Items where Subject is "Q Science > QH Natural history > QH426 Genetics"

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A.Jones, Karen and M.Black, Donald and A.Brown, Melissa and L.Griffiths, Beatrice and M.Nicolai, Hans and A.Chambers, Julie and Bonjardim, Marisa and Xu, Chun-Fang and Boyd, Marie and MeFariane, Robert and Korn, Bernhard and Poustka, Annemarie and A.North, Michael and Schalkwyk, Leo and Lehrach, Hans and Solomon, Ellen (1994) The detailed characterisation of a 400 kb cosmid walk in the <i>BRCA1</i> region: identification and localisation of 10 genes including a dual-specificity phosphatase. Human Molecular Genetics, 3 (11). pp. 1927-1934. DOI https://doi.org/10.1093/hmg/3.11.1927

Abdel-Majid, Raja M and Leong, Wey L and Schalkwyk, Leonard C and Smallman, Donald S and Wong, Scott T and Storm, Daniel R and Fine, Alan and Dobson, Melanie J and Guernsey, Duane L and Neumann, Paul E (1998) Loss of adenylyl cyclase I activity disrupts patterning of mouse somatosensory cortex. Nature Genetics, 19 (3). pp. 289-291. DOI https://doi.org/10.1038/980

Abiola, O and Angel, JM and Avner, P and Bachmanov, AA and Belknap, JK and Bennett, B and Blankenhorn, EP and Blizard, DA and Bolivar, V and Brockmann, GA and Buck, KJ and Bureau, JF and Casley, WL and Chesler, EJ and Cheverud, JM and Churchill, GA and Cook, M and Crabbe, JC and Crusio, WE and Darvasi, A and de Haan, G and Demant, P and Doerge, RW and Elliott, RW and Farber, CR and Flaherty, L and Flint, J and Gershenfeld, H and Gibson, JP and Gu, J and Gu, W and Himmelbauer, H and Hitzemann, R and Hsu, HC and Hunter, K and Iraqi, FA and Jansen, RC and Johnson, TE and Jones, BC and Kempermann, G and Lammert, F and Lu, L and Manly, KF and Matthews, DB and Medrano, JF and Mehrabian, M and Mittleman, G and Mock, BA and Mogil, JS and Montagutelli, X and Morahan, G and Mountz, JD and Nagase, H and Nowakowski, RS and O'Hara, BF and Osadchuk, AV and Paigen, B and Palmer, AA and Peirce, JL and Pomp, D and Rosemann, M and Rosen, GD and Schalkwyk, LC and Seltzer, Z and Settle, S and Shimomura, K and Shou, S and Sikela, JM and Siracusa, LD and Spearow, JL and Teuscher, C and Threadgill, DW and Toth, LA and Toye, AA and Vadasz, C and Van Zant, G and Wakeland, E and Williams, RW and Zhang, HG and Zou, F (2003) The nature and identification of quantitative trait loci: a community's view. Nature Reviews Genetics, 4 (11). pp. 911-916. DOI https://doi.org/10.1038/nrg1206

Arking, Dan E and Pulit, Sara L and Crotti, Lia and van der Harst, Pim and Munroe, Patricia B and Koopmann, Tamara T and Sotoodehnia, Nona and Rossin, Elizabeth J and Morley, Michael and Wang, Xinchen and Johnson, Andrew D and Lundby, Alicia and Gudbjartsson, Daníel F and Noseworthy, Peter A and Eijgelsheim, Mark and Bradford, Yuki and Tarasov, Kirill V and Dörr, Marcus and Müller-Nurasyid, Martina and Lahtinen, Annukka M and Nolte, Ilja M and Smith, Albert Vernon and Bis, Joshua C and Isaacs, Aaron and Newhouse, Stephen J and Evans, Daniel S and Post, Wendy S and Waggott, Daryl and Lyytikäinen, Leo-Pekka and Hicks, Andrew A and Eisele, Lewin and Ellinghaus, David and Hayward, Caroline and Navarro, Pau and Ulivi, Sheila and Tanaka, Toshiko and Tester, David J and Chatel, Stéphanie and Gustafsson, Stefan and Kumari, Meena and Morris, Richard W and Naluai, Åsa T and Padmanabhan, Sandosh and Kluttig, Alexander and Strohmer, Bernhard and Panayiotou, Andrie G and Torres, Maria and Knoflach, Michael and Hubacek, Jaroslav A and Slowikowski, Kamil and Raychaudhuri, Soumya and Kumar, Runjun D and Harris, Tamara B and Launer, Lenore J and Shuldiner, Alan R and Alonso, Alvaro and Bader, Joel S and Ehret, Georg and Huang, Hailiang and Kao, WH Linda and Strait, James B and Macfarlane, Peter W and Brown, Morris and Caulfield, Mark J and Samani, Nilesh J and Kronenberg, Florian and Willeit, Johann and Smith, J Gustav and Greiser, Karin H and Meyer zu Schwabedissen, Henriette and Werdan, Karl and Carella, Massimo and Zelante, Leopoldo and Heckbert, Susan R and Psaty, Bruce M and Rotter, Jerome I and Kolcic, Ivana and Polašek, Ozren and Wright, Alan F and Griffin, Maura and Daly, Mark J and Arnar, David O and Hólm, Hilma and Thorsteinsdottir, Unnur and Denny, Joshua C and Roden, Dan M and Zuvich, Rebecca L and Emilsson, Valur and Plump, Andrew S and Larson, Martin G and O'Donnell, Christopher J and Yin, Xiaoyan and Bobbo, Marco and D'Adamo, Adamo P and Iorio, Annamaria and Sinagra, Gianfranco and Carracedo, Angel and Cummings, Steven R and Nalls, Michael A and Jula, Antti and Kontula, Kimmo K and Marjamaa, Annukka and Oikarinen, Lasse and Perola, Markus and Porthan, Kimmo and Erbel, Raimund and Hoffmann, Per and Jöckel, Karl-Heinz and Kälsch, Hagen and Nöthen, Markus M and den Hoed, Marcel and Loos, Ruth JF and Thelle, Dag S and Gieger, Christian and Meitinger, Thomas and Perz, Siegfried and Peters, Annette and Prucha, Hanna and Sinner, Moritz F and Waldenberger, Melanie and de Boer, Rudolf A and Franke, Lude and van der Vleuten, Pieter A and Beckmann, Britt Maria and Martens, Eimo and Bardai, Abdennasser and Hofman, Nynke and Wilde, Arthur AM and Behr, Elijah R and Dalageorgou, Chrysoula and Giudicessi, John R and Medeiros-Domingo, Argelia and Barc, Julien and Kyndt, Florence and Probst, Vincent and Ghidoni, Alice and Insolia, Roberto and Hamilton, Robert M and Scherer, Stephen W and Brandimarto, Jeffrey and Margulies, Kenneth and Moravec, Christine E and Greco M, Fabiola del and Fuchsberger, Christian and O'Connell, Jeffrey R and Lee, Wai K and Watt, Graham CM and Campbell, Harry and Wild, Sarah H and El Mokhtari, Nour E and Frey, Norbert and Asselbergs, Folkert W and Leach, Irene Mateo and Navis, Gerjan and van den Berg, Maarten P and van Veldhuisen, Dirk J and Kellis, Manolis and Krijthe, Bouwe P and Franco, Oscar H and Hofman, Albert and Kors, Jan A and Uitterlinden, André G and Witteman, Jacqueline CM and Kedenko, Lyudmyla and Lamina, Claudia and Oostra, Ben A and Abecasis, Gonçalo R and Lakatta, Edward G and Mulas, Antonella and Orrú, Marco and Schlessinger, David and Uda, Manuela and Markus, Marcello RP and Völker, Uwe and Snieder, Harold and Spector, Timothy D and Ärnlöv, Johan and Lind, Lars and Sundström, Johan and Syvänen, Ann-Christine and Kivimaki, Mika and Kähönen, Mika and Mononen, Nina and Raitakari, Olli T and Viikari, Jorma S and Adamkova, Vera and Kiechl, Stefan and Brion, Maria and Nicolaides, Andrew N and Paulweber, Bernhard and Haerting, Johannes and Dominiczak, Anna F and Nyberg, Fredrik and Whincup, Peter H and Hingorani, Aroon D and Schott, Jean-Jacques and Bezzina, Connie R and Ingelsson, Erik and Ferrucci, Luigi and Gasparini, Paolo and Wilson, James F and Rudan, Igor and Franke, Andre and Mühleisen, Thomas W and Pramstaller, Peter P and Lehtimäki, Terho J and Paterson, Andrew D and Parsa, Afshin and Liu, Yongmei and van Duijn, Cornelia M and Siscovick, David S and Gudnason, Vilmundur and Jamshidi, Yalda and Salomaa, Veikko and Felix, Stephan B and Sanna, Serena and Ritchie, Marylyn D and Stricker, Bruno H and Stefansson, Kari and Boyer, Laurie A and Cappola, Thomas P and Olsen, Jesper V and Lage, Kasper and Schwartz, Peter J and Kääb, Stefan and Chakravarti, Aravinda and Ackerman, Michael J and Pfeufer, Arne and de Bakker, Paul IW and Newton-Cheh, Christopher (2014) Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization. Nature Genetics, 46 (8). pp. 826-836. DOI https://doi.org/10.1038/ng.3014

Arteaga-Salas, JM and Zuzan, H and Langdon, WB and Upton, GJG and Harrison, AP (2008) An overview of image-processing methods for Affymetrix GeneChips. Briefings in Bioinformatics, 9 (1). pp. 25-33. DOI https://doi.org/10.1093/bib/bbm055

B. Teif, Vladimir and G. Cherstvy, Andrey (2016) Chromatin and epigenetics: current biophysical views. AIMS Biophysics, 3 (1). pp. 88-98. DOI https://doi.org/10.3934/biophy.2016.1.88

Baguñà, J and Ruiz-Trillo, I and Paps, J and Loukota, M and Ribera, C and Jondelius, U and Riutort, M (2001) The first bilaterian organisms: Simple or complex? New molecular evidence. International Journal of Developmental Biology, 45 (SUPPL.). S133-S134.

