neurobiolaging.2016.07.008

Smith, RG and Fernandes, C and Kember, R and Schalkwyk, LC and Buxbaum, J and Reichenberg, A and Mill, J (2014) Transcriptomic changes in the frontal cortex associated with paternal age. Molecular Autism, 5 (1). creators-Schalkwyk=3ALeonard_C=3A=3A. DOI https://doi.org/10.1186/2040-2392-5-24

Smith, RG and Hannon, E and De Jager, PL and Chibnik, L and Lott, SJ and Condliffe, D and Smith, AR and Haroutunian, V and Troakes, C and Al-Sarraj, S and Bennett, DA and Powell, J and Lovestone, S and Schalkwyk, L and Mill, J and Lunnon, K (2018) Elevated DNA methylation across a 48-kb region spanning the HOXA gene cluster is associated with Alzheimer's disease neuropathology. Alzheimer's and Dementia, 14 (12). pp. 1580-1588. DOI https://doi.org/10.1016/j.jalz.2018.01.017

Smith, RG and Reichenberg, A and Kember, RL and Buxbaum, JD and Schalkwyk, LC and Fernandes, C and Mill, J (2013) Advanced paternal age is associated with altered DNA methylation at brain-expressed imprinted loci in inbred mice: implications for neuropsychiatric disease. Molecular Psychiatry, 18 (6). pp. 635-636. DOI https://doi.org/10.1038/mp.2012.88

Smith, Rebecca G and Kember, Rachel L and Mill, Jonathan and Fernandes, Cathy and Schalkwyk, Leonard C and Buxbaum, Joseph D and Reichenberg, Abraham (2009) Advancing Paternal Age Is Associated with Deficits in Social and Exploratory Behaviors in the Offspring: A Mouse Model. PLoS ONE, 4 (12). e8456-e8456. DOI https://doi.org/10.1371/journal.pone.0008456

Spiers, H and Hannon, E and Schalkwyk, LC and Bray, NJ and Mill, J (2017) 5-hydroxymethylcytosine is highly dynamic across human fetal brain development. BMC Genomics, 18 (1). 738-. DOI https://doi.org/10.1186/s12864-017-4091-x

Stalteri, Maria A and Harrison, Andrew P (2007) Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips. BMC Bioinformatics, 8 (1). 13-. DOI https://doi.org/10.1186/1471-2105-8-13

Stephens, Christopher R and Poli, Riccardo (2007) Coarse-Grained Dynamics for Generalized Recombination. IEEE Transactions on Evolutionary Computation, 11 (4). pp. 541-557. DOI https://doi.org/10.1109/tevc.2006.884043

Stolerman, IP and Chamberlain, S and Bizarro, L and Fernandes, C and Schalkwyk, L (2004) The role of nicotinic receptor α7 subunits in nicotine discrimination. Neuropharmacology, 46 (3). pp. 363-371. DOI https://doi.org/10.1016/j.neuropharm.2003.10.002

Stracquadanio, Giovanni and Wang, Xuting and Wallace, Marsha D and Grawenda, Anna M and Zhang, Ping and Hewitt, Juliet and Zeron-Medina, Jorge and Castro-Giner, Francesc and Tomlinson, Ian P and Goding, Colin R and Cygan, Kamil J and Fairbrother, William G and Thomas, Laurent F and Sætrom, Pål and Gemignani, Federica and Landi, Stefano and Schuster-Böckler, Benjamin and Bell, Douglas A and Bond, Gareth L (2016) The importance of p53 pathway genetics in inherited and somatic cancer genomes. Nature Reviews Cancer, 16 (4). pp. 251-265. DOI https://doi.org/10.1038/nrc.2016.15

Straw, Megan Laura (2019) Storing copper in Streptomyces lividans: structural and biochemical properties of a copper storage protein. PhD thesis, University of Essex.

Sugden, K and D'Souza, UM and Aitchison, KJ and Schalkwyk, LC and McGuffin, P and Byers, H and Campbell, J and Hye, A and Pariante, CM (2007) P.1.31 Gene expression analyses of mouse fibroblast cell line L929 after antidepressant treatment. European Neuropsychopharmacology, 17. S27-S28. DOI https://doi.org/10.1016/s0924-977x(07)70032-9

Sugden, K and D'Souza, UM and McGuffin, P and Schalkwyk, LC and Aitchison, KJ and Pariante, CM (2005) Gene expression analyses of a mouse fibroblast cell line after antidepressant treatment. In: UNSPECIFIED, ? - ?.