Baguñà, Jaume and Martinez, Pere and Paps, Jordi and Riutort, Marta (2008) Back in time: a new systematic proposal for the Bilateria. Philosophical Transactions of the Royal Society B: Biological Sciences, 363 (1496). pp. 1481-1491. DOI https://doi.org/10.1098/rstb.2007.2238

Bai, Youhuang and Dai, Xiaozhuan and Harrison, Andrew and Johnston, Caroline and Chen, Ming (2016) Toward a next-generation atlas of RNA secondary structure. Briefings in Bioinformatics, 17 (1). pp. 63-77. DOI https://doi.org/10.1093/bib/bbv026

Barban, Nicola and Jansen, Rick and de Vlaming, Ronald and Vaez, Ahmad and Mandemakers, Jornt J and Tropf, Felix C and Shen, Xia and Wilson, James F and Chasman, Daniel I and Nolte, Ilja M and Tragante, Vinicius and van der Laan, Sander W and Perry, John RB and Kong, Augustine and Ahluwalia, Tarunveer S and Albrecht, Eva and Yerges-Armstrong, Laura and Atzmon, Gil and Auro, Kirsi and Ayers, Kristin and Bakshi, Andrew and Ben-Avraham, Danny and Berger, Klaus and Bergman, Aviv and Bertram, Lars and Bielak, Lawrence F and Bjornsdottir, Gyda and Bonder, Marc Jan and Broer, Linda and Bui, Minh and Barbieri, Caterina and Cavadino, Alana and Chavarro, Jorge E and Turman, Constance and Concas, Maria Pina and Cordell, Heather J and Davies, Gail and Eibich, Peter and Eriksson, Nicholas and Esko, Tõnu and Eriksson, Joel and Falahi, Fahimeh and Felix, Janine F and Fontana, Mark Alan and Franke, Lude and Gandin, Ilaria and Gaskins, Audrey J and Gieger, Christian and Gunderson, Erica P and Guo, Xiuqing and Hayward, Caroline and He, Chunyan and Hofer, Edith and Huang, Hongyan and Joshi, Peter K and Kanoni, Stavroula and Karlsson, Robert and Kiechl, Stefan and Kifley, Annette and Kluttig, Alexander and Kraft, Peter and Lagou, Vasiliki and Lecoeur, Cecile and Lahti, Jari and Li-Gao, Ruifang and Lind, Penelope A and Liu, Tian and Makalic, Enes and Mamasoula, Crysovalanto and Matteson, Lindsay and Mbarek, Hamdi and McArdle, Patrick F and McMahon, George and Meddens, S Fleur W and Mihailov, Evelin and Miller, Mike and Missmer, Stacey A and Monnereau, Claire and van der Most, Peter J and Myhre, Ronny and Nalls, Mike A and Nutile, Teresa and Kalafati, Ioanna Panagiota and Porcu, Eleonora and Prokopenko, Inga and Rajan, Kumar B and Rich-Edwards, Janet and Rietveld, Cornelius A and Robino, Antonietta and Rose, Lynda M and Rueedi, Rico and Ryan, Kathleen A and Saba, Yasaman and Schmidt, Daniel and Smith, Jennifer A and Stolk, Lisette and Streeten, Elizabeth and Tönjes, Anke and Thorleifsson, Gudmar and Ulivi, Sheila and Wedenoja, Juho and Wellmann, Juergen and Willeit, Peter and Yao, Jie and Yengo, Loic and Zhao, Jing Hua and Zhao, Wei and Zhernakova, Daria V and Amin, Najaf and Andrews, Howard and Balkau, Beverley and Barzilai, Nir and Bergmann, Sven and Biino, Ginevra and Bisgaard, Hans and Bønnelykke, Klaus and Boomsma, Dorret I and Buring, Julie E and Campbell, Harry and Cappellani, Stefania and Ciullo, Marina and Cox, Simon R and Cucca, Francesco and Toniolo, Daniela and Davey-Smith, George and Deary, Ian J and Dedoussis, George and Deloukas, Panos and van Duijn, Cornelia M and de Geus, Eco JC and Eriksson, Johan G and Evans, Denis A and Faul, Jessica D and Sala, Cinzia Felicita and Froguel, Philippe and Gasparini, Paolo and Girotto, Giorgia and Grabe, Hans-Jörgen and Greiser, Karin Halina and Groenen, Patrick JF and de Haan, Hugoline G and Haerting, Johannes and Harris, Tamara B and Heath, Andrew C and Heikkilä, Kauko and Hofman, Albert and Homuth, Georg and Holliday, Elizabeth G and Hopper, John and Hyppönen, Elina and Jacobsson, Bo and Jaddoe, Vincent WV and Johannesson, Magnus and Jugessur, Astanand and Kähönen, Mika and Kajantie, Eero and Kardia, Sharon LR and Keavney, Bernard and Kolcic, Ivana and Koponen, Päivikki and Kovacs, Peter and Kronenberg, Florian and Kutalik, Zoltan and La Bianca, Martina and Lachance, Genevieve and Iacono, William G and Lai, Sandra and Lehtimäki, Terho and Liewald, David C and Lindgren, Cecilia M and Liu, Yongmei and Luben, Robert and Lucht, Michael and Luoto, Riitta and Magnus, Per and Magnusson, Patrik KE and Martin, Nicholas G and McGue, Matt and McQuillan, Ruth and Medland, Sarah E and Meisinger, Christa and Mellström, Dan and Metspalu, Andres and Traglia, Michela and Milani, Lili and Mitchell, Paul and Montgomery, Grant W and Mook-Kanamori, Dennis and de Mutsert, Renée and Nohr, Ellen A and Ohlsson, Claes and Olsen, Jørn and Ong, Ken K and Paternoster, Lavinia and Pattie, Alison and Penninx, Brenda WJH and Perola, Markus and Peyser, Patricia A and Pirastu, Mario and Polasek, Ozren and Power, Chris and Kaprio, Jaakko and Raffel, Leslie J and Räikkönen, Katri and Raitakari, Olli and Ridker, Paul M and Ring, Susan M and Roll, Kathryn and Rudan, Igor and Ruggiero, Daniela and Rujescu, Dan and Salomaa, Veikko and Schlessinger, David and Schmidt, Helena and Schmidt, Reinhold and Schupf, Nicole and Smit, Johannes and Sorice, Rossella and Spector, Tim D and Starr, John M and Stöckl, Doris and Strauch, Konstantin and Stumvoll, Michael and Swertz, Morris A and Thorsteinsdottir, Unnur and Thurik, A Roy and Timpson, Nicholas J and Tung, Joyce Y and Uitterlinden, André G and Vaccargiu, Simona and Viikari, Jorma and Vitart, Veronique and Völzke, Henry and Vollenweider, Peter and Vuckovic, Dragana and Waage, Johannes and Wagner, Gert G and Wang, Jie Jin and Wareham, Nicholas J and Weir, David R and Willemsen, Gonneke and Willeit, Johann and Wright, Alan F and Zondervan, Krina T and Stefansson, Kari and Krueger, Robert F and Lee, James J and Benjamin, Daniel J and Cesarini, David and Koellinger, Philipp D and den Hoed, Marcel and Snieder, Harold and Mills, Melinda C (2016) Genome-wide analysis identifies 12 loci influencing human reproductive behavior. Nature Genetics, 48 (12). pp. 1462-1472. DOI https://doi.org/10.1038/ng.3698

Baselmans, Bart ML and Jansen, Rick and Ip, Hill F and van Dongen, Jenny and Abdellaoui, Abdel and van de Weijer, Margot P and Bao, Yanchun and Smart, Melissa and Kumari, Meena and Willemsen, Gonneke and Hottenga, Jouke-Jan and Boomsma, Dorret I and de Geus, Eco JC and Nivard, Michel G and Bartels, Meike (2019) Multivariate genome-wide analyses of the well-being spectrum. Nature Genetics, 51 (3). pp. 445-451. DOI https://doi.org/10.1038/s41588-018-0320-8

Beaney, Katherine E and Cooper, Jackie A and McLachlan, Stela and Wannamethee, S Goya and Jefferis, Barbara J and Whincup, Peter and Ben-Shlomo, Yoav and Price, Jacqueline F and Kumari, Meena and Wong, Andrew and Ong, Ken and Hardy, Rebecca and Kuh, Diana and Kivimaki, Mika and Kangas, Antti J and Soininen, Pasi and Ala-Korpela, Mika and Drenos, Fotios and Humphries, Steve E (2016) Variant rs10911021 that associates with coronary heart disease in type 2 diabetes, is associated with lower concentrations of circulating HDL cholesterol and large HDL particles but not with amino acids. Cardiovascular Diabetology, 15 (1). 115-. DOI https://doi.org/10.1186/s12933-016-0435-0

Bechtold, Ulrike and Albihlal, Waleed S and Lawson, Tracy and Fryer, Michael J and Sparrow, Penelope AC and Richard, François and Persad, Ramona and Bowden, Laura and Hickman, Richard and Martin, Cathie and Beynon, Jim L and Buchanan-Wollaston, Vicky and Baker, Neil R and Morison, James IL and Schöffl, Friedrich and Ott, Sascha and Mullineaux, Philip M (2013) Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection. Journal of Experimental Botany, 64 (11). pp. 3467-3481. DOI https://doi.org/10.1093/jxb/ert185

Bell, JT and Loomis, AK and Butcher, LM and Gao, F and Zhang, B and Hyde, CL and Sun, J and Wu, H and Ward, K and Harris, J and Scollen, S and Davies, MN and Schalkwyk, LC and Mill, J and Williams, FMK and Li, N and Deloukas, P and Beck, S and McMahon, SB and Wang, J and John, SL and Spector, TD (2014) Differential methylation of the TRPA1 promoter in pain sensitivity. Nature Communications, 5 (1). 2978-. DOI https://doi.org/10.1038/ncomms3978

Ben Abdelkhalek, Hanaa and Beckers, Anja and Schuster-Gossler, Karin and Pavlova, Maria N and Burkhardt, Hannelore and Lickert, Heiko and Rossant, Janet and Reinhardt, Richard and Schalkwyk, Leonard C and Müller, Ines and Herrmann, Bernhard G and Ceolin, Marcelo and Rivera-Pomar, Rolando and Gossler, Achim (2004) The mouse homeobox gene <i>Not</i> is required for caudal notochord development and affected by the truncate mutation. Genes &amp; Development, 18 (14). pp. 1725-1736. DOI https://doi.org/10.1101/gad.303504

Binder, Elke and Malki, Karim and Paya-Cano, Jose L and Fernandes, Cathy and Aitchison, Katherine J and Mathé, Aleksander A and Sluyter, Frans and Schalkwyk, Leonard C (2011) Antidepressants and the resilience to early-life stress in inbred mouse strains. Pharmacogenetics and Genomics, 21 (12). pp. 779-789. DOI https://doi.org/10.1097/fpc.0b013e32834b3f35

Blair, Jessica MA and Bavro, Vassiliy N and Ricci, Vito and Modi, Niraj and Cacciotto, Pierpaolo and Kleinekathӧfer, Ulrich and Ruggerone, Paolo and Vargiu, Attilio V and Baylay, Alison J and Smith, Helen E and Brandon, Yvonne and Galloway, David and Piddock, Laura JV (2015) AcrB drug-binding pocket substitution confers clinically relevant resistance and altered substrate specificity. Proceedings of the National Academy of Sciences, 112 (11). pp. 3511-3516. DOI https://doi.org/10.1073/pnas.1419939112

Boks, Marco P and Mierlo, Hans C van and Rutten, Bart PF and Radstake, Timothy RDJ and De Witte, Lot and Geuze, Elbert and Horvath, Steve and Schalkwyk, Leonard C and Vinkers, Christiaan H and Broen, Jasper CA and Vermetten, Eric (2015) Longitudinal changes of telomere length and epigenetic age related to traumatic stress and post-traumatic stress disorder. Psychoneuroendocrinology, 51. pp. 506-512. DOI https://doi.org/10.1016/j.psyneuen.2014.07.011

Bottani, S and Zabet, NR and Wendel, JF and Veitia, RA (2018) Gene expression dominance in allopolyploids: hypotheses and models. Trends in Plant Science, 23 (5). pp. 393-402. DOI https://doi.org/10.1016/j.tplants.2018.01.002

Breen, M and Deakin, L and Macdonald, B and Miller, S and Sibson, R and Tarttelin, E and Avner, P and Bourgade, F and Guenet, JL and Montagutelli, X and Poirier, C and Simon, D and Tailor, D and Bishop, M and Kelly, M and Rysavy, F and Rastan, S and Norris, D and Shepherd, D and Abbott, C and Pilz, A and Hodge, S and Jackson, I and Boyd, Y and Blair, H and Maslen, G and Todd, JA and Reed, PW and Stoye, J and Ashworth, A and McCarthy, L and Cox, R and Schalkwyk, LC and Lehrach, H and Klose, J and Gangadharan, U and Brown, S (1994) Towards high resolution maps of the mouse and human genomes?a facility for ordering markers to 0.1 cM resolution. Human Molecular Genetics, 3 (4). pp. 621-627. DOI https://doi.org/10.1093/hmg/3.4.621

Breen, M and Deakln, L and Macdonald, B and Miller, S and Sibson, R and Tarttelln, E and Avner, P and Bourgade, F and Guenet, JL and Montagutelli, X and Polrier, C and Simon, D and Tailor, D and Bishop, M and Kelly, M and Rysavy, F and Rastan, S and Norris, D and Shepherd, D and Abbott, C and Pllz, A and Hodge, S and Jackson, I and Boyd, Y and Blair, H and Maslen, G and A.todd, J and W.reed, P and Stoye, J and Ashworth, A and Mccarthy, L and Cox, R and Schalkwyk, L and Lehrach, H and Klose, J and Gangadharan, U and Brown, S (1994) Towards high resolution maps of the mouse and human genomes - a facility for ordering markers to 0.1 cm resolution. Human Molecular Genetics, 3 (4). 621 - 627. DOI https://doi.org/10.1093/hmg/3.4.621

Buitkamp, J and Ewald, D and Schalkwyk, L and Weiher, M and Masabanda, J and Sazanov, A and Lehrach, H and Fries, R (1998) Construction and characterisation of a gridded chicken cosmid library with four‐fold genomic coverage. Animal Genetics, 29 (4). pp. 295-301. DOI https://doi.org/10.1046/j.1365-2052.1998.00331.x

Butcher, LM and Meaburn, E and Dale, PS and Sham, P and Schalkwyk, LC and Craig, IW and Plomin, R (2005) Association analysis of mild mental impairment using DNA pooling to screen 432 brain-expressed single-nucleotide polymorphisms. Molecular Psychiatry, 10 (4). pp. 384-392. DOI https://doi.org/10.1038/sj.mp.4001589

Butcher, Lee M and Meaburn, Emma and Knight, Jo and Sham, Pak C and Schalkwyk, Leonard C and Craig, Ian W and Plomin, Robert (2005) SNPs, microarrays and pooled DNA: identification of four loci associated with mild mental impairment in a sample of 6000 children. Human Molecular Genetics, 14 (10). pp. 1315-1325. DOI https://doi.org/10.1093/hmg/ddi142

Cai, Li and Schalkwyk, Leonard C and Schoeberlein-Stehli, Andreina and Zee, Robert YL and Smith, Avrial and Haaf, Thomas and Georges, Michel and Lehrach, Hans and Lindpaintner, Klaus (1997) Construction and Characterization of a 10-Genome Equivalent Yeast Artificial Chromosome Library for the Laboratory Rat,Rattus norvegicus. Genomics, 39 (3). pp. 385-392. DOI https://doi.org/10.1006/geno.1996.4494

Caspi, Avshalom and Williams, Benjamin and Kim-Cohen, Julia and Craig, Ian W and Milne, Barry J and Poulton, Richie and Schalkwyk, Leonard C and Taylor, Alan and Werts, Helen and Moffitt, Terrie E (2007) Moderation of breastfeeding effects on the IQ by genetic variation in fatty acid metabolism. Proceedings of the National Academy of Sciences, 104 (47). pp. 18860-18865. DOI https://doi.org/10.1073/pnas.0704292104

Catoni, M and Tsang, JMF and Greco, AP and Zabet, NR (2018) DMRcaller: a versatile R/Bioconductor package for detection and visualization of differentially methylated regions in CpG and non-CpG contexts. Nucleic Acids Research, 46 (19). e114-. DOI https://doi.org/10.1093/nar/gky602

Catoni, Marco and Griffiths, Jayne and Becker, Claude and Zabet, Nicolae Radu and Bayon, Carlos and Dapp, Mélanie and Lieberman‐Lazarovich, Michal and Weigel, Detlef and Paszkowski, Jerzy (2017) <scp>DNA</scp> sequence properties that predict susceptibility to epiallelic switching. The EMBO Journal, 36 (5). pp. 617-628. DOI https://doi.org/10.15252/embj.201695602

Charlebois, Robert L and Hofman, Jason D and Schalkwyk, Leonard C and Lam, Wan L and Doolittle, W Ford (1989) Genome mapping in halobacteria. Canadian Journal of Microbiology, 35 (1). pp. 21-29. DOI https://doi.org/10.1139/m89-004

Charlebois, Robert L and Schalkwyk, Leonard C and Hofman, Jason D and Doolittle, W Ford (1991) Detailed physical map and set of overlapping clones covering the genome of the archaebacterium Haloferax volcanii DS2. Journal of Molecular Biology, 222 (3). pp. 509-524. DOI https://doi.org/10.1016/0022-2836(91)90493-p

Chen, Dijun and Fu, Liang-Yu and Zhang, Zhao and Li, Guoliang and Zhang, Hang and Jiang, Li and Harrison, Andrew P and Shanahan, Hugh P and Klukas, Christian and Zhang, Hong-Yu and Ruan, Yijun and Chen, Ling-Ling and Chen, Ming (2014) Dissecting the chromatin interactome of microRNA genes. Nucleic Acids Research, 42 (5). pp. 3028-3043. DOI https://doi.org/10.1093/nar/gkt1294

Chu, Dominique and Zabet, Nicolae Radu and Mitavskiy, Boris (2009) Models of transcription factor binding: Sensitivity of activation functions to model assumptions. Journal of Theoretical Biology, 257 (3). pp. 419-429. DOI https://doi.org/10.1016/j.jtbi.2008.11.026

Chu, Dominique F and Zabet, Nicolae Radu and Hone, Andrew NW (2011) Optimal parameter settings for information processing in gene regulatory networks. Biosystems, 104 (2-3). pp. 99-108. DOI https://doi.org/10.1016/j.biosystems.2011.01.006

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Cline, SW and Schalkwyk, LC and Doolittle, WF (1989) Transformation of the archaebacterium Halobacterium volcanii with genomic DNA. Journal of Bacteriology, 171 (9). pp. 4987-4991. DOI https://doi.org/10.1128/jb.171.9.4987-4991.1989

Cline, Steven W and Lam, Wan L and Charlebois, Robert L and Schalkwyk, Leonard C and Doolittle, W Ford (1989) Transformation methods for halophilic archaebacteria. Canadian Journal of Microbiology, 35 (1). pp. 148-152. DOI https://doi.org/10.1139/m89-022

Cohen, A and Lam, WL and Charlebois, RL and Doolittle, WF and Schalkwyk, LC (1992) Localizing genes on the map of the genome of Haloferax volcanii, one of the Archaea. Proceedings of the National Academy of Sciences, 89 (5). pp. 1602-1606. DOI https://doi.org/10.1073/pnas.89.5.1602

Condliffe, Daniel and Wong, Andrew and Troakes, Claire and Proitsi, Petroula and Patel, Yogen and Chouliaras, Leonidas and Fernandes, Cathy and Cooper, Jonathan and Lovestone, Simon and Schalkwyk, Leonard and Mill, Jonathan and Lunnon, Katie (2014) Cross-region reduction in 5-hydroxymethylcytosine in Alzheimer's disease brain. Neurobiology of Aging, 35 (8). pp. 1850-1854. DOI https://doi.org/10.1016/j.neurobiolaging.2014.02.002

Corpas, Manuel and Valdivia-Granda, Willy and Torres, Nazareth and Greshake, Bastian and Coletta, Alain and Knaus, Alexej and Harrison, Andrew P and Cariaso, Mike and Moran, Federico and Nielsen, Fiona and Swan, Daniel and Weiss Solís, David Y and Krawitz, Peter and Schacherer, Frank and Schols, Peter and Yang, Huangming and Borry, Pascal and Glusman, Gustavo and Robinson, Peter N (2015) Crowdsourced direct-to-consumer genomic analysis of a family quartet. BMC Genomics, 16 (1). 910-. DOI https://doi.org/10.1186/s12864-015-1973-7

Craig, Ian W and Mill, Jonathan and Craig, Gavin M and Loat, Caroline and Schalkwyk, Leonard C (2004) Application of microarrays to the analysis of the inactivation status of human X-linked genes expressed in lymphocytes. European Journal of Human Genetics, 12 (8). pp. 639-646. DOI https://doi.org/10.1038/sj.ejhg.5201212

Crnogorac-Jurcevic, T and Brown, JR and Lehrach, H and Schalkwyk, LC (1997) Tetraodon fluviatilis,a New Puffer Fish Model for Genome Studies. Genomics, 41 (2). pp. 177-184. DOI https://doi.org/10.1006/geno.1997.4646

Crombie, AT and Emery, H and McGenity, TJ and Murrell, JC (2017) Draft Genome Sequences of Three Terrestrial Isoprene-Degrading Rhodococcus Strains. Genome Announcements, 5 (45). e01256-e01217. DOI https://doi.org/10.1128/genomeA.01256-17

D'Souza, U and Sugden, K and Aitchison, KJ and Schalkwyk, LC and McGuffin, P and Pariante, M (2006) S.16.02 Depression: the GENDEP study. European Neuropsychopharmacology, 16. S187-S187. DOI https://doi.org/10.1016/s0924-977x(06)70079-7

Davies, MN and Meaburn, EL and Schalkwyk, LC (2010) Gene set enrichment; a problem of pathways. Briefings in Functional Genomics, 9 (5-6). pp. 385-390. DOI https://doi.org/10.1093/bfgp/elq021

Davies, MN and Volta, M and Pidsley, R and Lunnon, K and Dixit, A and Lovestone, S and Coarfa, C and Harris, RA and Milosavljevic, A and Troakes, C and Al-Sarraj, S and Dobson, R and Schalkwyk, LC and Mill, J (2012) Functional annotation of the human brain methylome identifies tissue-specific epigenetic variation across brain and blood. Genome Biology, 13 (6). R43-. DOI https://doi.org/10.1186/gb-2012-13-6-r43

Davis, OSP and Band, G and Pirinen, M and Haworth, CMA and Meaburn, EL and Kovas, Y and Harlaar, N and Docherty, SJ and Hanscombe, KB and Trzaskowski, M and Curtis, CJC and Strange, A and Freeman, C and Bellenguez, C and Su, Z and Pearson, R and Vukcevic, D and Langford, C and Deloukas, P and Hunt, S and Gray, E and Dronov, S and Potter, SC and Tashakkori-Ghanbaria, A and Edkins, S and Bumpstead, SJ and Blackwell, JM and Bramon, E and Brown, MA and Casas, JP and Corvin, A and Duncanson, A and Jankowski, JAZ and Markus, HS and Mathew, CG and Palmer, CNA and Rautanen, A and Sawcer, SJ and Trembath, RC and Viswanathan, AC and Wood, NW and Barroso, I and Peltonen, L and Dale, PS and Petrill, SA and Schalkwyk, LC and Craig, IW and Lewis, CM and Price, TS and Donnelly, P and Plomin, R and Spencer, CCA (2014) The correlation between reading and mathematics ability at age twelve has a substantial genetic component. Nature Communications, 5 (1). creators-Schalkwyk=3ALeonard_C=3A=3A. DOI https://doi.org/10.1038/ncomms5204

Davis, Oliver SP and Butcher, Lee M and Docherty, Sophia J and Meaburn, Emma L and Curtis, Charles JC and Simpson, Michael A and Schalkwyk, Leonard C and Plomin, Robert (2010) A Three-Stage Genome-Wide Association Study of General Cognitive Ability: Hunting the Small Effects. Behavior Genetics, 40 (6). pp. 759-767. DOI https://doi.org/10.1007/s10519-010-9350-4

Davis, Oliver SP and Plomin, Robert and Schalkwyk, Leonard C (2009) The SNPMaP package for R: a framework for genome-wide association using DNA pooling on microarrays. Bioinformatics, 25 (2). pp. 281-283. DOI https://doi.org/10.1093/bioinformatics/btn587