T

Talmud, Philippa J and Cooper, Jackie A and Morris, Richard W and Dudbridge, Frank and Shah, Tina and Engmann, Jorgen and Dale, Caroline and White, Jon and McLachlan, Stela and Zabaneh, Delilah and Wong, Andrew and Ong, Ken K and Gaunt, Tom and Holmes, Michael V and Lawlor, Debbie A and Richards, Marcus and Hardy, Rebecca and Kuh, Diana and Wareham, Nicholas and Langenberg, Claudia and Ben-Shlomo, Yoav and Wannamethee, S Goya and Strachan, Mark WJ and Kumari, Meena and Whittaker, John C and Drenos, Fotios and Kivimaki, Mika and Hingorani, Aroon D and Price, Jacqueline F and Humphries, Steve E (2015) Sixty-Five Common Genetic Variants and Prediction of Type 2 Diabetes. Diabetes, 64 (5). pp. 1830-1840. DOI https://doi.org/10.2337/db14-1504

Tandon, K and Schalkwyk, L and Patel, M and Kinirons, M and Kerwin, R and McGuffin, P and Aitchison, KJ (2002) An amino acid substitution (IIe109Val) in CYP2D6. In: UNSPECIFIED, ? - ?.

Tandon, K and Schalkwyk, LC and Checkley, S and Patel, M and Kinirons, M and Kerwin, RW and McGuffin, P and Aitchison, KJ (2002) CYP2D6 genotype and treatment with tricyclic antidepressants. In: X World Congress of Psychiatric Genetics, 2002-10-09 - 2002-10-13, Brussels, Belgium.

Taylor, Gillian CA and Eskeland, Ragnhild and Hekimoglu-Balkan, Betül and Pradeepa, Madapura M and Bickmore, Wendy A (2013) H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction. Genome Research, 23 (12). pp. 2053-2065. DOI https://doi.org/10.1101/gr.155028.113

Teif, VB and Erdel, F and Beshnova, DA and Vainshtein, Y and Mallm, JP and Rippe, K (2013) Taking into account nucleosomes for predicting gene expression. Methods, 62 (1). pp. 26-38. DOI https://doi.org/10.1016/j.ymeth.2013.03.011

Teif, VB and Rippe, K (2010) Statistical-mechanical lattice models for protein-DNA binding in chromatin. Journal of Physics: Condensed Matter, 22 (41). p. 414105. DOI https://doi.org/10.1088/0953-8984/22/41/414105

Teif, VB and Shkrabkou, AV and Egorova, VP and Krot, VI (2012) Nucleosomes in gene regulation: Theoretical approaches. Molecular Biology, 46 (1). pp. 1-10. DOI https://doi.org/10.1134/S002689331106015X

Teif, Vladimir B and Mallm, Jan-Philipp and Sharma, Tanvi and Mark Welch, David B and Rippe, Karsten and Eils, Roland and Langowski, Jörg and Olins, Ada L and Olins, Donald E (2017) Nucleosome repositioning during differentiation of a human myeloid leukemia cell line. Nucleus, 8 (2). pp. 188-204. DOI https://doi.org/10.1080/19491034.2017.1295201

Torruella, G and Derelle, R and Paps, J and Lang, BF and Roger, AJ and Shalchian-Tabrizi, K and Ruiz-Trillo, I (2012) Phylogenetic Relationships within the Opisthokonta Based on Phylogenomic Analyses of Conserved Single-Copy Protein Domains. Molecular Biology and Evolution, 29 (2). pp. 531-544. DOI https://doi.org/10.1093/molbev/msr185

Toye, Ayo A and Schalkwyk, Leonard and Lehrach, Hans and Bumstead, Nat (1997) A yeast artificial chromosome (YAC) library containing 10 haploid chicken genome equivalents. Mammalian Genome, 8 (4). pp. 274-276. DOI https://doi.org/10.1007/s003359900408

Tropf, Felix C and Lee, S Hong and Verweij, Renske M and Stulp, Gert and van der Most, Peter J and de Vlaming, Ronald and Bakshi, Andrew and Briley, Daniel A and Rahal, Charles and Hellpap, Robert and Iliadou, Anastasia N and Esko, Tõnu and Metspalu, Andres and Medland, Sarah E and Martin, Nicholas G and Barban, Nicola and Snieder, Harold and Robinson, Matthew R and Mills, Melinda C (2017) Hidden heritability due to heterogeneity across seven populations. Nature Human Behaviour, 1 (10). pp. 757-765. DOI https://doi.org/10.1038/s41562-017-0195-1