De Jager, Philip L and Srivastava, Gyan and Lunnon, Katie and Burgess, Jeremy and Schalkwyk, Leonard C and Yu, Lei and Eaton, Matthew L and Keenan, Brendan T and Ernst, Jason and McCabe, Cristin and Tang, Anna and Raj, Towfique and Replogle, Joseph and Brodeur, Wendy and Gabriel, Stacey and Chai, High S and Younkin, Curtis and Younkin, Steven G and Zou, Fanggeng and Szyf, Moshe and Epstein, Charles B and Schneider, Julie A and Bernstein, Bradley E and Meissner, Alex and Ertekin-Taner, Nilufer and Chibnik, Lori B and Kellis, Manolis and Mill, Jonathan and Bennett, David A (2014) Alzheimer's disease: early alterations in brain DNA methylation at ANK1, BIN1, RHBDF2 and other loci. Nature Neuroscience, 17 (9). pp. 1156-1163. DOI https://doi.org/10.1038/nn.3786

Dempster, Emma L and Pidsley, Ruth and Schalkwyk, Leonard C and Owens, Sheena and Georgiades, Anna and Kane, Fergus and Kalidindi, Sridevi and Picchioni, Marco and Kravariti, Eugenia and Toulopoulou, Timothea and Murray, Robin M and Mill, Jonathan (2011) Disease-associated epigenetic changes in monozygotic twins discordant for schizophrenia and bipolar disorder. Human Molecular Genetics, 20 (24). pp. 4786-4796. DOI https://doi.org/10.1093/hmg/ddr416

Docherty, SJ and Butcher, LM and Schalkwyk, LC and Plomin, R (2007) Applicability of DNA pools on 500 KSNP microarrays for cost-effective initial screens in genomewide association studies. BMC Genomics, 8 (1). p. 214. DOI https://doi.org/10.1186/1471-2164-8-214

Docherty, SJ and Davis, OSP and Kovas, Y and Meaburn, EL and Dale, PS and Petrill, SA and Schalkwyk, LC and Plomin, R (2010) A genome‐wide association study identifies multiple loci associated with mathematics ability and disability. Genes, Brain and Behavior, 9 (2). pp. 234-247. DOI https://doi.org/10.1111/j.1601-183x.2009.00553.x

Doolittle, WF and Lam, WL and Schalkwyk, LC and Charlebois, RL and Cline, SW and Cohen, A (1992) Progress in developing the genetics of the halobacteria. Biochemical Society symposium, 58 (58). pp. 73-78.

El Khoury, Louis and Ribbans, William J and Raleigh, Stuart M (2016) MMP3 and TIMP2 gene variants as predisposing factors for Achilles tendon pathologies: Attempted replication study in a British case–control cohort. Meta Gene, 9. pp. 52-55. DOI https://doi.org/10.1016/j.mgene.2016.03.007

Erezyilmaz, Deniz F and Hayward, Alex and Huang, Yan and Paps, Jordi and Acs, Zoltan and Delgado, Juan A and Collantes, Francisco and Kathirithamby, Jeyaraney (2014) Expression of the Pupal Determinant broad during Metamorphic and Neotenic Development of the Strepsipteran Xenos vesparum Rossi. PLoS ONE, 9 (4). e93614-e93614. DOI https://doi.org/10.1371/journal.pone.0093614

Ezer, Daphne and Zabet, Nicolae Radu and Adryan, Boris (2014) Homotypic clusters of transcription factor binding sites: A model system for understanding the physical mechanics of gene expression. Computational and Structural Biotechnology Journal, 10 (17). pp. 63-69. DOI https://doi.org/10.1016/j.csbj.2014.07.005

Ezer, Daphne and Zabet, Nicolae Radu and Adryan, Boris (2014) Physical constraints determine the logic of bacterial promoter architectures. Nucleic Acids Research, 42 (7). pp. 4196-4207. DOI https://doi.org/10.1093/nar/gku078

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Ferdous, Moshina M and Bao, Yanchun and Vinciotti, Veronica and Liu, Xiaohui and Wilson, Paul (2018) Predicting gene expression from genome wide protein binding profiles. Neurocomputing, 275. pp. 1490-1499. DOI https://doi.org/10.1016/j.neucom.2017.09.094

Fernandes, C and Hoyle, E and Dempster, E and Schalkwyk, LC and Collier, DA (2006) Performance deficit of α7 nicotinic receptor knockout mice in a delayed matching‐to‐place task suggests a mild impairment of working/episodic‐like memory. Genes, Brain and Behavior, 5 (6). pp. 433-440. DOI https://doi.org/10.1111/j.1601-183x.2005.00176.x

Fernandes, Cathy and Liu, Lin and Paya-Cano, Jos L and Gregorov�, So A and Forejt, Ji and Schalkwyk, Leonard C (2004) Behavioral Characterization of Wild Derived Male Mice (Mus musculus musculus) of the PWD/Ph Inbred Strain: High Exploration Compared to C57BL/6J. Behavior Genetics, 34 (6). pp. 621-630. DOI https://doi.org/10.1007/s10519-004-5589-y

Fernandes, Cathy and Paya‐Cano, Jose L and Sluyter, Frans and D'Souza, Ursula and Plomin, Robert and Schalkwyk, Leonard C (2004) Hippocampal gene expression profiling across eight mouse inbred strains: towards understanding the molecular basis for behaviour. European Journal of Neuroscience, 19 (9). pp. 2576-2582. DOI https://doi.org/10.1111/j.0953-816x.2004.03358.x

Finer, S and Iqbal, MS and Lowe, R and Ogunkolade, BW and Pervin, S and Mathews, C and Smart, M and Alam, DS and Hitman, GA (2016) Is famine exposure during developmental life in rural Bangladesh associated with a metabolic and epigenetic signature in young adulthood? A historical cohort study. BMJ Open, 6 (11). e011768-e011768. DOI https://doi.org/10.1136/bmjopen-2016-011768

Galsworthy, Michael J and Paya-Cano, Jose L and Liu, Lin and Monleón, Santiago and Gregoryan, Gregory and Fernandes, Cathy and Schalkwyk, Leonard C and Plomin, Robert (2005) Assessing Reliability, Heritability and General Cognitive Ability in a Battery of Cognitive Tasks for Laboratory Mice. Behavior Genetics, 35 (5). pp. 675-692. DOI https://doi.org/10.1007/s10519-005-3423-9

Garfield, Victoria and Fatemifar, Ghazaleh and Dale, Caroline and Smart, Melissa and Bao, Yanchun and Llewellyn, Clare H and Steptoe, Andrew and Zabaneh, Delilah and Kumari, Meena (2019) Assessing potential shared genetic aetiology between body mass index and sleep duration in 142,209 individuals. Genetic Epidemiology, 43 (2). pp. 207-214. DOI https://doi.org/10.1002/gepi.22174

González-Estévez, Cristina and Felix, Daniel A and Smith, Matthew D and Paps, Jordi and Morley, Simon J and James, Victoria and Sharp, Tyson V and Aboobaker, A Aziz (2012) SMG-1 and mTORC1 Act Antagonistically to Regulate Response to Injury and Growth in Planarians. PLoS Genetics, 8 (3). e1002619-e1002619. DOI https://doi.org/10.1371/journal.pgen.1002619

Gorrie-Stone, TJ and Smart, MC and Saffari, A and Malki, K and Hannon, E and Burrage, J and Mill, J and Kumari, M and Schalkwyk, LC (2019) Bigmelon: tools for analysing large DNA methylation datasets. Bioinformatics, 35 (6). pp. 981-986. DOI https://doi.org/10.1093/bioinformatics/bty713

Graff, Mario and Poli, Riccardo (2010) Practical performance models of algorithms in evolutionary program induction and other domains. Artificial Intelligence, 174 (15). pp. 1254-1276. DOI https://doi.org/10.1016/j.artint.2010.07.005

Gupta, Nikhil and Madapura, M Pradeepa and Bhat, U Anayat and Rao, MR Satyanarayana (2015) Mapping of Post-translational Modifications of Transition Proteins, TP1 and TP2, and Identification of Protein Arginine Methyltransferase 4 and Lysine Methyltransferase 7 as Methyltransferase for TP2. Journal of Biological Chemistry, 290 (19). pp. 12101-12122. DOI https://doi.org/10.1074/jbc.m114.620443

Gösele, Claudia and Hong, Liu and Kreitler, Thomas and Rossmann, Marlies and Hieke, Brigitte and Groß, Uwe and Kramer, Markus and Himmelbauer, Heinz and Bihoreau, Marie-Thérese and Kwitek-Black, Anne E and Twigger, Simon and Tonellato, Peter J and Jacob, Howard J and Schalkwyk, Leonard C and Lindpaintner, Klaus and Ganten, Detlev and Lehrach, Hans and Knoblauch, Margit (2000) High-Throughput Scanning of the Rat Genome Using Interspersed Repetitive Sequence-PCR Markers. Genomics, 69 (3). pp. 287-294. DOI https://doi.org/10.1006/geno.2000.6352

Hannon, Eilis and Dempster, Emma and Viana, Joana and Burrage, Joe and Smith, Adam R and Macdonald, Ruby and St Clair, David and Mustard, Colette and Breen, Gerome and Therman, Sebastian and Kaprio, Jaakko and Toulopoulou, Timothea and Pol, Hilleke E Hulshoff and Bohlken, Marc M and Kahn, Rene S and Nenadic, Igor and Hultman, Christina M and Murray, Robin M and Collier, David A and Bass, Nick and Gurling, Hugh and McQuillin, Andrew and Schalkwyk, Leonard and Mill, Jonathan (2016) An integrated genetic-epigenetic analysis of schizophrenia: evidence for co-localization of genetic associations and differential DNA methylation. Genome Biology, 17 (1). 176-. DOI https://doi.org/10.1186/s13059-016-1041-x

Hannon, Eilis and Lunnon, Katie and Schalkwyk, Leonard and Mill, Jonathan (2015) Interindividual methylomic variation across blood, cortex, and cerebellum: implications for epigenetic studies of neurological and neuropsychiatric phenotypes. Epigenetics, 10 (11). pp. 1024-1032. DOI https://doi.org/10.1080/15592294.2015.1100786

Hannon, Eilis and Marzi, Sarah J and Schalkwyk, Leonard S and Mill, Jonathan (2019) Genetic risk variants for brain disorders are enriched in cortical H3K27ac domains. Molecular Brain, 12 (1). 7-. DOI https://doi.org/10.1186/s13041-019-0429-4

Hannon, Eilis and Spiers, Helen and Viana, Joana and Pidsley, Ruth and Burrage, Joe and Murphy, Therese M and Troakes, Claire and Turecki, Gustavo and O'Donovan, Michael C and Schalkwyk, Leonard C and Bray, Nicholas J and Mill, Jonathan (2016) Methylation QTLs in the developing brain and their enrichment in schizophrenia risk loci. Nature Neuroscience, 19 (1). pp. 48-54. DOI https://doi.org/10.1038/nn.4182

Hannon, Ellis and Gorrie-Stone, Tyler J and Smart, Melissa C and Burrage, Joe and Hughes, Amanda and Bao, Yanchun and Kumari, Meena and Schalkwyk, Leonard C and Mill, Jonathan (2018) Leveraging DNA-Methylation Quantitative-Trait Loci to Characterize the Relationship between Methylomic Variation, Gene Expression, and Complex Traits. The American Journal of Human Genetics, 103 (5). pp. 654-665. DOI https://doi.org/10.1016/j.ajhg.2018.09.007

Harrison, Andrew P and Rowsell, Joanna and Camargo, Renata da Silva and Langdon, William B and Stalteri, Maria and Upton, Graham JG and Arteaga-Salas, Jose M (2008) The use of Affymetrix GeneChips as a tool for studying alternative forms of RNA. Biochemical Society Transactions, 36 (3). pp. 511-513. DOI https://doi.org/10.1042/bst0360511

Hills, David and Tracey, Simon and Masabanda, Julio and Fries, Ruedi and Schalkwyk, Leonard C and Lehrach, Hans and Miller, J Ross and Williams, John L (1999) A bovine YAC library containing four- to five-fold genome equivalents. Mammalian Genome, 10 (8). pp. 837-838. DOI https://doi.org/10.1007/s003359901100