Tsai, Isheng J and Zarowiecki, Magdalena and Holroyd, Nancy and Garciarrubio, Alejandro and Sanchez-Flores, Alejandro and Brooks, Karen L and Tracey, Alan and Bobes, Raúl J and Fragoso, Gladis and Sciutto, Edda and Aslett, Martin and Beasley, Helen and Bennett, Hayley M and Cai, Jianping and Camicia, Federico and Clark, Richard and Cucher, Marcela and De Silva, Nishadi and Day, Tim A and Deplazes, Peter and Estrada, Karel and Fernández, Cecilia and Holland, Peter WH and Hou, Junling and Hu, Songnian and Huckvale, Thomas and Hung, Stacy S and Kamenetzky, Laura and Keane, Jacqueline A and Kiss, Ferenc and Koziol, Uriel and Lambert, Olivia and Liu, Kan and Luo, Xuenong and Luo, Yingfeng and Macchiaroli, Natalia and Nichol, Sarah and Paps, Jordi and Parkinson, John and Pouchkina-Stantcheva, Natasha and Riddiford, Nick and Rosenzvit, Mara and Salinas, Gustavo and Wasmuth, James D and Zamanian, Mostafa and Zheng, Yadong and Cai, Xuepeng and Soberón, Xavier and Olson, Peter D and Laclette, Juan P and Brehm, Klaus and Berriman, Matthew (2013) The genomes of four tapeworm species reveal adaptations to parasitism. Nature, 496 (7443). pp. 57-63. DOI https://doi.org/10.1038/nature12031

U

Upton, GJG and Sanchez-Graillet, O and Rowsell, J and Arteaga-Salas, JM and Graham, NS and Stalteri, MA and Memon, FN and May, ST and Harrison, AP (2009) On the causes of outliers in Affymetrix GeneChip data. Briefings in Functional Genomics and Proteomics, 8 (3). pp. 199-212. DOI https://doi.org/10.1093/bfgp/elp027

Upton, Graham JG and Harrison, Andrew P (2010) The Detection of Blur in Affymetrix GeneChips. Statistical Applications in Genetics and Molecular Biology, 9 (1). Article37-. DOI https://doi.org/10.2202/1544-6115.1590

Upton, Graham JG and Langdon, William B and Harrison, Andrew P (2008) G-spots cause incorrect expression measurement in Affymetrix microarrays. BMC Genomics, 9 (1). 613-. DOI https://doi.org/10.1186/1471-2164-9-613

V

Vainshtein, Yevhen and Rippe, Karsten and Teif, Vladimir B (2017) NucTools: analysis of chromatin feature occupancy profiles from high-throughput sequencing data. BMC Genomics, 18 (1). 158-. DOI https://doi.org/10.1186/s12864-017-3580-2

Viana, J and Hannon, E and Dempster, E and Pidsley, R and Macdonald, R and Knox, O and Spiers, H and Troakes, C and Al-Saraj, S and Turecki, G and Schalkwyk, LC and Mill, J (2017) Schizophrenia-associated methylomic variation: molecular signatures of disease and polygenic risk burden across multiple brain regions. Human Molecular Genetics, 26 (1). pp. 210-225. DOI https://doi.org/10.1093/hmg/ddw373

Viana, Joana and Pidsley, Ruth and Troakes, Claire and Spiers, Helen and Wong, Chloe CY and Al-Sarraj, Safa and Craig, Ian and Schalkwyk, Leonard and Mill, Jonathan (2014) Epigenomic and transcriptomic signatures of a Klinefelter syndrome (47,XXY) karyotype in the brain. Epigenetics, 9 (4). pp. 587-599. DOI https://doi.org/10.4161/epi.27806

Voong, CP and Spencer, PS and Navarrete, CV and Turner, D and Hayrabedyan, SB and Crummy, P and Holloway, E and Wilson, MT and Smith, PR and Fernández, N (2017) HLA-DR genotyping and mitochondrial DNA analysis reveal the presence of family burials in a fourth century Romano-British Christian cemetery. Frontiers in Genetics, 8 (DEC). 182-. DOI https://doi.org/10.3389/fgene.2017.00182

W

Wagner, W and Kronberger, N and Allum, N and de Cheveigné, S and Diego, C and Gaskell, G and Heinßen, M and Midden, C and Odegaard, M and Olsson, S and Rizzo, B and Rusannen, T and Stathopoulou, A (2002) Pandora’s Genes-Images of Biotechnology and Nature in Europe. In: Biotechnology - the Making of a Global Controversy. Cambridge University Press. ISBN 978-0521774390. Official URL: https://www.researchgate.net/publication/254809439...