Himmelbauer, Heinz and Wedemeyer, Niels and Haaf, Thomas and Wanker, Erich E and Schalkwyk, Leonard C and Lehrach, Hans (1998) IRS-PCR-based genetic mapping of the huntingtin interacting protein gene (HIP1) on mouse Chromosome 5. Mammalian Genome, 9 (1). pp. 26-31. DOI https://doi.org/10.1007/s003359900674

Hofman, Jason D and Schalkwyk, Leonard C and Doolittle, W Ford (1986) ISH51: a large, degenerate family of insertion sequence-like elements in the genome of the archaehacterium,<i>Halobacterium volcanii</i>. Nucleic Acids Research, 14 (17). pp. 6983-7000. DOI https://doi.org/10.1093/nar/14.17.6983

Hoheisel, J (1993) High resolution cosmid and P1 maps spanning the 14 Mb genome of the fission yeast S. pombe. Cell, 73 (1). pp. 109-120. DOI https://doi.org/10.1016/0092-8674(93)90164-l

Holland, Peter WH and Marlétaz, Ferdinand and Maeso, Ignacio and Dunwell, Thomas L and Paps, Jordi (2017) New genes from old: asymmetric divergence of gene duplicates and the evolution of development. Philosophical Transactions of the Royal Society B: Biological Sciences, 372 (1713). p. 20150480. DOI https://doi.org/10.1098/rstb.2015.0480

Hughes, Amanda and Smart, Melissa and Gorrie-Stone, Tyler and Hannon, Eilis and Mill, Jonathan and Bao, Yanchun and Burrage, Joe and Schalkwyk, Leo and Kumari, Meena (2018) Socioeconomic Position and DNA Methylation Age Acceleration across the Lifecourse. American Journal of Epidemiology, 187 (11). pp. 2346-2354. DOI https://doi.org/10.1093/aje/kwy155

Hunter, KW and Riba, L and Schalkwyk, L and Clark, M and Resenchuk, S and Beeghly, A and Su, J and Tinkov, F and Lee, P and Ramu, E and Lehrach, H and Housman, D (1996) Toward the construction of integrated physical and genetic maps of the mouse genome using interspersed repetitive sequence PCR (IRS-PCR) genomics. Genome Research, 6 (4). pp. 290-299. DOI https://doi.org/10.1101/gr.6.4.290

Illingworth, Robert S and Moffat, Michael and Mann, Abigail R and Read, David and Hunter, Chris J and Pradeepa, Madapura M and Adams, Ian R and Bickmore, Wendy A (2015) The E3 ubiquitin ligase activity of RING1B is not essential for early mouse development. Genes &amp; Development, 29 (18). pp. 1897-1902. DOI https://doi.org/10.1101/gad.268151.115

Ilott, NE and Schneider, T and Mill, J and Schalkwyk, LC and Brolese, G and Bizarro, L and Stolerman, IP and Dempster, E and Asherson, P (2014) Long-term effects of gestational nicotine exposure and food-restriction on gene expression in the striatum of adolescent rats. PloS One, 9 (2). creators-Schalkwyk=3ALeonard_C=3A=3A. DOI https://doi.org/10.1371/journal.pone.0088896

Janecka, M and Marzi, SJ and Parsons, MJ and Liu, L and Paya-Cano, JL and Smith, RG and Fernandes, C and Schalkwyk, LC (2017) Genetic polymorphisms and their association with brain and behavioural measures in heterogeneous stock mice. Scientific Reports, 7 (1). 41204-. DOI https://doi.org/10.1038/srep41204

Janecka, M and Mill, J and Basson, MA and Goriely, A and Spiers, H and Reichenberg, A and Schalkwyk, LC and Fernandes, C (2017) Advanced paternal age effects in neurodevelopmental disorders?review of potential underlying mechanisms. Translational Psychiatry, 7 (1). e1019-e1019. DOI https://doi.org/10.1038/tp.2016.294

Jeffries, Aaron R and Perfect, Leo W and Ledderose, Julia and Schalkwyk, Leonard C and Bray, Nicholas J and Mill, Jonathan and Price, Jack (2012) Stochastic Choice of Allelic Expression in Human Neural Stem Cells. Stem Cells, 30 (9). pp. 1938-1947. DOI https://doi.org/10.1002/stem.1155

Jimenez-Guri, Eva and Paps, Jordi and Garcia-Fernandez, Jordi and Salo, Emili (2006) Hox and ParaHox genes in Nemertodermatida, a basal bilaterian clade. The International Journal of Developmental Biology, 50 (8). pp. 675-679. DOI https://doi.org/10.1387/ijdb.062167ej

Karasawa, M and Zwacka, RM and Reuter, A and Fink, T and Hsieh, CL and Lichter, P and Francke, U and Welher, H (1993) The human homolog of the glomerulosclerosis gene Mpv17: structure and genomic organization. Human Molecular Genetics, 2 (11). pp. 1829-1834. DOI https://doi.org/10.1093/hmg/2.11.1829

Karlsson Linnér, Richard and Biroli, Pietro and Kong, Edward and Meddens, S Fleur W and Wedow, Robbee and Fontana, Mark Alan and Lebreton, Maël and Tino, Stephen P and Abdellaoui, Abdel and Hammerschlag, Anke R and Nivard, Michel G and Okbay, Aysu and Rietveld, Cornelius A and Timshel, Pascal N and Trzaskowski, Maciej and Vlaming, Ronald de and Zünd, Christian L and Bao, Yanchun and Buzdugan, Laura and Caplin, Ann H and Chen, Chia-Yen and Eibich, Peter and Fontanillas, Pierre and Gonzalez, Juan R and Joshi, Peter K and Karhunen, Ville and Kleinman, Aaron and Levin, Remy Z and Lill, Christina M and Meddens, Gerardus A and Muntané, Gerard and Sanchez-Roige, Sandra and Rooij, Frank J van and Taskesen, Erdogan and Wu, Yang and Zhang, Futao and Auton, Adam and Boardman, Jason D and Clark, David W and Conlin, Andrew and Dolan, Conor C and Fischbacher, Urs and Groenen, Patrick JF and Harris, Kathleen Mullan and Hasler, Gregor and Hofman, Albert and Ikram, Mohammad A and Jain, Sonia and Karlsson, Robert and Kessler, Ronald C and Kooyman, Maarten and MacKillop, James and Männikkö, Minna and Morcillo-Suarez, Carlos and McQueen, Matthew B and Schmidt, Klaus M and Smart, Melissa C and Sutter, Matthias and Thurik, A Roy and Uitterlinden, André G and White, Jon and Wit, Harriet de and Yang, Jian and Bertram, Lars and Boomsma, Dorret I and Esko, Tõnu and Fehr, Ernst and Hinds, David A and Johannesson, Magnus and Kumari, Meena and Laibson, David and Magnusson, Patrik KE and Meyer, Michelle N and Navarro, Arcadi and Palmer, Abraham A and Pers, Tune H and Posthuma, Danielle and Schunk, Daniel and Stein, Murray B and Svento, Rauli and Tiemeier, Henning and Timmers, Paul RHJ and Turley, Patrick and Ursano, Robert J and Wagner, Gert G and Wilson, James F and Gratten, Jacob and Lee, James J and Cesarini, David and Benjamin, Daniel J and Koellinger, Philipp D and Beauchamp, Jonathan P (2019) Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences. Nature Genomics, 51 (2). pp. 245-257. DOI https://doi.org/10.1038/s41588-018-0309-3

Kas, MJH and Fernandes, C and Schalkwyk, LC and Collier, DA (2007) Genetics of behavioural domains across the neuropsychiatric spectrum; of mice and men. Molecular Psychiatry, 12 (4). pp. 324-330. DOI https://doi.org/10.1038/sj.mp.4001979

Kas, MJH and Gelegen, C and Schalkwyk, LC and Collier, DA (2009) Interspecies Comparisons of Functional Genetic Variations and Their Implications in Neuropsychiatry. American Journal of Medical Genetics Part B-Neuropsychiatric Genetics, 150B (3). pp. 309-317. DOI https://doi.org/10.1002/ajmg.b.30815

Keers, R and Pedroso, I and Breen, G and Aitchison, KJ and Nolan, PM and Cichon, S and Nothen, MM and Rietschel, M and Schalkwyk, LC and Fernandes, C (2012) Reduced Anxiety and Depression-Like Behaviours in the Circadian Period Mutant Mouse Afterhours. PloS One, 7 (6). creators-Schalkwyk=3ALeonard_C=3A=3A. DOI https://doi.org/10.1371/journal.pone.0038263

Kember, RL and Dempster, EL and Lee, THA and Schalkwyk, LC and Mill, J and Fernandes, C (2012) Maternal separation is associated with strain‐specific responses to stress and epigenetic alterations to <i>Nr3c1</i>,<i> Avp</i>, and <i>Nr4a1</i> in mouse. Brain and Behavior, 2 (4). pp. 455-467. DOI https://doi.org/10.1002/brb3.69

Kenny, Nathan J and Sin, Yung Wa and Hayward, Alexander and Paps, Jordi and Chu, Ka Hou and Hui, Jerome HL (2015) The phylogenetic utility and functional constraint of microRNA flanking sequences. Proceedings of the Royal Society B: Biological Sciences, 282 (1803). p. 20142983. DOI https://doi.org/10.1098/rspb.2014.2983

Knoblauch, M and Gösele, C and Zimdahl, H and Hieke, B and Himmelbauer, H and Schalkwyk, L and Lindpaintner, K and Ganten, D and Lehrach, H (2000) New tools for the high throughput characterization of rat genomic DNA samples. Journal of Experimental Animal Science, 41 (1-2). pp. 35-37. DOI https://doi.org/10.1016/s0939-8600(00)80024-3

Kolthur-Seetharam, Ullas and Pradeepa, Madapura M and Gupta, Nikhil and Narayanaswamy, Rammohan and Rao, Manchanahalli R Satyanarayana (2009) Spatiotemporal Organization of AT- and GC-rich DNA and Their Association With Transition Proteins TP1 and TP2 in Rat Condensing Spermatids. Journal of Histochemistry &amp; Cytochemistry, 57 (10). pp. 951-962. DOI https://doi.org/10.1369/jhc.2009.953414

Koohy, H and Bolland, DJ and Matheson, LS and Schoenfelder, S and Stellato, C and Dimond, A and Várnai, C and Chovanec, P and Chessa, T and Denizot, J and Garcia, RM and Wingett, SW and Freire-Pritchett, P and Nagano, T and Hawkins, P and Stephens, L and Elderkin, S and Spivakov, M and Fraser, P and Corcoran, AE and Varga-Weisz, PD (2018) Genome organization and chromatin analysis identify transcriptional downregulation of insulin-like growth factor signaling as a hallmark of aging in developing B cells. Genome Biology, 19 (1). 126-. DOI https://doi.org/10.1186/s13059-018-1489-y

Kõks, S and Soomets, U and Paya-Cano, JL and Fernandes, C and Luuk, H and Plaas, M and Terasmaa, A and Tillmann, V and Noormets, K and Vasar, E and Schalkwyk, LC (2009) Wfs1 gene deletion causes growth retardation in mice and interferes with the growth hormone pathway. Physiological Genomics, 37 (3). pp. 249-259. DOI https://doi.org/10.1152/physiolgenomics.90407.2008

Kõks, S and Velthut, A and Sarapik, A and Altmäe, S and Reinmaa, E and Schalkwyk, LC and Fernandes, C and Lad, HV and Soomets, U and Jaakma, Ü and Salumets, A (2010) The differential transcriptome and ontology profiles of floating and cumulus granulosa cells in stimulated human antral follicles. MHR: Basic science of reproductive medicine, 16 (4). pp. 229-240. DOI https://doi.org/10.1093/molehr/gap103