Wheeler, Eleanor and Leong, Aaron and Liu, Ching-Ti and Hivert, Marie-France and Strawbridge, Rona J and Podmore, Clara and Li, Man and Yao, Jie and Sim, Xueling and Hong, Jaeyoung and Chu, Audrey Y and Zhang, Weihua and Wang, Xu and Chen, Peng and Maruthur, Nisa M and Porneala, Bianca C and Sharp, Stephen J and Jia, Yucheng and Kabagambe, Edmond K and Chang, Li-Ching and Chen, Wei-Min and Elks, Cathy E and Evans, Daniel S and Fan, Qiao and Giulianini, Franco and Go, Min Jin and Hottenga, Jouke-Jan and Hu, Yao and Jackson, Anne U and Kanoni, Stavroula and Kim, Young Jin and Kleber, Marcus E and Ladenvall, Claes and Lecoeur, Cecile and Lim, Sing-Hui and Lu, Yingchang and Mahajan, Anubha and Marzi, Carola and Nalls, Mike A and Navarro, Pau and Nolte, Ilja M and Rose, Lynda M and Rybin, Denis V and Sanna, Serena and Shi, Yuan and Stram, Daniel O and Takeuchi, Fumihiko and Tan, Shu Pei and van der Most, Peter J and Van Vliet-Ostaptchouk, Jana V and Wong, Andrew and Yengo, Loic and Zhao, Wanting and Goel, Anuj and Martinez Larrad, Maria Teresa and Radke, Dörte and Salo, Perttu and Tanaka, Toshiko and van Iperen, Erik PA and Abecasis, Goncalo and Afaq, Saima and Alizadeh, Behrooz Z and Bertoni, Alain G and Bonnefond, Amelie and Böttcher, Yvonne and Bottinger, Erwin P and Campbell, Harry and Carlson, Olga D and Chen, Chien-Hsiun and Cho, Yoon Shin and Garvey, W Timothy and Gieger, Christian and Goodarzi, Mark O and Grallert, Harald and Hamsten, Anders and Hartman, Catharina A and Herder, Christian and Hsiung, Chao Agnes and Huang, Jie and Igase, Michiya and Isono, Masato and Katsuya, Tomohiro and Khor, Chiea-Chuen and Kiess, Wieland and Kohara, Katsuhiko and Kovacs, Peter and Lee, Juyoung and Lee, Wen-Jane and Lehne, Benjamin and Li, Huaixing and Liu, Jianjun and Lobbens, Stephane and Luan, Jian'an and Lyssenko, Valeriya and Meitinger, Thomas and Miki, Tetsuro and Miljkovic, Iva and Moon, Sanghoon and Mulas, Antonella and Müller, Gabriele and Müller-Nurasyid, Martina and Nagaraja, Ramaiah and Nauck, Matthias and Pankow, James S and Polasek, Ozren and Prokopenko, Inga and Ramos, Paula S and Rasmussen-Torvik, Laura and Rathmann, Wolfgang and Rich, Stephen S and Robertson, Neil R and Roden, Michael and Roussel, Ronan and Rudan, Igor and Scott, Robert A and Scott, William R and Sennblad, Bengt and Siscovick, David S and Strauch, Konstantin and Sun, Liang and Swertz, Morris and Tajuddin, Salman M and Taylor, Kent D and Teo, Yik-Ying and Tham, Yih Chung and Tönjes, Anke and Wareham, Nicholas J and Willemsen, Gonneke and Wilsgaard, Tom and Hingorani, Aroon D and Egan, Josephine and Ferrucci, Luigi and Hovingh, G Kees and Jula, Antti and Kivimaki, Mika and Kumari, Meena and Njølstad, Inger and Palmer, Colin NA and Serrano Ríos, Manuel and Stumvoll, Michael and Watkins, Hugh and Aung, Tin and Blüher, Matthias and Boehnke, Michael and Boomsma, Dorret I and Bornstein, Stefan R and Chambers, John C and Chasman, Daniel I and Chen, Yii-Der Ida and Chen, Yduan-Tsong and Cheng, Ching-Yu and Cucca, Francesco and de Geus, Eco JC and Deloukas, Panos and Evans, Michele K and Fornage, Myriam and Friedlander, Yechiel and Froguel, Philippe and Groop, Leif and Gross, Myron D and Harris, Tamara B and Hayward, Caroline and Heng, Chew-Kiat and Ingelsson, Erik and Kato, Norihiro and Kim, Bong-Jo and Koh, Woon-Puay and Kooner, Jaspal S and Körner, Antje and Kuh, Diana and Kuusisto, Johanna and Laakso, Markku and Lin, Xu and Liu, Yongmei and Loos, Ruth JF and Magnusson, Patrik KE and März, Winfried and McCarthy, Mark I and Oldehinkel, Albertine J and Ong, Ken K and Pedersen, Nancy L and Pereira, Mark A and Peters, Annette and Ridker, Paul M and Sabanayagam, Charumathi and Sale, Michele and Saleheen, Danish and Saltevo, Juha and Schwarz, Peter EH and Sheu, Wayne HH and Snieder, Harold and Spector, Timothy D and Tabara, Yasuharu and Tuomilehto, Jaakko and van Dam, Rob M and Wilson, James G and Wilson, James F and Wolffenbuttel, Bruce HR and Wong, Tien Yin and Wu, Jer-Yuarn and Yuan, Jian-Min and Zonderman, Alan B and Soranzo, Nicole and Guo, Xiuqing and Roberts, David J and Florez, Jose C and Sladek, Robert and Dupuis, Josée and Morris, Andrew P and Tai, E-Shyong and Selvin, Elizabeth and Rotter, Jerome I and Langenberg, Claudia and Barroso, Inês and Meigs, James B (2017) Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis. PLoS Medicine, 14 (9). e1002383-e1002383. DOI https://doi.org/10.1371/journal.pmed.1002383

Wiehle, Laura and Thorn, Graeme and Raddatz, Günter and Clarkson, Christopher and Rippe, Karsten and Lyko, Frank and Breiling, Achim and Teif, Vladimir (2019) DNA (de)methylation in embryonic stem cells controls CTCF-dependent chromatin boundaries. Genome Research, 29 (5). pp. 750-761. DOI https://doi.org/10.1101/gr.239707.118

Wong, CCY and Meaburn, EL and Ronald, A and Price, TS and Jeffries, AR and Schalkwyk, LC and Plomin, R and Mill, J (2014) Methylomic analysis of monozygotic twins discordant for autism spectrum disorder and related behavioural traits. Molecular Psychiatry, 19 (4). pp. 495-503. DOI https://doi.org/10.1038/mp.2013.41

Wood, Andrew R and Esko, Tonu and Yang, Jian and Vedantam, Sailaja and Pers, Tune H and Gustafsson, Stefan and Chu, Audrey Y and Estrada, Karol and Luan, Jian'an and Kutalik, Zoltán and Amin, Najaf and Buchkovich, Martin L and Croteau-Chonka, Damien C and Day, Felix R and Duan, Yanan and Fall, Tove and Fehrmann, Rudolf and Ferreira, Teresa and Jackson, Anne U and Karjalainen, Juha and Lo, Ken Sin and Locke, Adam E and Mägi, Reedik and Mihailov, Evelin and Porcu, Eleonora and Randall, Joshua C and Scherag, André and Vinkhuyzen, Anna AE and Westra, Harm-Jan and Winkler, Thomas W and Workalemahu, Tsegaselassie and Zhao, Jing Hua and Absher, Devin and Albrecht, Eva and Anderson, Denise and Baron, Jeffrey and Beekman, Marian and Demirkan, Ayse and Ehret, Georg B and Feenstra, Bjarke and Feitosa, Mary F and Fischer, Krista and Fraser, Ross M and Goel, Anuj and Gong, Jian and Justice, Anne E and Kanoni, Stavroula and Kleber, Marcus E and Kristiansson, Kati and Lim, Unhee and Lotay, Vaneet and Lui, Julian C and Mangino, Massimo and Leach, Irene Mateo and Medina-Gomez, Carolina and Nalls, Michael A and Nyholt, Dale R and Palmer, Cameron D and Pasko, Dorota and Pechlivanis, Sonali and Prokopenko, Inga and Ried, Janina S and Ripke, Stephan and Shungin, Dmitry and Stancáková, Alena and Strawbridge, Rona J and Sung, Yun Ju and Tanaka, Toshiko and Teumer, Alexander and Trompet, Stella and van der Laan, Sander W and van Setten, Jessica and Van Vliet-Ostaptchouk, Jana V and Wang, Zhaoming and Yengo, Loïc and Zhang, Weihua and Afzal, Uzma and Ärnlöv, Johan and Arscott, Gillian M and Bandinelli, Stefania and Barrett, Amy and Bellis, Claire and Bennett, Amanda J and Berne, Christian and Blüher, Matthias and Bolton, Jennifer L and Böttcher, Yvonne and Boyd, Heather A and Bruinenberg, Marcel and Buckley, Brendan M and Buyske, Steven and Caspersen, Ida H and Chines, Peter S and Clarke, Robert and Claudi-Boehm, Simone and Cooper, Matthew and Daw, E Warwick and De Jong, Pim A and Deelen, Joris and Delgado, Graciela and Denny, Josh C and Dhonukshe-Rutten, Rosalie and Dimitriou, Maria and Doney, Alex SF and Dörr, Marcus and Eklund, Niina and Eury, Elodie and Folkersen, Lasse and Garcia, Melissa E and Geller, Frank and Giedraitis, Vilmantas and Go, Alan S and Grallert, Harald and Grammer, Tanja B and Gräßler, Jürgen and Grönberg, Henrik and de Groot, Lisette CPGM and Groves, Christopher J and Haessler, Jeffrey and Hall, Per and Haller, Toomas and Hallmans, Goran and Hannemann, Anke and Hartman, Catharina A and Hassinen, Maija and Hayward, Caroline and Heard-Costa, Nancy L and Helmer, Quinta and Hemani, Gibran and Henders, Anjali K and Hillege, Hans L and Hlatky, Mark A and Hoffmann, Wolfgang and Hoffmann, Per and Holmen, Oddgeir and Houwing-Duistermaat, Jeanine J and Illig, Thomas and Isaacs, Aaron and James, Alan L and Jeff, Janina and Johansen, Berit and Johansson, Åsa and Jolley, Jennifer and Juliusdottir, Thorhildur and Junttila, Juhani and Kho, Abel N and Kinnunen, Leena and Klopp, Norman and Kocher, Thomas and Kratzer, Wolfgang and Lichtner, Peter and Lind, Lars and Lindström, Jaana and Lobbens, Stéphane and Lorentzon, Mattias and Lu, Yingchang and Lyssenko, Valeriya and Magnusson, Patrik KE and Mahajan, Anubha and Maillard, Marc and McArdle, Wendy L and McKenzie, Colin A and McLachlan, Stela and McLaren, Paul J and Menni, Cristina and Merger, Sigrun and Milani, Lili and Moayyeri, Alireza and Monda, Keri L and Morken, Mario A and Müller, Gabriele and Müller-Nurasyid, Martina and Musk, Arthur W and Narisu, Narisu and Nauck, Matthias and Nolte, Ilja M and Nöthen, Markus M and Oozageer, Laticia and Pilz, Stefan and Rayner, Nigel W and Renstrom, Frida and Robertson, Neil R and Rose, Lynda M and Roussel, Ronan and Sanna, Serena and Scharnagl, Hubert and Scholtens, Salome and Schumacher, Fredrick R and Schunkert, Heribert and Scott, Robert A and Sehmi, Joban and Seufferlein, Thomas and Shi, Jianxin and Silventoinen, Karri and Smit, Johannes H and Smith, Albert Vernon and Smolonska, Joanna and Stanton, Alice V and Stirrups, Kathleen and Stott, David J and Stringham, Heather M and Sundström, Johan and Swertz, Morris A and Syvänen, Ann-Christine and Tayo, Bamidele O and Thorleifsson, Gudmar and Tyrer, Jonathan P and van Dijk, Suzanne and van Schoor, Natasja M and van der Velde, Nathalie and van Heemst, Diana and van Oort, Floor VA and Vermeulen, Sita