Kõks, Sulev and Fernandes, Cathy and Kurrikoff, Kaido and Vasar, Eero and Schalkwyk, Leonard C (2008) Gene expression profiling reveals upregulation of Tlr4 receptors in Cckb receptor deficient mice. Behavioural Brain Research, 188 (1). pp. 62-70. DOI https://doi.org/10.1016/j.bbr.2007.10.020

Kõks, Sulev and Overall, Rupert W and Ivask, Marilin and Soomets, Ursel and Guha, Mithu and Vasar, Eero and Fernandes, Cathy and Schalkwyk, Leo C (2013) Silencing of the<i>WFS1</i>gene in HEK cells induces pathways related to neurodegeneration and mitochondrial damage. Physiological Genomics, 45 (5). pp. 182-190. DOI https://doi.org/10.1152/physiolgenomics.00122.2012

Kõks, Sulev and Soomets, Ursel and Plaas, Mario and Terasmaa, Anton and Noormets, Klari and Tillmann, Vallo and Vasar, Eero and Fernandes, Cathy and Schalkwyk, Leonard C (2011) Hypothalamic gene expression profile indicates a reduction in G protein signaling in the <i>Wfs1</i> mutant mice. Physiological Genomics, 43 (24). pp. 1351-1358. DOI https://doi.org/10.1152/physiolgenomics.00117.2011

Labrum, RW and Rajakulendran, S and Graves, TD and Eunson, LH and Bevan, R and Sweeney, MG and Hammans, SR and Tubridy, N and Britton, T and Carr, LJ and Ostergaard, JR and Kennedy, CR and Al-Memar, A and Kullmann, DM and Schorge, S and Temple, K and Davis, MB and Hanna, MG (2009) Large scale calcium channel gene rearrangements in episodic ataxia and hemiplegic migraine: implications for diagnostic testing. Journal of Medical Genetics, 46 (11). pp. 786-791. DOI https://doi.org/10.1136/jmg.2009.067967

Lad, Heena V and Liu, Lin and Payá-Cano, José L and Fernandes, Cathy and Schalkwyk, Leonard C (2007) Quantitative traits for the tail suspension test: automation, optimization, and BXD RI mapping. Mammalian Genome, 18 (6-7). pp. 482-491. DOI https://doi.org/10.1007/s00335-007-9029-1

Lad, Heena Vanmalibhai and Liu, Lin and Paya-Cano, Jose Luis and Parsons, Michael James and Kember, Rachel and Fernandes, Cathy and Schalkwyk, Leonard Cornelis (2010) Behavioural battery testing: Evaluation and behavioural outcomes in 8 inbred mouse strains. Physiology &amp; Behavior, 99 (3). pp. 301-316. DOI https://doi.org/10.1016/j.physbeh.2009.11.007

Langdon, WB and Harrison, AP (2009) Evolving DNA motifs to predict GeneChip probe performance. Algorithms for Molecular Biology, 4 (1). 6-. DOI https://doi.org/10.1186/1748-7188-4-6

Langdon, WB and Upton, GJG and Harrison, AP (2009) Probes containing runs of guanines provide insights into the biophysics and bioinformatics of Affymetrix GeneChips. Briefings in Bioinformatics, 10 (3). pp. 259-277. DOI https://doi.org/10.1093/bib/bbp018

Langdon, WB and Upton, GJG and da Silva Camargo, R and Harrison, AP (2010) A Survey of Spatial Defects in Homo Sapiens Affymetrix GeneChips. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 7 (4). pp. 647-653. DOI https://doi.org/10.1109/tcbb.2008.108

Lee, James J and Wedow, Robbee and Okbay, Aysu and Kong, Edward and Maghzian, Omeed and Zacher, Meghan and Nguyen-Viet, Tuan Anh and Bowers, Peter and Sidorenko, Julia and Karlsson Linnér, Richard and Fontana, Mark Alan and Kundu, Tushar and Lee, Chanwook and Li, Hui and Li, Ruoxi and Royer, Rebecca and Timshel, Pascal N and Walters, Raymond K and Willoughby, Emily A and Yengo, Loïc and Alver, Maris and Bao, Yanchun and Clark, David W and Day, Felix R and Furlotte, Nicholas A and Joshi, Peter K and Kemper, Kathryn E and Kleinman, Aaron and Langenberg, Claudia and Mägi, Reedik and Trampush, Joey W and Verma, Shefali Setia and Wu, Yang and Lam, Max and Zhao, Jing Hua and Zheng, Zhili and Boardman, Jason D and Campbell, Harry and Freese, Jeremy and Harris, Kathleen Mullan and Hayward, Caroline and Herd, Pamela and Kumari, Meena and Lencz, Todd and Luan, Jian an and Malhotra, Anil K and Metspalu, Andres and Milani, Lili and Ong, Ken K and Perry, John RB and Porteous, David J and Ritchie, Marylyn D and Smart, Melissa C and Smith, Blair H and Tung, Joyce Y and Wareham, Nicholas J and Wilson, James F and Beauchamp, Jonathan P and Conley, Dalton C and Esko, Tõnu and Lehrer, Steven F and Magnusson, Patrik KE and Oskarsson, Sven and Pers, Tune H and Robinson, Matthew R and Thom, Kevin and Watson, Chelsea and Chabris, Christopher F and Meyer, Michelle N and Laibson, David I and Yang, Jian and Johannesson, Magnus and Koellinger, Philipp D and Turley, Patrick and Visscher, Peter M and Benjamin, Daniel J and Cesarini, David (2018) Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals. Nature Genetics, 50 (8). pp. 1112-1121. DOI https://doi.org/10.1038/s41588-018-0147-3

Lill, M and Kõks, S and Soomets, U and Schalkwyk, LC and Fernandes, C and Lutsar, I and Taba, P (2013) Peripheral blood RNA gene expression profiling in patients with bacterial meningitis. Frontiers in Neuroscience, 7 (7). 33-. DOI https://doi.org/10.3389/fnins.2013.00033

Ludeman, Danielle A and Farrar, Nathan and Riesgo, Ana and Paps, Jordi and Leys, Sally P (2014) Evolutionary origins of sensation in metazoans: functional evidence for a new sensory organ in sponges. BMC Evolutionary Biology, 14 (1). 3-. DOI https://doi.org/10.1186/1471-2148-14-3

Lunnon, Katie and Hannon, Eilis and Smith, Rebecca G and Dempster, Emma and Wong, Chloe and Burrage, Joe and Troakes, Claire and Al-Sarraj, Safa and Kepa, Agnieszka and Schalkwyk, Leonard and Mill, Jonathan (2016) Variation in 5-hydroxymethylcytosine across human cortex and cerebellum. Genome Biology, 17 (1). 27-. DOI https://doi.org/10.1186/s13059-016-0871-x

Lunnon, Katie and Keohane, Aoife and Pidsley, Ruth and Newhouse, Stephen and Riddoch-Contreras, Joanna and Thubron, Elisabeth B and Devall, Matthew and Soininen, Hikka and Kłoszewska, Iwona and Mecocci, Patrizia and Tsolaki, Magda and Vellas, Bruno and Schalkwyk, Leonard and Dobson, Richard and Malik, Afshan N and Powell, John and Lovestone, Simon and Hodges, Angela (2017) Mitochondrial genes are altered in blood early in Alzheimer's disease. Neurobiology of Aging, 53. pp. 36-47. DOI https://doi.org/10.1016/j.neurobiolaging.2016.12.029

Lunnon, Katie and Smith, Rebecca and Hannon, Eilis and De Jager, Philip L and Srivastava, Gyan and Volta, Manuela and Troakes, Claire and Al-Sarraj, Safa and Burrage, Joe and Macdonald, Ruby and Condliffe, Daniel and Harries, Lorna W and Katsel, Pavel and Haroutunian, Vahram and Kaminsky, Zachary and Joachim, Catharine and Powell, John and Lovestone, Simon and Bennett, David A and Schalkwyk, Leonard C and Mill, Jonathan (2014) Methylomic profiling implicates cortical deregulation of ANK1 in Alzheimer's disease. Nature Neuroscience, 17 (9). pp. 1164-1170. DOI https://doi.org/10.1038/nn.3782

Mahmoud, Osama and Harrison, Andrew and Perperoglou, Aris and Gul, Asma and Khan, Zardad and Metodiev, Metodi V and Lausen, Berthold (2014) A feature selection method for classification within functional genomics experiments based on the proportional overlapping score. BMC Bioinformatics, 15 (1). 274-. DOI https://doi.org/10.1186/1471-2105-15-274

Malki, K and Keers, R and Tosto, MG and Lourdusamy, A and Carboni, L and Domenici, E and Uher, R and McGuffin, P and Schalkwyk, LC (2014) The endogenous and reactive depression subtypes revisited: integrative animal and human studies implicate multiple distinct molecular mechanisms underlying major depressive disorder. BMC Medicine, 12 (1). 73-. DOI https://doi.org/10.1186/1741-7015-12-73

Malki, K and Tosto, MG and Pain, O and Sluyter, F and Mineur, YS and Crusio, WE and de Boer, S and Sandnabba, KN and Kesserwani, J and Robinson, E and Schalkwyk, LC and Asherson, P (2016) Comparative mRNA analysis of behavioral and genetic mouse models of aggression. American Journal of Medical Genetics Part B-Neuropsychiatric Genetics, 171 (3). pp. 427-436. DOI https://doi.org/10.1002/ajmg.b.32424

Malki, Karim and Campbell, James and Davies, Matthew and Keers, Robert and Uher, Rudolf and Ward, Malcolm and Paya‐Cano, Jose and Aitchinson, Katherine J and Binder, Elke and Sluyter, Frans and Kuhn, Karsten and Selzer, Stefan and Craig, Ian and McGuffin, Peter and Schalkwyk, Leonard C (2012) Pharmacoproteomic investigation into antidepressant response in two mouse inbred strains. PROTEOMICS, 12 (14). pp. 2355-2365. DOI https://doi.org/10.1002/pmic.201100306

Malki, Karim and Du Rietz, Ebba and Crusio, Wim E and Pain, Oliver and Paya‐Cano, Jose and Karadaghi, Rezhaw L and Sluyter, Frans and de Boer, Sietse F and Sandnabba, Kenneth and Schalkwyk, Leonard C and Asherson, Philip and Tosto, Maria Grazia (2016) Transcriptome analysis of genes and gene networks involved in aggressive behavior in mouse and zebrafish. American Journal of Medical Genetics Part B: Neuropsychiatric Genetics, 171 (6). pp. 827-838. DOI https://doi.org/10.1002/ajmg.b.32451

Malki, Karim and Lourdusamy, Anbarasu and Binder, Elke and Payá-Cano, Jose and Sluyter, Frans and Craig, Ian and Keers, Robert and McGuffin, Peter and Uher, Rudolf and Schalkwyk, Leonard C (2012) Antidepressant-dependent mRNA changes in mouse associated with hippocampal neurogenesis in a mouse model of depression. Pharmacogenetics and Genomics, 22 (11). pp. 765-776. DOI https://doi.org/10.1097/fpc.0b013e328356fa90

Malki, Karim and Mineur, Yann S and Tosto, Maria Grazia and Campbell, James and Karia, Priya and Jumabhoy, Irfan and Sluyter, Frans and Crusio, Wim E and Schalkwyk, Leonard C (2015) Pervasive and opposing effects of Unpredictable Chronic Mild Stress (UCMS) on hippocampal gene expression in BALB/cJ and C57BL/6J mouse strains. BMC Genomics, 16 (1). 262-. DOI https://doi.org/10.1186/s12864-015-1431-6