H and Verweij, Niek and Vonk, Judith M and Waite, Lindsay L and Waldenberger, Melanie and Wennauer, Roman and Wilkens, Lynne R and Willenborg, Christina and Wilsgaard, Tom and Wojczynski, Mary K and Wong, Andrew and Wright, Alan F and Zhang, Qunyuan and Arveiler, Dominique and Bakker, Stephan JL and Beilby, John and Bergman, Richard N and Bergmann, Sven and Biffar, Reiner and Blangero, John and Boomsma, Dorret I and Bornstein, Stefan R and Bovet, Pascal and Brambilla, Paolo and Brown, Morris J and Campbell, Harry and Caulfield, Mark J and Chakravarti, Aravinda and Collins, Rory and Collins, Francis S and Crawford, Dana C and Cupples, L Adrienne and Danesh, John and de Faire, Ulf and den Ruijter, Hester M and Erbel, Raimund and Erdmann, Jeanette and Eriksson, Johan G and Farrall, Martin and Ferrannini, Ele and Ferrières, Jean and Ford, Ian and Forouhi, Nita G and Forrester, Terrence and Gansevoort, Ron T and Gejman, Pablo V and Gieger, Christian and Golay, Alain and Gottesman, Omri and Gudnason, Vilmundur and Gyllensten, Ulf and Haas, David W and Hall, Alistair S and Harris, Tamara B and Hattersley, Andrew T and Heath, Andrew C and Hengstenberg, Christian and Hicks, Andrew A and Hindorff, Lucia A and Hingorani, Aroon D and Hofman, Albert and Hovingh, G Kees and Humphries, Steve E and Hunt, Steven C and Hypponen, Elina and Jacobs, Kevin B and Jarvelin, Marjo-Riitta and Jousilahti, Pekka and Jula, Antti M and Kaprio, Jaakko and Kastelein, John JP and Kayser, Manfred and Kee, Frank and Keinanen-Kiukaanniemi, Sirkka M and Kiemeney, Lambertus A and Kooner, Jaspal S and Kooperberg, Charles and Koskinen, Seppo and Kovacs, Peter and Kraja, Aldi T and Kumari, Meena and Kuusisto, Johanna and Lakka, Timo A and Langenberg, Claudia and Le Marchand, Loic and Lehtimäki, Terho and Lupoli, Sara and Madden, Pamela AF and Männistö, Satu and Manunta, Paolo and Marette, André and Matise, Tara C and McKnight, Barbara and Meitinger, Thomas and Moll, Frans L and Montgomery, Grant W and Morris, Andrew D and Morris, Andrew P and Murray, Jeffrey C and Nelis, Mari and Ohlsson, Claes and Oldehinkel, Albertine J and Ong, Ken K and Ouwehand, Willem H and Pasterkamp, Gerard and Peters, Annette and Pramstaller, Peter P and Price, Jackie F and Qi, Lu and Raitakari, Olli T and Rankinen, Tuomo and Rao, DC and Rice, Treva K and Ritchie, Marylyn and Rudan, Igor and Salomaa, Veikko and Samani, Nilesh J and Saramies, Jouko and Sarzynski, Mark A and Schwarz, Peter EH and Sebert, Sylvain and Sever, Peter and Shuldiner, Alan R and Sinisalo, Juha and Steinthorsdottir, Valgerdur and Stolk, Ronald P and Tardif, Jean-Claude and Tönjes, Anke and Tremblay, Angelo and Tremoli, Elena and Virtamo, Jarmo and Vohl, Marie-Claude and Amouyel, Philippe and Asselbergs, Folkert W and Assimes, Themistocles L and Bochud, Murielle and Boehm, Bernhard O and Boerwinkle, Eric and Bottinger, Erwin P and Bouchard, Claude and Cauchi, Stéphane and Chambers, John C and Chanock, Stephen J and Cooper, Richard S and de Bakker, Paul IW and Dedoussis, George and Ferrucci, Luigi and Franks, Paul W and Froguel, Philippe and Groop, Leif C and Haiman, Christopher A and Hamsten, Anders and Hayes, M Geoffrey and Hui, Jennie and Hunter, David J and Hveem, Kristian and Jukema, J Wouter and Kaplan, Robert C and Kivimaki, Mika and Kuh, Diana and Laakso, Markku and Liu, Yongmei and Martin, Nicholas G and März, Winfried and Melbye, Mads and Moebus, Susanne and Munroe, Patricia B and Njølstad, Inger and Oostra, Ben A and Palmer, Colin NA and Pedersen, Nancy L and Perola, Markus and Pérusse, Louis and Peters, Ulrike and Powell, Joseph E and Power, Chris and Quertermous, Thomas and Rauramaa, Rainer and Reinmaa, Eva and Ridker, Paul M and Rivadeneira, Fernando and Rotter, Jerome I and Saaristo, Timo E and Saleheen, Danish and Schlessinger, David and Slagboom, P Eline and Snieder, Harold and Spector, Tim D and Strauch, Konstantin and Stumvoll, Michael and Tuomilehto, Jaakko and Uusitupa, Matti and van der Harst, Pim and Völzke, Henry and Walker, Mark and Wareham, Nicholas J and Watkins, Hugh and Wichmann, H-Erich and Wilson, James F and Zanen, Pieter and Deloukas, Panos and Heid, Iris M and Lindgren, Cecilia M and Mohlke, Karen L and Speliotes, Elizabeth K and Thorsteinsdottir, Unnur and Barroso, Inês and Fox, Caroline S and North, Kari E and Strachan, David P and Beckmann, Jacques S and Berndt, Sonja I and Boehnke, Michael and Borecki, Ingrid B and McCarthy, Mark I and Metspalu, Andres and Stefansson, Kari and Uitterlinden, André G and van Duijn, Cornelia M and Franke, Lude and Willer, Cristen J and Price, Alkes L and Lettre, Guillaume and Loos, Ruth JF and Weedon, Michael N and Ingelsson, Erik and O'Connell, Jeffrey R and Abecasis, Goncalo R and Chasman, Daniel I and Goddard, Michael E and Visscher, Peter M and Hirschhorn, Joel N and Frayling, Timothy M (2014) Defining the role of common variation in the genomic and biological architecture of adult human height. Nature Genetics, 46 (11). pp. 1173-1186. DOI https://doi.org/10.1038/ng.3097