Malki, Karim and Pain, Oliver and Du Rietz, Ebba and Tosto, Maria Grazia and Paya-Cano, Jose and Sandnabba, Kenneth N and de Boer, Sietse and Schalkwyk, Leonard C and Sluyter, Frans (2014) Genes and Gene Networks Implicated in Aggression Related Behaviour. neurogenetics, 15 (4). pp. 255-266. DOI https://doi.org/10.1007/s10048-014-0417-x

Malki, Karim and Tosto, Maria Grazia and Jumabhoy, Irfan and Lourdusamy, Anbarasu and Sluyter, Frans and Craig, Ian and Uher, Rudolf and McGuffin, Peter and Schalkwyk, Leonard C (2013) Integrative Mouse and Human mRNA Studies Using WGCNA Nominates Novel Candidate Genes Involved in the Pathogenesis of Major Depressive Disorder. Pharmacogenomics, 14 (16). pp. 1979-1990. DOI https://doi.org/10.2217/pgs.13.154

Malki, Karim and Tosto, Maria Grazia and Mouriño‐Talín, Héctor and Rodríguez‐Lorenzo, Sabela and Pain, Oliver and Jumhaboy, Irfan and Liu, Tina and Parpas, Panos and Newman, Stuart and Malykh, Artem and Carboni, Lucia and Uher, Rudolf and McGuffin, Peter and Schalkwyk, Leonard C and Bryson, Kevin and Herbster, Mark (2017) Highly polygenic architecture of antidepressant treatment response: Comparative analysis of SSRI and NRI treatment in an animal model of depression. American Journal of Medical Genetics Part B: Neuropsychiatric Genetics, 174 (3). pp. 235-250. DOI https://doi.org/10.1002/ajmg.b.32494

Malki, Karim and Uher, Rudolf and Paya-Cano, Jose and Binder, Elke and Rietschel, Marcella and Zobel, Astrid and Mors, Ole and Hauser, Joanna and Henigsberg, Neven and Jerman, Borut and Souery, Daniel and Placentino, Anna and Ng, Mandy Y and Cohen-Woods, Sarah and Sluyter, Frans and Farmer, Anne and Aitchison, Katherine J and Craig, Ian W and Lewis, Cathryn M and McGuffin, Peter and Schalkwyk, Leonard C (2011) Convergent Animal and Human Evidence Suggests a Role of PPM1A Gene in Response to Antidepressants. Biological Psychiatry, 69 (4). pp. 360-365. DOI https://doi.org/10.1016/j.biopsych.2010.08.011

Marco, Antonio (2015) Selection Against Maternal microRNA Target Sites in Maternal Transcripts. G3 Genes|Genomes|Genetics, 5 (10). pp. 2199-2207. DOI https://doi.org/10.1534/g3.115.019497

Marco, Antonio (2014) Sex-biased expression of microRNAs in<i>Drosophila melanogaster</i>. Open Biology, 4 (4). p. 140024. DOI https://doi.org/10.1098/rsob.140024

Marin, R and Cortez, D and Lamanna, F and Pradeepa, MM and Leushkin, E and Julien, P and Liechti, A and Halbert, J and Brüning, T and Mössinger, K and Trefzer, T and Conrad, C and Kerver, HN and Wade, J and Tschopp, P and Kaessmann, H (2017) Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage. Genome Research, 27 (12). pp. 1974-1987. DOI https://doi.org/10.1101/gr.223727.117

Marlétaz, Ferdinand and Paps, Jordi and Maeso, Ignacio and Holland, Peter WH (2014) Discovery and Classification of Homeobox Genes in Animal Genomes. Methods in Molecular Biology, 1196. pp. 3-18. DOI https://doi.org/10.1007/978-1-4939-1242-1_1

Martin, Charlotte and Tansey, Katherine E and Schalkwyk, Leonard C and Powell, Timothy R (2015) The inflammatory cytokines: molecular biomarkers for major depressive disorder? Biomarkers in Medicine, 9 (2). pp. 169-180. DOI https://doi.org/10.2217/bmm.14.29

Marzi, Sarah J and Leung, Szi Kay and Ribarska, Teodora and Hannon, Eilis and Smith, Adam R and Pishva, Ehsan and Poschmann, Jeremie and Moore, Karen and Troakes, Claire and Al-Sarraj, Safa and Beck, Stephan and Newman, Stuart and Lunnon, Katie and Schalkwyk, Leonard C and Mill, Jonathan (2018) A histone acetylome-wide association study of Alzheimer’s disease identifies disease-associated H3K27ac differences in the entorhinal cortex. Nature Neuroscience, 21 (11). pp. 1618-1627. DOI https://doi.org/10.1038/s41593-018-0253-7

Marzi, Sarah J and Meaburn, Emma L and Dempster, Emma L and Lunnon, Katie and Paya-Cano, Jose L and Smith, Rebecca G and Volta, Manuela and Troakes, Claire and Schalkwyk, Leonard C and Mill, Jonathan (2016) Tissue-specific patterns of allelically-skewed DNA methylation. Epigenetics, 11 (1). pp. 24-35. DOI https://doi.org/10.1080/15592294.2015.1127479

McCarthy, L and Hunter, K and Schalkwyk, L and Riba, L and Anson, S and Mott, R and Newell, W and Bruley, C and Bar, I and Ramu, E (1995) Efficient high-resolution genetic mapping of mouse interspersed repetitive sequence PCR products, toward integrated genetic and physical mapping of the mouse genome. Proceedings of the National Academy of Sciences, 92 (12). pp. 5302-5306. DOI https://doi.org/10.1073/pnas.92.12.5302

Meaburn, EL and Butcher, LM and Liu, L and Fernandes, C and Hansen, V and Al-Chalabi, A and Plomin, R and Craig, IW and Schalkwyk, LC (2005) Genotyping DNA pools on microarrays: Tackling the QTL problem of large samples and large numbers of SNPs. BMC Genomics, 6 (1). creators-Schalkwyk=3ALeonard_C=3A=3A. DOI https://doi.org/10.1186/1471-2164-6-52

Meaburn, EL and Butcher, LM and Schalkwyk, LC and Plomin, R (2006) Genotyping pooled DNA using 100K SNP microarrays: a step towards genomewide association scans. Nucleic acids research, 34 (4). creators-Schalkwyk=3ALeonard_C=3A=3A. DOI https://doi.org/10.1093/nar/gnj027

Meaburn, EL and Fernandes, C and Craig, IW and Plomin, R and Schalkwyk, LC (2009) Assessing Individual Differences in Genome-Wide Gene Expression in Human Whole Blood: Reliability Over Four Hours and Stability Over 10 Months. Twin Research and Human Genetics, 12 (4). pp. 372-380. DOI https://doi.org/10.1375/twin.12.4.372

Meaburn, EL and Harlaar, N and Craig, IW and Schalkwyk, LC and Plomin, R (2008) Quantitative trait locus association scan of early reading disability and ability using pooled DNA and 100K SNP microarrays in a sample of 5760 children. Molecular Psychiatry, 13 (7). pp. 729-740. DOI https://doi.org/10.1038/sj.mp.4002063

Meaburn, Emma L and Schalkwyk, Leonard C and Mill, Jonathan (2010) Allele-specific methylation in the human genome. Epigenetics, 5 (7). pp. 578-582. DOI https://doi.org/10.4161/epi.5.7.12960

Memon, FN and Owen, AM and Sanchez-Graillet, O and Upton, GJG and Harrison, AP (2010) Identifying the impact of G-quadruplexes on Affymetrix 3' arrays using cloud computing. Journal of integrative bioinformatics, 7 (2). 111-. DOI https://doi.org/10.1515/jib-2010-111

Memon, Farhat Naureen and Upton, Graham JG and Harrison, Andrew P (2010) A Comparative Study of the Impact of G‐Stack Probes on Various Affymetrix GeneChips of Mammalia. Journal of Nucleic Acids, 2010 (1). pp. 1-6. DOI https://doi.org/10.4061/2010/489736

Miettinen, ME and Smart, MC and Kinnunen, L and Harjutsalo, V and Reinert-Hartwall, L and Ylivinkka, I and Surcel, HM and Lamberg-Allardt, C and Hitman, GA and Tuomilehto, J (2017) Genetic determinants of serum 25-hydroxyvitamin D concentration during pregnancy and type 1 diabetes in the child. PLoS ONE, 12 (10). e0184942-e0184942. DOI https://doi.org/10.1371/journal.pone.0184942

Mill, J and Galsworthy, MJ and Paya‐Cano, JL and Sluyter, F and Schalkwyk, LC and Plomin, R and Asherson, P (2002) Home‐cage activity in heterogeneous stock (HS) mice as a model of baseline activity. Genes, Brain and Behavior, 1 (3). pp. 166-173. DOI https://doi.org/10.1034/j.1601-183x.2002.10304.x

Munnoch, JT and Martinez, MTP and Svistunenko, DA and Crack, JC and Le Brun, NE and Hutchings, MI (2016) Characterization of a putative NsrR homologue in Streptomyces venezuelae reveals a new member of the Rrf2 superfamily. Scientific Reports, 6 (1). 31597-. DOI https://doi.org/10.1038/srep31597

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Navarrete, K and Pedroso, I and De Jong, S and Stefansson, H and Steinberg, S and Stefansson, K and Ophoff, RA and Schalkwyk, LC and Collier, DA (2013) TCF4 (e2-2; ITF2): a schizophrenia-associated gene with pleiotropic effects on human disease. American Journal of Medical Genetics Part B-Neuropsychiatric Genetics, 162 (1). pp. 1-16. DOI https://doi.org/10.1002/ajmg.b.32109

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de Lima Alves, Flávia and Stevenson, Andrew and Baxter, Esther and Gillion, Jenny LM and Hejazi, Fakhrossadat and Hayes, Sandra and Morrison, Ian EG and Prior, Bernard A and McGenity, Terry J and Rangel, Drauzio EN and Magan, Naresh and Timmis, Kenneth N and Hallsworth, John E (2015) Concomitant osmotic and chaotropicity-induced stresses in Aspergillus wentii: compatible solutes determine the biotic window. Current Genetics, 61 (3). pp. 457-477. DOI https://doi.org/10.1007/s00294-015-0496-8

Book Section

Baguñà, J and Carranza, S and Paps, J and Ruiz-Trillo, I and Riutort, M (2000) Molecular taxonomy and phylogeny of the Tricladida. In: Interrelationships of the Platyhelminthes. Systematics Association Special Volumes . CRC Press, London, pp. 49-56. ISBN 9780748409037.

Baguñà, Jaume and Martinez, Pere and Paps, Jordi and Riutort, Marta (2008) Unravelling body plan and axial evolution in the Bilateria with molecular phylogenetic markers. In: Evolving Pathways. Cambridge University Press, pp. 217-238. ISBN 9780521875004. Official URL: https://doi.org/10.1017/cbo9780511541582.017

Einsiedel, Edna and Allansdottir, Agnes and Allum, Nick and Bauer, Martin W and Berthomier, Anne and Chatjouli, Aigli and de Cheveigné, Suzanne and Downey, Robin and Gutteling, Jan M and Kohring, Mattias and others (2002) Brave new sheep the clone named Dolly. In: UNSPECIFIED Cambridge University Press. ISBN 9780521774390.

Exposito-Rodriguez, M and Laissue, PP and Littlejohn, GR and Smirnoff, N and Mullineaux, PM (2013) The Use of HyPer to Examine Spatial and Temporal Changes in H₂O₂ in High Light-Exposed Plants. In: Methods in Enzymology (Vol. 527). Elsevier, pp. 185-201. ISBN 9780124058828. Official URL: https://doi.org/10.1016/B978-0-12-405882-8.00010-6

Gaskell, George and Thompson, Paul and Allum, Nick (2002) Worlds apart? Public opinion in Europe and the USA. In: UNSPECIFIED Cambridge Univ Pr, p. 351. ISBN 9780521774390.