Woolley, Michael J and Watkins, Harriet A and Taddese, Bruck and Karakullukcu, Z Gamze and Barwell, James and Smith, Kevin J and Hay, Debbie L and Poyner, David R and Reynolds, Christopher A and Conner, Alex C (2013) The role of ECL2 in CGRP receptor activation: a combined modelling and experimental approach. Journal of The Royal Society Interface, 10 (88). p. 20130589. DOI https://doi.org/10.1098/rsif.2013.0589

Z

Zabet, NR and Hone, ANW and Chu, DF (2010) Design principles of transcriptional logic circuits. In: UNSPECIFIED, ? - ?.

Zabet, Nicolae Radu (2011) Negative feedback and physical limits of genes. Journal of Theoretical Biology, 284 (1). pp. 82-91. DOI https://doi.org/10.1016/j.jtbi.2011.06.021

Zabet, Nicolae Radu (2012) System size reduction in stochastic simulations of the facilitated diffusion mechanism. BMC Systems Biology, 6 (1). p. 121. DOI https://doi.org/10.1186/1752-0509-6-121

Zabet, Nicolae Radu and Adryan, Boris (2012) Computational models for large-scale simulations of facilitated diffusion. Molecular BioSystems, 8 (11). p. 2815. DOI https://doi.org/10.1039/c2mb25201e

Zabet, Nicolae Radu and Adryan, Boris (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Research, 43 (1). pp. 84-94. DOI https://doi.org/10.1093/nar/gku1269

Zabet, Nicolae Radu and Adryan, Boris (2012) GRiP: a computational tool to simulate transcription factor binding in prokaryotes. Bioinformatics, 28 (9). pp. 1287-1289. DOI https://doi.org/10.1093/bioinformatics/bts132

Zabet, Nicolae Radu and Adryan, Boris (2012) A comprehensive computational model of facilitated diffusion in prokaryotes. Bioinformatics, 28 (11). pp. 1517-1524. DOI https://doi.org/10.1093/bioinformatics/bts178

Zabet, Nicolae Radu and Adryan, Boris (2013) The effects of transcription factor competition on gene regulation. Frontiers in Genetics, 4 (OCT). 197-. DOI https://doi.org/10.3389/fgene.2013.00197

Zabet, Nicolae Radu and Catoni, Marco and Prischi, Filippo and Paszkowski, Jerzy (2017) Cytosine methylation at CpCpG sites triggers accumulation of non-CpG methylation in gene bodies. Nucleic Acids Research, 45 (7). gkw1330-gkw1330. DOI https://doi.org/10.1093/nar/gkw1330

Zabet, Nicolae Radu and Chu, Dominique F (2010) Computational limits to binary genes. Journal of The Royal Society Interface, 7 (47). pp. 945-954. DOI https://doi.org/10.1098/rsif.2009.0474

Zabet, Nicolae Radu and Chu, Dominique F (2010) Stochasticity and Robustness in Bi-Stable Systems. In: 2010 4th International Conference on Bioinformatics and Biomedical Engineering (iCBBE), 2010-06-18 - 2010-06-20.

Zabet, Nicolae Radu and Foy, Robert and Adryan, Boris (2013) The Influence of Transcription Factor Competition on the Relationship between Occupancy and Affinity. PLoS ONE, 8 (9). e73714-e73714. DOI https://doi.org/10.1371/journal.pone.0073714

Zastapilo, Jakub (2022) Gene expression variation and buffering mechanisms in Arabidopsis thaliana. Masters thesis, University of Essex.

Zhang, Guofan and Fang, Xiaodong and Guo, Ximing and Li, Li and Luo, Ruibang and Xu, Fei and Yang, Pengcheng and Zhang, Linlin and Wang, Xiaotong and Qi, Haigang and Xiong, Zhiqiang and Que, Huayong and Xie, Yinlong and Holland, Peter WH and Paps, Jordi and Zhu, Yabing and Wu, Fucun and Chen, Yuanxin and Wang, Jiafeng and Peng, Chunfang and Meng, Jie and Yang, Lan and Liu, Jun and Wen, Bo and Zhang, Na and Huang, Zhiyong and Zhu, Qihui and Feng, Yue and Mount, Andrew and Hedgecock, Dennis and Xu, Zhe and Liu, Yunjie and Domazet-Lošo, Tomislav and Du, Yishuai and Sun, Xiaoqing and Zhang, Shoudu and Liu, Binghang and Cheng, Peizhou and Jiang, Xuanting and Li, Juan and Fan, Dingding and Wang, Wei and Fu, Wenjing and Wang, Tong and Wang, Bo and Zhang, Jibiao and Peng, Zhiyu and Li, Yingxiang and Li, Na and Wang, Jinpeng and Chen, Maoshan and He, Yan and Tan, Fengji and Song, Xiaorui and Zheng, Qiumei and Huang, Ronglian and Yang, Hailong and Du, Xuedi and Chen, Li and Yang, Mei and Gaffney, Patrick M and Wang, Shan and Luo, Longhai and She, Zhicai and Ming, Yao and Huang, Wen and Zhang, Shu and Huang, Baoyu and Zhang, Yong and Qu, Tao and Ni, Peixiang and Miao, Guoying and Wang, Junyi and Wang, Qiang and Steinberg, Christian EW and Wang, Haiyan and Li, Ning and Qian, Lumin and Zhang, Guojie and Li, Yingrui and Yang, Huanming and Liu, Xiao and Wang, Jian and Yin, Ye and Wang, Jun (2012) The oyster genome reveals stress adaptation and complexity of shell formation. Nature, 490 (7418). pp. 49-54. DOI https://doi.org/10.1038/nature11413

Zhu, Baoli and Smith, Judith A and Tracey, Simon M and Konfortov, Bernard A and Welzel, Katrin and Schalkwyk, Leonard C and Lehrach, Hans and Kollers, Sonja and Masabanda, Julio and Buitkamp, Johannes and Fries, Ruedi and Williams, John L and Miller, J Ross (1999) A 5× genome coverage bovine BAC library: production, characterization, and distribution. Mammalian Genome, 10 (7). pp. 706-709. DOI https://doi.org/10.1007/s003359901075