Harrison, Andrew and Shanahan, Hugh (2014) An Overview of Gene Regulation. In: Approaches in Integrative Bioinformatics. Springer Berlin Heidelberg, pp. 21-69. ISBN 9783642412806. Official URL: https://doi.org/10.1007/978-3-642-41281-3_2

Marco, A (2017) Clearance of Maternal RNAs: Not a Mummy's Embryo Anymore. In: Zygotic Genome Activation. Methods in Molecular Biology . Springer, pp. 1-10. ISBN 9781493969869. Official URL: https://doi.org/10.1007/978-1-4939-6988-3_1

Marco, A (2017) The Origin and Evolution of Maternal Genes. In: Oocytes. Results and Problems in Cell Differentiation, 63 . Springer, pp. 483-494. ISBN 978-3-319-60854-9. Official URL: https://doi.org/10.1007/978-3-319-60855-6_20

Riutort, M and Paps, J and Ruiz-Trillo, I (2014) Bilaterians: The Evolutionary Advantage of Being Two-Sided. In: The Tree of Life. Sinauer Associates Inc. ISBN 978-1-60535-229-9.

Wagner, W and Kronberger, N and Allum, N and de Cheveigné, S and Diego, C and Gaskell, G and Heinßen, M and Midden, C and Odegaard, M and Olsson, S and Rizzo, B and Rusannen, T and Stathopoulou, A (2002) Pandora’s Genes-Images of Biotechnology and Nature in Europe. In: Biotechnology - the Making of a Global Controversy. Cambridge University Press. ISBN 978-0521774390. Official URL: https://www.researchgate.net/publication/254809439...

Conference or Workshop Item

Binder, E and Paya-Cano, JL and Sluyter, F and Schalkwyk, LC (2006) P.1.d.016 The effects of a selective serotonin reuptake inhibitor and a tricyclic antidepressant on the behaviour of chronically stressed 129SvemJ and C57BL/6J mice in the hole board and forced swim test. In: UNSPECIFIED, ? - ?.

Butcher, LM and Meaburn, E and Knight, J and Sham, PC and Schalkwyk, LC and Craig, IW and Plomin, R (2005) Allelotyping over 10,000 SNPs using DNA pools and microarrays nominates four SNPs associated with mild mental impairment. In: UNSPECIFIED, ? - ?.

Butcher, LM and Meaburn, E and Knight, J and Sham, PC and Schalkwyk, LC and Craig, IW and Plomin, R (2005) SNPs, microarrays, and pooled DNA: Identification of four loci associated with mild mental impairment in a sample of 6000 children. In: UNSPECIFIED, ? - ?.

Butcher, LM and Meaburn, EL and Craig, IW and Schalkwyk, LC and Plomin, R (2006) A genomewide association scan for GE interplay in childhood. In: XIV World Congress on Psychiatric Genetics, 2006-10-28 - 2006-11-01, Cagliari, Italy.

D'Souza, UM and Sugden, K and Pariante, CM and Byers, H and Ward, M and Schalkwyk, LC and McGuffin, P and Aitchison, KJ (2006) Effects of antidepressant treatment on gene expression in mouse cultured cells. In: XIV World Congress on Psychiatric Genetics, 2006-10-28 - 2006-11-01, Cagliari, Italy.

Fernandes, C and Liu, L and Paya-Cano, JL and Whatley, SA and Schalkwyk, LC (2004) Correlating behaviour with gene expression: Identifying genes for anxiety and cognition in the mouse. In: UNSPECIFIED, ? - ?.

Huezo-Diaz, Patricia and Williamson, R and Nash, MW and Sim, SC and Alhberg, S and Hoda, F and Rietschel, M and Schmal, C and Farmer, A and Schulze, T and Hauser, J and Henigsberg, N and Maier, W and Zobel, A and Larsen, ER and Mors, O and Mendelewicz, J and Marusic, A and Perez, J and Schalkwyk, L and McGuffin, P and Craig, I and Ingelman-Sundberg, M and Aitchison, KJ (2006) CYP2D6 and CYP2C19 association data from GENDEP, a multicentre European study. In: UNSPECIFIED, ? - ?.

Kheniche, A and Salhi, A and Harrison, A and Dowden, JM (2008) A deterministic algorithm for DNA sequence comparison. In: UNSPECIFIED, ? - ?.

Langdon, William B and Harrison, Andrew P (2008) Evolving Regular Expressions for GeneChip Probe Performance Prediction. In: UNSPECIFIED, ? - ?.

Liu, L and Fernandes, C and Brookes, K and Paya-Capo, J and Asherson, P and Schalkwyk, LC (2005) P.2.07 Selecting over-active extremes in outbred heterogeneous stock (HS) mice for gene expression profiling: nominating novel candidate genes for over-activity. In: UNSPECIFIED, ? - ?.

Mahmoud, Osama and Harrison, Andrew and Gul, Asma and Khan, Zardad and Metodiev, Metodi V and Lausen, Berthold (2016) Minimizing Redundancy Among Genes Selected Based on the Overlapping Analysis. In: UNSPECIFIED, ? - ?.

Meaburn, EL and Butcher, LM and Knight, J and Craig, I and Schalkwyk, LC and Plomin, R (2005) QTLs for reading disability at 7 years: Genotyping pooled DNA on 100K SNP microarrays. In: UNSPECIFIED, ? - ?.

Meaburn, EL and Butcher, ML and Liu, L and Fernandes, C and Sham, P and Plomin, R and Craig, I and Schalkwyk, L (2004) DNA pools on 10K genechips: Solving the QTL problem of large samples and large numbers of SNPS. In: UNSPECIFIED, ? - ?.

Meaburn, Emma and Butcher, Lee M and Harlaar, Nicole and Curtis, Charles and Craig, Ian W and Schalkwyk, Leonard C and Plomin, Robert (2006) An association scan using pooled DNA and 100k SNPS identifies a 'SNP set' for early reading. In: UNSPECIFIED, ? - ?.

Meaburn, Emma and Harlaar, Nicole and Craig, Ian W and Schalkwyk, Leonard C and Plomin, Robert (2007) Genomewide gene expression profiles as a biological basis for non-shared environment: MZ twins discordant for reading ability. In: UNSPECIFIED, ? - ?.

Paya-Cano, JL and Sluyter, F and Mineur, YS and Fernandes, C and Crusio, WE and Schalkwyk, LC (2006) P.1.a.015 Strain differences in susceptibility to unpredictable chronic mild stress as assessed by hippocampal gene expression profiling. In: UNSPECIFIED, ? - ?.

Salhi, Abdellah and Rodríguez, José Antonio Vázquez and Zhang, Qingfu (2007) An estimation of distribution algorithm with guided mutation for a complex flow shop scheduling problem. In: GECCO07: Genetic and Evolutionary Computation Conference, ? - ?.

Sugden, K and D'Souza, UM and McGuffin, P and Schalkwyk, LC and Aitchison, KJ and Pariante, CM (2005) Gene expression analyses of a mouse fibroblast cell line after antidepressant treatment. In: UNSPECIFIED, ? - ?.

Tandon, K and Schalkwyk, L and Patel, M and Kinirons, M and Kerwin, R and McGuffin, P and Aitchison, KJ (2002) An amino acid substitution (IIe109Val) in CYP2D6. In: UNSPECIFIED, ? - ?.

Tandon, K and Schalkwyk, LC and Checkley, S and Patel, M and Kinirons, M and Kerwin, RW and McGuffin, P and Aitchison, KJ (2002) CYP2D6 genotype and treatment with tricyclic antidepressants. In: X World Congress of Psychiatric Genetics, 2002-10-09 - 2002-10-13, Brussels, Belgium.

Zabet, NR and Hone, ANW and Chu, DF (2010) Design principles of transcriptional logic circuits. In: UNSPECIFIED, ? - ?.

Zabet, Nicolae Radu and Chu, Dominique F (2010) Stochasticity and Robustness in Bi-Stable Systems. In: 2010 4th International Conference on Bioinformatics and Biomedical Engineering (iCBBE), 2010-06-18 - 2010-06-20.

Thesis

Abuzaid, Amani Omar S (2017) Functional analysis of the CP12 gene family in Arabidopsis. PhD thesis, University of Essex.

Albhilal, Waleed Sulaiman (2015) The Arabidopsis thaliana Heat Shock Transcription Factor A1b Transcriptional Regulatory Network. PhD thesis, University of Essex.

Aljuaid, Bandar (2017) Identification and analysis of Arabidopsis thiamine pyrophosphate transporters. PhD thesis, University of Essex.

Andrayas, Alexandria (2017) Considering the impact of smoking on DNA methylation in Understanding Society. Masters thesis, University of Essex.

Bowles, Alexander MC (2021) Major transitions in the plant tree of life: insights from genes, genomes and traits. PhD thesis, University of Essex.

Cil, Emine (2022) Investigating the Role of Androgen Receptor Signalling in Oestrogen Receptor Positive Breast Cancer. PhD thesis, University of Essex.

Ciuta, Isabella (2024) Chromatin reorganisation and differential transcription factor binding in breast cancer. Masters thesis, University of Essex.

Correa, Clark (2024) Nucleosome repositioning in Glioblastoma Multiforme. Masters thesis, University of Essex.

Don, Nicola (2015) A single molecule approach to investigate how AP1 transcriptional regulators find their target sites on DNA. PhD thesis, University of Essex.

Dumitrana, A M (2020) Modelling transcription factors diffusion in 3D using Hi-C data. Masters thesis, University of Essex.

Dumitrana, Ana Maria (2023) Computational Design of DNAzymes. Doctoral thesis, University of Essex.

Elbishbishy, Mohab Helmy (2019) Cell Signalling and MicroRNAs: Regulation and Evolution. PhD thesis, University of Essex.

Ferguson, John N (2017) Natural variation of water use and water productivity in Arabidopsis thaliana. PhD thesis, University of Essex.

Freeman, Howard (2023) What Makes a Habitat a Home: Understanding Settlement and Recruitment Variation in European Sea Bass, Dicentrarchus labrax. Doctoral thesis, University of Essex.

Gordon, Jessica D (2023) Population and Seascape Genomics of the Deep-sea Octocoral Acanella arbuscula. Doctoral thesis, University of Essex.

Gorrie-Stone, Tyler James (2019) DNA Methylation: Methods and Analyses. PhD thesis, University of Essex.

Greenwood, Bethan N (2021) Corals at the extreme: partitioning the response of coral holobionts to marginal habitats. PhD thesis, University of Essex.

Guijarro, Cristina (2020) Unravelling the Origins and Evolution of the Animal Kingdom using Genomics. PhD thesis, University of Essex.

Martin, Patrick C N (2020) Dissecting the binding mechanisms of transcription factors to DNA using a statistical thermodynamics framework. PhD thesis, University of Essex.

Mikheeva, Liudmila (2022) A Novel Statistical Framework to Detect Complex 3D Genome Organisation Patterns into Topologically Associated Domains. PhD thesis, University of Essex.

Paps, J (2008) Filogènia Molecular dels Bilaterals: una aproximació multigènica. PhD thesis, UNSPECIFIED.

Pine, Angela C (2021) The Development of Gene Therapy by way of DNAzymes, and a Computational Tool that Predicts Efficient DNAzymes. PhD thesis, University of Essex.

Porto, Tatiana V (2015) Structural and kinetic studies of a copper sensor protein in Streptomyces lividans. PhD thesis, University of Essex.

Straw, Megan Laura (2019) Storing copper in Streptomyces lividans: structural and biochemical properties of a copper storage protein. PhD thesis, University of Essex.

Zastapilo, Jakub (2022) Gene expression variation and buffering mechanisms in Arabidopsis thaliana. Masters thesis, University of Essex.